jgi.p|Nanoce1779_2|652715, mRNA_663 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|652715
Unique Name	mRNA_663
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2721
Alignment location	scaffold_2:133483..136203 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	652801
Track	FilteredModels2
ProteinId	652715

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:133483..136203 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|652715	gene_663	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|652715	mRNA_663-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_663	CDS_663	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:133483..136203+
coding sequence from alignment at scaffold_2:133483..136203+

mRNA sequence

>mRNA_663 ID=mRNA_663|Name=jgi.p|Nanoce1779_2|652715|organism=Nannochloropsis oceanica|type=mRNA|length=2721bp
GTTCACCCATACACGTTTTACTATGCACAAACTCACAAGCAGGTCCATTA
TCACGAATCAAAATGGTCTCGGAAAAGGTACTATTATCCTCGTCCTTACC
CATGGTCGACGAGAGTCCTCTTAAACAAATTCCCCAGCAAGTCGCCCTTT
ACCGCGCCGCTTTCTTGGCACGAATGCAGACGAGTCTGGAGGATGTGCAG
GCATTGGGCCAGGAAACTGACGCCTTGAAAGCCCAGATATGTCAACGCAA
TGGGCGGCGGGCCGATGCACGGATGGTGCTGCTGCAAGGAGCGGACAGGC
GGTCGCAAAATGAGGAGATTGACAGGCGTTGGGAACACCTGCTCCTTACC
TCTTCTGTCCCGCCCGATCAGATCCAGACTTCCTCTGATGGTAGCAGCGC
GAAGATTATTGAGAATGACAGCAAAGATTCCATCCCGCTCCTTGAATTGT
ATCGGGAGCTCGAGGCGCAGCGCGGGGCTTGCACAGCCATGCTTCAGTCC
AAGAACGACCTCATTCAAGAAGCCCAAGCGCAGCTCACGGAGCATGAAGA
GGAATACGTCCAAGCCATTTCACGATATGGCCTAGAGATCGAAAATATGG
TTTTAAAGATGCGTGCGGACAGCAAGGCCTTGCAGGACCACTACGAGCGA
GAGATGGATGCCTTGGAGGCCACCTTTGTGACGGAGCGGGAGGGTATGCA
GCAGGCGCATCAGATCACTATGGACGGGCTTGTGGCTCAGCAGAAAGCAG
CTGATCTCCGGCATTCTCAAGATGCCCAAGAGGGGGAAGAACGCTTTCAG
CGCGAGCTGGAAGCGTTGCGAGTGCAGGATGGGGAGGATTACCACCAGCT
TCAGATTCGGTTGGAAATGGAGCGAGACGCTGCGGACCGGCAAGTGGAAG
AGGTCATGACCACGACGCAAGTGCAGCAAGAAAAGCTTGTGCACGACCAC
