jgi.p|Nanoce1779_2|597532, mRNA_6630 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597532
Unique Name	mRNA_6630
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2620
Alignment location	scaffold_18:313887..317006 -

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Properties


Property Name	Value
TranscriptId	597618
Track	FilteredModels2
ProteinId	597532

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:313887..317006 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597532	gene_6630	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597532	mRNA_6630-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6630	CDS_6630	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:313887..317006-
coding sequence from alignment at scaffold_18:313887..317006-

mRNA sequence

>mRNA_6630 ID=mRNA_6630|Name=jgi.p|Nanoce1779_2|597532|organism=Nannochloropsis oceanica|type=mRNA|length=2620bp
CGCAGCATGCAGCGCCTGGGACTTCATTAAGTCAATTAGGGTTGGAAGGG
GAGGAGGATTTGAGGATGCTGTCGCTATTGAGTTTTGAGCCTGAATTTGT
GAGGCCGCCCCCGCCAGTGCTGGAAGTGGGGGAGACAGAGTGGATTTGGT
TGAATCCTGATTATGCCCCGAAGCTGCTGTGGGACGTGGCGATGGGTCAG
GATGATGGCAAGGGGGCCGAGGTGAGAGAACTGATGGCGAAGGCCTTTAA
GGGTCCCTTGGTCCCGCAGCAGCAGCAGCAGGTGTTAAGGGAACTGGAGA
GCGACGCGAGGCTCGTGCATCATTGTGGTTTGACCCCGCAGAGACTACCG
GAGTTGGTAGAGAACAACCCGATGATTGCGATTGAGTGTCTGTTGAAGCT
GATGGGTTCGAGTCAGAAGAATGAGTATTTATCGGCGTTGGTCAATATGG
AGATGTCGCTACATTCGATGGAGGTGGTGAACAGGCTTACGACGGTAGTT
CCCTTGCCGACCGAATTCATTCATTTGTACATCTCGAATTGTATCTCGTC
CTGTGAGAACATCAAAGATAAGTACATGCAGAACCGCCTGGTTAGGTTGG
TGTGTGTCTTCTTGCAGAGCCTGATACGGAATAAGATTATAAATGTCCAG
GATCTCTACATTGAGGTGCAGGCGTTCTGCATCGAGTTTTCCCGGATTCG
GGAGGCGGCAGGTTTGTTCCGGTTGCTCAAGACGCTGGAATGAGAAAATG
AAAGAGAAGAAGGAAAAACATGAGAATTTCCCCCTTCTTTATAATCGATG
TGCCTCACACATCGGGTCGTGTTACCATGGTATCCGGATGGAATGCTTCA
AAGCTTTGTAGCTTTATGTTTCTTTATTATCACCAGCACCCAGGAAACAT
AGACACACGCAGGAGCCTGTCGGCAAGATAGAGACTGCTTGGTCTGTCGT
GGCGTCTGACGATCAAAAGCACAAAACAGAAGGGTTGAGGGCCCCAAATC
GAGCTGAATTGAACGTGAGTACGTTAGAATGTTTCAGAAATGTTCGTCTT
CATCTTTCTCACCTGAGAAAGGAAACACATGAAGCGAGAACTCATTCAAC
ACCGATCCGTGCTCGGACACATATATTATTCAACCGTTCATATTATTCAA
CCGTTCACAACGGCTTGTTGCTTCTTCAATTTGGGTGCCTCCATCTATCT
GCCTATAGCTTCTCCTACCTCCTTTCACCTGTCCCTTCTCCTTCCCCCCT
CCTTATAACACATTCATCACCAGTTGTGCGTACTCTTTCTCCTCTCCCGT
CTCCTGCGGCAGATACTCACCCACCTCCTCCCTCGTCACCCAAACAAACT
CTTCCACCCCCTCCTCCACCACCCTTCCCCTCCCCTTCAAATGCTGCGCC
CGGTAAAAGAAGACCTTCTCTCCGTACACATTTCCCCCTGCCCCTACTGA
TGATGCCCCTGCGGTCGCTGCTGGCACCCTCCAATGCATCCCTACTGGAG
CGTTCGACGGCATATAGGCCTCAAACTTCTCCCCCAAAAACCTTCCCACC
GTCGCCTCGTGAGTCCTCCTCATTGAATCCCTTCCGTCCTTTCCTCCTTT
CCCCAATACCGCCATAGGTAGATCCCACCTATCCCCCGTGATGGGCCCTT
TGACCAACAGGAACAAACGTTCGCTTAACGCCCGGTTTAACGTCGTCCGA
TCATTTAAACGGTCAGCTTTCGTGACGCGTGGGGCAAGCTTGAAGGGCAA
CTCGGGCAGAATCTCGGCATCCGGACGGTCCATCTCGTTGGCTTGACCCA
TCACATCGAGCTCTTTGGGGAAAGCCTTGCCGTGCCTTGCAATCTCCTCT
TGCATTTCCATGTAGGCCGCTTCCCAGGCCTCGGGTTCCTTCATTATAAT
GGGGAGGCGCTCCACGATGCTAGCTGCGACAATGAGCCAGGGCAAATCAG
CTTGCTTAGCGGCCACTTCATGCTTGGCCAGCTGCTCTTCACGCTTTTTG
AGATACGCCGCTGTGACCGAGGGCCGCTTGCCCTTTTTCTTCTTGGGCTT
GAGACCACCCTTTCTAGTCTTGGTGAGGGGCGCGGACGCAGCAGCTAGTG
ATGAGGATAACGGTAGTTGTGCGGCAATCTTCGGTGTGGCCTTAGCAGCC
GTTGCGAATGTTCTTCTGGTGGTGGCCACTACTACTGCTGCGGTGGGGAG
AATGGTGGAAGAGGCTAATGTACTGCTGCTGCCGCTGCTGCTTGGGATGA
TGGTGGAGGAGGCAAGCCGTCTTGCTCCAAATAAAAGCGTCCTTTCGCCC
GCGCGCCAGCGCCGTAACCAAGATTGCAGCATACCTGTTGTGTCTGGGTT
CGTGGGGAAGGGTGTGGATGTGAAAGGCCTCACAAGGGAGCGTATCAGAA
GCATGGATGGACGCAATAAAGGCAAGGATCCTTCATGACGACGCCGACGA
GCGACGATACGACTTGTACCTGTTCCTTTAGAGTGCGTCTTTTAGAAAAG
GATGTTTAAGGCGCTTACCGGAGGTGGCCAACATCATACCCTGTATAGCA
TAACGTCCTCACGGGCAAGGCGCTCTGGTATTTTCCGATGATATCATCTC
TGGGCTTGTGCGGCTCGAGA