CGCATTCTGACGGATCGTGAAGTAGAGAAATCGGCGAGCCTGGCGGCGCA
GAAAATGAAGTTGGTAAAGCTGAGGGATTCGGTACTGGCCTTGACCTCCG
AGTACAAGGAACACGACGCGCGGGAGAAAAAGCGATTCGAGGAACTGACG
CAGGAGGTCTGTCGCCTGCATAAGAAGTACAAGGACTTGCAGCAACGTTT
TCGGCATTTTTCTTGCGCGGATCGGGATAGGTATGACAGTGCATGGGCGC
GGCACGAGGATGAGATTCAAGCAGCGGTTGAGAAGGTGCTGGCGATTGAC
GAGCTTCTATTTGTGCAGCTTCTGGGGCAAGAATGGACGCCTCCGCCGAG
GAACGACTTGTTGCTGGAGTTGGATGAAGATAAGAAACAATATGCCGGTG
GTGACGAAGGCCCCAACCCGGTGGGCGCGCACTCGAAGGGGAAGGAGGAA
GAGGGGGATGGAAGAGCTGCCACGGCCGTTGGGGGCGAGGAGGAGGAGAA
GGAGAAGGATGGCGCTTTCGGCACAGGAAACGGACGTCAGGAAATAGATT
CAGCGCTGGTGATGGAGCAGGTATTGATGAACAAGATGCTTGGACTCATC
ATCCAGGAAGCTGATTTTCTTCTTCTTGAGGACACAGAAGCCGTAGAGGC
ACAGCAGAAAAAGGCGGCGGCAGCGGCAGAGAAGAAAGCCAAGAGCGGAA
CAAGGCCCAAGGCTGATTGGGTTAATACGGTGGCCAAGGTAGTGGCGGAG
TTCCCGCCACTCCTGCGCAGAGATAAGGATACGAAGAGGAGCAGCAAGAG
CGTGGAGATAAAGGCCCAAACGGAAAAGAAGGACGGCGAAGCAGAGACGG
CTACGGTCCTTATGCCTGAGGAGGCTGCTGTGGCTGCGCAGGAGGTGCAT
GCAATTGCCGCAAACGAGGGCAATGAACTGACACAAGCAGCGGAAGAAGC
GATGCTGGTCGTACCAGCGGCAGAAGAAGCAGCCACAGCAGCTGCAAAGG
CCGCGCAGGCTGAGGAAGAGGACCTGCTGGGTGCATCACAATATGGCTGT
CAGCGCGTACTCCGTGCCCTGGGCATCCAGGACGAGGCTGAGGCCCGGAC
GTTGCTCACGTATTTCCTTAAAAAGAAGGAACGGAAAGAGGGAGAAAGCA
GAGAGGGGGATGGGGGGGAGCAAAAGGAGGACGGGCTGGAAGAGGTAGGG
ATGATCCGGAAGCTTGCACTACTTTTGCCGGCCGCTGCGTTTGCCATTTC
TCCGCAAGACATGTATGTGATGATCGGACCTGAGGAGGTGATAGGCGCTT
TGCACCGTTTCCTCTTTGACAAAAAGAGGCTGGAAGAGAATGCATGCAAG
CAGCAGCTACGGCAGCGCCAGCGTCGGCATCGTCGGCAGAGCCTGAGCGG
GAGCTGCAGTGGTCAAGGAGGAGGTACCGAGGGAGGAGAAGGAGATAGGA
CTTTGTGGCGAAGCCTGGCAAACGTCTTGCCGGCAGCGCATTTCCAGACG
TGGCAAGACTTGGAGCAGTCACTCTTGGCGTACCATCGCTTGCTGGAGGA
GCGAGGAAGGGTGTTGGGTTCGATGGAACGGTTGGAGGAGGAGAATGCCA
GGTTGCGACTGACTGTGAGGGCGTGTGTCGAAGACAGGGTGAATGGGGAG
TTGTTGGTGCCTCCGTTTATGGATTCAGGAGCAGGAGGGGAAGGAGAGGG
AGAAGAAGAGGGGCCTCGATAGAGGAAAGAGATATTGGAGGGAGAGGCAA
GGATGGTATGAGAAATGAAGC