protein sequence of jgi.p|Nanoce1779_2|597532

>mRNA_6630-protein ID=mRNA_6630-protein|Name=jgi.p|Nanoce1779_2|597532|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MLSLLSFEPEFVRPPPPVLEVGETEWIWLNPDYAPKLLWDVAMGQDDGKG
AEVRELMAKAFKGPLVPQQQQQVLRELESDARLVHHCGLTPQRLPELVEN
NPMIAIECLLKLMGSSQKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTE
FIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLYIE
VQAFCIEFSRIREAAGLFRLLKTLE*

mRNA from alignment at scaffold_18:313887..317006-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6630 ID=mRNA_6630|Name=jgi.p|Nanoce1779_2|597532|organism=Nannochloropsis oceanica|type=mRNA|length=3120bp|location=Sequence derived from alignment at scaffold_18:313887..317006- (Nannochloropsis oceanica)
CGCAGCATGCAGCGCCTGGGACTTCATTAAGTCAATTAGGGTTGGAAGGG
GAGGAGGATTTGAGGATGCTGTCGCTATTGAGTTTTGAGCCTGAATTTGT
GAGGCCGCCCCCGCCAGTGCTGGAAGTGGGGGAGACAGAGTGGATTTGGT
TGAATCCTGATTATGCCCCGAAGCTGCTGTGGGACGTGGCGATGGGTCAG
GATGATGGCAAGGGGGCCGAGGTGAGAGAACTGATGGCGAAGGCCTTTAA
GGGTCCCTTGGTCCCGCAGCAGCAGCAGCAGGTGTTAAGGGAACTGGAGA
GCGACGCGAGGCTCGTGCATCATTGTGGTTTGACCCCGCAGAGACTACCG
GAGTTGGTAGAGAACAACCCGATGATTGCGATTGAGTGTCTGTTGAAGCT
GATGGGTTCGAGTCAGAAGAATGAGTATTTATCGGCGTTGGTCAATATGG
AGATGTCGCTACATTCGATGGAGGTGGTGAACAGGCTTACGACGGTAGTT
CCCTTGCCGACCGAATTCATTCATTTGTACATCTCGAATTGTATCTCGTC
CTGTGAGAACATCAAAGATAAGTACATGCAGAACCGCCTGGTTAGGTTGG
TGTGTGTCTTCTTGCAGAGCCTGATACGGAATAAGATTATAAATGTCCAG
GATCTCTACATTGAGGTGCAGGCGTTCTGCATCGAGTTTTCCCGGATTCG
GGAGGCGGCAGGTTTGTTCCGGTTGCTCAAGACGCTGGAATGAGAAAATG
AAAGAGAAGAAGGAAAAACATGAGAATTTCCCCCTTCTTTATAATCGATG
TGCCTCACACATCGGGTCGTGTTACCATGGTATCCGGATGGAATGCTTCA
AAGCTTTGTAGCTTTATGTTTCTTTATTATCACCAGCACCCAGGAAACAT
AGACACACGCAGGAGCCTGTCGGCAAGATAGAGACTGCTTGGTCTGTCGT
GGCGTCTGACGATCAAAAGCACAAAACAGAAGGGTTGAGGGCCCCAAATC
GAGCTGAATTGAACGTGAGTACGTTAGAATGTTTCAGAAATGTTCGTCTT
CATCTTTCTCACCTGAGAAAGGAAACACATGAAGCGAGAACTCATTCAAC
ACCGATCCGTGCTCGGACACATATATTATTCAACCGTTCATATTATTCAA
CCGTTCACAACGGCTTGTTGCTTCTTCAATTTGGGTGCCTCCATCTATCT