protein sequence of jgi.p|Nanoce1779_2|652715

>mRNA_663-protein ID=mRNA_663-protein|Name=jgi.p|Nanoce1779_2|652715|organism=Nannochloropsis oceanica|type=polypeptide|length=870bp
MVSEKVLLSSSLPMVDESPLKQIPQQVALYRAAFLARMQTSLEDVQALGQ
ETDALKAQICQRNGRRADARMVLLQGADRRSQNEEIDRRWEHLLLTSSVP
PDQIQTSSDGSSAKIIENDSKDSIPLLELYRELEAQRGACTAMLQSKNDL
IQEAQAQLTEHEEEYVQAISRYGLEIENMVLKMRADSKALQDHYEREMDA
LEATFVTEREGMQQAHQITMDGLVAQQKAADLRHSQDAQEGEERFQRELE
ALRVQDGEDYHQLQIRLEMERDAADRQVEEVMTTTQVQQEKLVHDHRILT
DREVEKSASLAAQKMKLVKLRDSVLALTSEYKEHDAREKKRFEELTQEVC
RLHKKYKDLQQRFRHFSCADRDRYDSAWARHEDEIQAAVEKVLAIDELLF
VQLLGQEWTPPPRNDLLLELDEDKKQYAGGDEGPNPVGAHSKGKEEEGDG
RAATAVGGEEEEKEKDGAFGTGNGRQEIDSALVMEQVLMNKMLGLIIQEA
DFLLLEDTEAVEAQQKKAAAAAEKKAKSGTRPKADWVNTVAKVVAEFPPL
LRRDKDTKRSSKSVEIKAQTEKKDGEAETATVLMPEEAAVAAQEVHAIAA
NEGNELTQAAEEAMLVVPAAEEAATAAAKAAQAEEEDLLGASQYGCQRVL
RALGIQDEAEARTLLTYFLKKKERKEGESREGDGGEQKEDGLEEVGMIRK
LALLLPAAAFAISPQDMYVMIGPEEVIGALHRFLFDKKRLEENACKQQLR
QRQRRHRRQSLSGSCSGQGGGTEGGEGDRTLWRSLANVLPAAHFQTWQDL
EQSLLAYHRLLEERGRVLGSMERLEEENARLRLTVRACVEDRVNGELLVP
PFMDSGAGGEGEGEEEGPR*