GCCTATAGCTTCTCCTACCTCCTTTCACCTGTCCCTTCTCCTTCCCCCCT
CCTTATAACACATTCATCACCAGTTGTGCGTACTCTTTCTCCTCTCCCGT
CTCCTGCGGCAGATACTCACCCACCTCCTCCCTCGTCACCCAAACAAACT
CTTCCACCCCCTCCTCCACCACCCTTCCCCTCCCCTTCAAATGCTGCGCC
CGGTAAAAGAAGACCTTCTCTCCGTACACATTTCCCCCTGCCCCTACTGA
TGATGCCCCTGCGGTCGCTGCTGGCACCCTCCAATGCATCCCTACTGGAG
CGTTCGACGGCATATAGGCCTCAAACTTCTCCCCCAAAAACCTTCCCACC
GTCGCCTCGTGAGTCCTCCTCATTGAATCCCTTCCGTCCTTTCCTCCTTT
CCCCAATACCGCCATAGGTAGATCCCACCTATCCCCCGTGATGGGCCCTT
TGACCAACAGGAACAAACGTTCGCTTAACGCCCGGTTTAACGTCGTCCGA
TCATTTAAACGGTCAGCTTTCGTGACGCGTGGGGCAAGCTTGAAGGGCAA
CTCGGGCAGAATCTCGGCATCCGGACGGTCCATCTCGTTGGCTTGACCCA
TCACATCGAGCTCTTTGGGGAAAGCCTAGGGAGAGGGGGACAAGGGAGGG
AGGGAGGGAGGGAGGGAAGCAGAGAAACGAGCTGAGGCACCGTGAATGGC
CCAGTGGCTTTCCAGATTTACGCGTAAAGACTAAATGGAGGTAGATTAGC
ATGTGGAAGGGAAACAGACATGTGATTTTAAAAAAAACGTTGCTTCACAA
TCTCCTTCTGCGACCCCAAGTGGACAGGCGGCTCCCAACCCTTGGGCAGG
GTTATGGAATAAGAGAAAGACCAAAACAAGGAAACAATAAGGGCGAAGGA
ATAGAAACAGATTGTATCTACTCTCCACGAGATGTTTCTCCCTTTTTCAT
TACCTTGCCGTGCCTTGCAATCTCCTCTTGCATTTCCATGTAGGCCGCTT
CCCAGGCCTCGGGTTCCTTCATTATAATGGGGAGGCGCTCCACGATGCTA
TTATAGTTCGTATTGGTGAAAGTGATAGTGTAAGGAGTTAAAATGCCTGT
ACGACGATAGCAGGTAGAGCTAAATCAAAGCGGATTAAAGCGGATGATGC
CTGCAGCAAGTGAAAAGAAGATTCCACGCAACACACCAATAGAGAGAGCC
CAGTGCTCCATTTACGTACCTAGCTGCGACAATGAGCCAGGGCAAATCAG
CTTGCTTAGCGGCCACTTCATGCTTGGCCAGCTGCTCTTCACGCTTTTTG
AGATACGCCGCTGTGACCGAGGGCCGCTTGCCCTTTTTCTTCTTGGGCTT
GAGACCACCCTTTCTAGTCTTGGTGAGGGGCGCGGACGCAGCAGCTAGTG
ATGAGGATAACGGTAGTTGTGCGGCAATCTTCGGTGTGGCCTTAGCAGCC
GTTGCGAATGTTCTTCTGGTGGTGGCCACTACTACTGCTGCGGTGGGGAG
AATGGTGGAAGAGGCTAATGTACTGCTGCTGCCGCTGCTGCTTGGGATGA
TGGTGGAGGAGGCAAGCCGTCTTGCTCCAAATAAAAGCGTCCTTTCGCCC
GCGCGCCAGCGCCGTAACCAAGATTGCAGCATACCTGTTGTGTCTGGGTT
CGTGGGGAAGGGTGTGGATGTGAAAGGCCTCACAAGGGAGCGTATCAGAA
GCATGGATGGACGCAATAAAGGCAAGGATCCTTCATGACGACGCCGACGA
GCGACGATACGACTTGTACCTGTTCCTTTAGAGTGCGTCTTTTAGAAAAG
GATGTTTAAGGCGCTTACCGGAGGTGGCCAACATCATACCCTGTATAGCA
TAACGTCCTCACGGGCAAGGCGCTCTGGTATTTTCCGATGATATCATCTC
TGGGCTTGTGCGGCTCGAGA