mRNA from alignment at scaffold_2:133483..136203+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_663 ID=mRNA_663|Name=jgi.p|Nanoce1779_2|652715|organism=Nannochloropsis oceanica|type=mRNA|length=2721bp|location=Sequence derived from alignment at scaffold_2:133483..136203+ (Nannochloropsis oceanica)
GTTCACCCATACACGTTTTACTATGCACAAACTCACAAGCAGGTCCATTA
TCACGAATCAAAATGGTCTCGGAAAAGGTACTATTATCCTCGTCCTTACC
CATGGTCGACGAGAGTCCTCTTAAACAAATTCCCCAGCAAGTCGCCCTTT
ACCGCGCCGCTTTCTTGGCACGAATGCAGACGAGTCTGGAGGATGTGCAG
GCATTGGGCCAGGAAACTGACGCCTTGAAAGCCCAGATATGTCAACGCAA
TGGGCGGCGGGCCGATGCACGGATGGTGCTGCTGCAAGGAGCGGACAGGC
GGTCGCAAAATGAGGAGATTGACAGGCGTTGGGAACACCTGCTCCTTACC
TCTTCTGTCCCGCCCGATCAGATCCAGACTTCCTCTGATGGTAGCAGCGC
GAAGATTATTGAGAATGACAGCAAAGATTCCATCCCGCTCCTTGAATTGT
ATCGGGAGCTCGAGGCGCAGCGCGGGGCTTGCACAGCCATGCTTCAGTCC
AAGAACGACCTCATTCAAGAAGCCCAAGCGCAGCTCACGGAGCATGAAGA
GGAATACGTCCAAGCCATTTCACGATATGGCCTAGAGATCGAAAATATGG
TTTTAAAGATGCGTGCGGACAGCAAGGCCTTGCAGGACCACTACGAGCGA
GAGATGGATGCCTTGGAGGCCACCTTTGTGACGGAGCGGGAGGGTATGCA
GCAGGCGCATCAGATCACTATGGACGGGCTTGTGGCTCAGCAGAAAGCAG
CTGATCTCCGGCATTCTCAAGATGCCCAAGAGGGGGAAGAACGCTTTCAG
CGCGAGCTGGAAGCGTTGCGAGTGCAGGATGGGGAGGATTACCACCAGCT
TCAGATTCGGTTGGAAATGGAGCGAGACGCTGCGGACCGGCAAGTGGAAG
AGGTCATGACCACGACGCAAGTGCAGCAAGAAAAGCTTGTGCACGACCAC
CGCATTCTGACGGATCGTGAAGTAGAGAAATCGGCGAGCCTGGCGGCGCA
GAAAATGAAGTTGGTAAAGCTGAGGGATTCGGTACTGGCCTTGACCTCCG
AGTACAAGGAACACGACGCGCGGGAGAAAAAGCGATTCGAGGAACTGACG
CAGGAGGTCTGTCGCCTGCATAAGAAGTACAAGGACTTGCAGCAACGTTT
TCGGCATTTTTCTTGCGCGGATCGGGATAGGTATGACAGTGCATGGGCGC
GGCACGAGGATGAGATTCAAGCAGCGGTTGAGAAGGTGCTGGCGATTGAC
GAGCTTCTATTTGTGCAGCTTCTGGGGCAAGAATGGACGCCTCCGCCGAG
GAACGACTTGTTGCTGGAGTTGGATGAAGATAAGAAACAATATGCCGGTG
GTGACGAAGGCCCCAACCCGGTGGGCGCGCACTCGAAGGGGAAGGAGGAA
GAGGGGGATGGAAGAGCTGCCACGGCCGTTGGGGGCGAGGAGGAGGAGAA
GGAGAAGGATGGCGCTTTCGGCACAGGAAACGGACGTCAGGAAATAGATT
CAGCGCTGGTGATGGAGCAGGTATTGATGAACAAGATGCTTGGACTCATC
ATCCAGGAAGCTGATTTTCTTCTTCTTGAGGACACAGAAGCCGTAGAGGC
ACAGCAGAAAAAGGCGGCGGCAGCGGCAGAGAAGAAAGCCAAGAGCGGAA
CAAGGCCCAAGGCTGATTGGGTTAATACGGTGGCCAAGGTAGTGGCGGAG
TTCCCGCCACTCCTGCGCAGAGATAAGGATACGAAGAGGAGCAGCAAGAG
CGTGGAGATAAAGGCCCAAACGGAAAAGAAGGACGGCGAAGCAGAGACGG
CTACGGTCCTTATGCCTGAGGAGGCTGCTGTGGCTGCGCAGGAGGTGCAT
GCAATTGCCGCAAACGAGGGCAATGAACTGACACAAGCAGCGGAAGAAGC
GATGCTGGTCGTACCAGCGGCAGAAGAAGCAGCCACAGCAGCTGCAAAGG
CCGCGCAGGCTGAGGAAGAGGACCTGCTGGGTGCATCACAATATGGCTGT
CAGCGCGTACTCCGTGCCCTGGGCATCCAGGACGAGGCTGAGGCCCGGAC
GTTGCTCACGTATTTCCTTAAAAAGAAGGAACGGAAAGAGGGAGAAAGCA
GAGAGGGGGATGGGGGGGAGCAAAAGGAGGACGGGCTGGAAGAGGTAGGG
ATGATCCGGAAGCTTGCACTACTTTTGCCGGCCGCTGCGTTTGCCATTTC
TCCGCAAGACATGTATGTGATGATCGGACCTGAGGAGGTGATAGGCGCTT
TGCACCGTTTCCTCTTTGACAAAAAGAGGCTGGAAGAGAATGCATGCAAG
CAGCAGCTACGGCAGCGCCAGCGTCGGCATCGTCGGCAGAGCCTGAGCGG
GAGCTGCAGTGGTCAAGGAGGAGGTACCGAGGGAGGAGAAGGAGATAGGA
CTTTGTGGCGAAGCCTGGCAAACGTCTTGCCGGCAGCGCATTTCCAGACG
TGGCAAGACTTGGAGCAGTCACTCTTGGCGTACCATCGCTTGCTGGAGGA
GCGAGGAAGGGTGTTGGGTTCGATGGAACGGTTGGAGGAGGAGAATGCCA
GGTTGCGACTGACTGTGAGGGCGTGTGTCGAAGACAGGGTGAATGGGGAG
TTGTTGGTGCCTCCGTTTATGGATTCAGGAGCAGGAGGGGAAGGAGAGGG
AGAAGAAGAGGGGCCTCGATAGAGGAAAGAGATATTGGAGGGAGAGGCAA
GGATGGTATGAGAAATGAAGC

Coding sequence (CDS) from alignment at scaffold_2:133483..136203+

>mRNA_663 ID=mRNA_663|Name=jgi.p|Nanoce1779_2|652715|organism=Nannochloropsis oceanica|type=CDS|length=2610bp|location=Sequence derived from alignment at scaffold_2:133483..136203+ (Nannochloropsis oceanica)
ATGGTCTCGGAAAAGGTACTATTATCCTCGTCCTTACCCATGGTCGACGA
GAGTCCTCTTAAACAAATTCCCCAGCAAGTCGCCCTTTACCGCGCCGCTT
TCTTGGCACGAATGCAGACGAGTCTGGAGGATGTGCAGGCATTGGGCCAG
GAAACTGACGCCTTGAAAGCCCAGATATGTCAACGCAATGGGCGGCGGGC
CGATGCACGGATGGTGCTGCTGCAAGGAGCGGACAGGCGGTCGCAAAATG
AGGAGATTGACAGGCGTTGGGAACACCTGCTCCTTACCTCTTCTGTCCCG
CCCGATCAGATCCAGACTTCCTCTGATGGTAGCAGCGCGAAGATTATTGA
GAATGACAGCAAAGATTCCATCCCGCTCCTTGAATTGTATCGGGAGCTCG
AGGCGCAGCGCGGGGCTTGCACAGCCATGCTTCAGTCCAAGAACGACCTC
ATTCAAGAAGCCCAAGCGCAGCTCACGGAGCATGAAGAGGAATACGTCCA
AGCCATTTCACGATATGGCCTAGAGATCGAAAATATGGTTTTAAAGATGC
GTGCGGACAGCAAGGCCTTGCAGGACCACTACGAGCGAGAGATGGATGCC
TTGGAGGCCACCTTTGTGACGGAGCGGGAGGGTATGCAGCAGGCGCATCA
GATCACTATGGACGGGCTTGTGGCTCAGCAGAAAGCAGCTGATCTCCGGC
ATTCTCAAGATGCCCAAGAGGGGGAAGAACGCTTTCAGCGCGAGCTGGAA
GCGTTGCGAGTGCAGGATGGGGAGGATTACCACCAGCTTCAGATTCGGTT
GGAAATGGAGCGAGACGCTGCGGACCGGCAAGTGGAAGAGGTCATGACCA
CGACGCAAGTGCAGCAAGAAAAGCTTGTGCACGACCACCGCATTCTGACG
GATCGTGAAGTAGAGAAATCGGCGAGCCTGGCGGCGCAGAAAATGAAGTT
GGTAAAGCTGAGGGATTCGGTACTGGCCTTGACCTCCGAGTACAAGGAAC
ACGACGCGCGGGAGAAAAAGCGATTCGAGGAACTGACGCAGGAGGTCTGT
CGCCTGCATAAGAAGTACAAGGACTTGCAGCAACGTTTTCGGCATTTTTC
TTGCGCGGATCGGGATAGGTATGACAGTGCATGGGCGCGGCACGAGGATG
AGATTCAAGCAGCGGTTGAGAAGGTGCTGGCGATTGACGAGCTTCTATTT
GTGCAGCTTCTGGGGCAAGAATGGACGCCTCCGCCGAGGAACGACTTGTT
GCTGGAGTTGGATGAAGATAAGAAACAATATGCCGGTGGTGACGAAGGCC
CCAACCCGGTGGGCGCGCACTCGAAGGGGAAGGAGGAAGAGGGGGATGGA
AGAGCTGCCACGGCCGTTGGGGGCGAGGAGGAGGAGAAGGAGAAGGATGG
CGCTTTCGGCACAGGAAACGGACGTCAGGAAATAGATTCAGCGCTGGTGA
TGGAGCAGGTATTGATGAACAAGATGCTTGGACTCATCATCCAGGAAGCT
GATTTTCTTCTTCTTGAGGACACAGAAGCCGTAGAGGCACAGCAGAAAAA
GGCGGCGGCAGCGGCAGAGAAGAAAGCCAAGAGCGGAACAAGGCCCAAGG
CTGATTGGGTTAATACGGTGGCCAAGGTAGTGGCGGAGTTCCCGCCACTC
CTGCGCAGAGATAAGGATACGAAGAGGAGCAGCAAGAGCGTGGAGATAAA
GGCCCAAACGGAAAAGAAGGACGGCGAAGCAGAGACGGCTACGGTCCTTA
TGCCTGAGGAGGCTGCTGTGGCTGCGCAGGAGGTGCATGCAATTGCCGCA
AACGAGGGCAATGAACTGACACAAGCAGCGGAAGAAGCGATGCTGGTCGT
ACCAGCGGCAGAAGAAGCAGCCACAGCAGCTGCAAAGGCCGCGCAGGCTG
AGGAAGAGGACCTGCTGGGTGCATCACAATATGGCTGTCAGCGCGTACTC
CGTGCCCTGGGCATCCAGGACGAGGCTGAGGCCCGGACGTTGCTCACGTA
TTTCCTTAAAAAGAAGGAACGGAAAGAGGGAGAAAGCAGAGAGGGGGATG
GGGGGGAGCAAAAGGAGGACGGGCTGGAAGAGGTAGGGATGATCCGGAAG
CTTGCACTACTTTTGCCGGCCGCTGCGTTTGCCATTTCTCCGCAAGACAT
GTATGTGATGATCGGACCTGAGGAGGTGATAGGCGCTTTGCACCGTTTCC
TCTTTGACAAAAAGAGGCTGGAAGAGAATGCATGCAAGCAGCAGCTACGG
CAGCGCCAGCGTCGGCATCGTCGGCAGAGCCTGAGCGGGAGCTGCAGTGG
TCAAGGAGGAGGTACCGAGGGAGGAGAAGGAGATAGGACTTTGTGGCGAA
GCCTGGCAAACGTCTTGCCGGCAGCGCATTTCCAGACGTGGCAAGACTTG
GAGCAGTCACTCTTGGCGTACCATCGCTTGCTGGAGGAGCGAGGAAGGGT
GTTGGGTTCGATGGAACGGTTGGAGGAGGAGAATGCCAGGTTGCGACTGA
CTGTGAGGGCGTGTGTCGAAGACAGGGTGAATGGGGAGTTGTTGGTGCCT
CCGTTTATGGATTCAGGAGCAGGAGGGGAAGGAGAGGGAGAAGAAGAGGG
GCCTCGATAG

Synonyms

Publications