Coding sequence (CDS) from alignment at scaffold_18:313887..317006-

>mRNA_6630 ID=mRNA_6630|Name=jgi.p|Nanoce1779_2|597532|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_18:313887..317006- (Nannochloropsis oceanica)
ATGCTGTCGCTATTGAGTTTTGAGCCTGAATTTGTGAGGCCGCCCCCGCC
AGTGCTGGAAGTGGGGGAGACAGAGTGGATTTGGTTGAATCCTGATTATG
CCCCGAAGCTGCTGTGGGACGTGGCGATGGGTCAGGATGATGGCAAGGGG
GCCGAGGTGAGAGAACTGATGGCGAAGGCCTTTAAGGGTCCCTTGGTCCC
GCAGCAGCAGCAGCAGGTGTTAAGGGAACTGGAGAGCGACGCGAGGCTCG
TGCATCATTGTGGTTTGACCCCGCAGAGACTACCGGAGTTGGTAGAGAAC
AACCCGATGATTGCGATTGAGTGTCTGTTGAAGCTGATGGGTTCGAGTCA
GAAGAATGAGTATTTATCGGCGTTGGTCAATATGGAGATGTCGCTACATT
CGATGGAGGTGGTGAACAGGCTTACGACGGTAGTTCCCTTGCCGACCGAA
TTCATTCATTTGTACATCTCGAATTGTATCTCGTCCTGTGAGAACATCAA
AGATAAGTACATGCAGAACCGCCTGGTTAGGTTGGTGTGTGTCTTCTTGC
AGAGCCTGATACGGAATAAGATTATAAATGTCCAGGATCTCTACATTGAG
GTGCAGGCGTTCTGCATCGAGTTTTCCCGGATTCGGGAGGCGGCAGGTTT
GTTCCGGTTGCTCAAGACGCTGGAATGA

Synonyms

Publications