jgi.p|Nanoce1779_2|123200, mRNA_6629 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|123200
Unique Name	mRNA_6629
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1367
Alignment location	scaffold_18:313931..315923 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	123286
Track	FilteredModels2
ProteinId	123200

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:313931..315923 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|123200	gene_6629	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|123200	mRNA_6629-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6629	CDS_6629	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:313931..315923+
coding sequence from alignment at scaffold_18:313931..315923+

mRNA sequence

>mRNA_6629 ID=mRNA_6629|Name=jgi.p|Nanoce1779_2|123200|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp
AGAGCGCCTTGCCCGTGAGGACGTTATGCTATACAGGGTATGATGTTGGC
CACCTCCGGTAAGCGCCTTAAACATCCTTTTCTAAAAGACGCACTCTAAA
GGAACAGACACAACAGGTATGCTGCAATCTTGGTTACGGCGCTGGCGCGC
GGGCGAAAGGACGCTTTTATTTGGAGCAAGACGGCTTGCCTCCTCCACCA
TCATCCCAAGCAGCAGCGGCAGCAGCAGTACATTAGCCTCTTCCACCATT
CTCCCCACCGCAGCAGTAGTAGTGGCCACCACCAGAAGAACATTCGCAAC
GGCTGCTAAGGCCACACCGAAGATTGCCGCACAACTACCGTTATCCTCAT
CACTAGCTGCTGCGTCCGCGCCCCTCACCAAGACTAGAAAGGGTGGTCTC
AAGCCCAAGAAGAAAAAGGGCAAGCGGCCCTCGGTCACAGCGGCGTATCT
CAAAAAGCGTGAAGAGCAGCTGGCCAAGCATGAAGTGGCCGCTAAGCAAG
CTGATTTGCCCTGGCTCATTGTCGCAGCTAGCATCGTGGAGCGCCTCCCC
ATTATAATGAAGGAACCCGAGGCCTGGGAAGCGGCCTACATGGAAATGCA
AGAGGAGATTGCAAGGCACGGCAAGGCTTTCCCCAAAGAGCTCGATGTGA
TGGGTCAAGCCAACGAGATGGACCGTCCGGATGCCGAGATTCTGCCCGAG
TTGCCCTTCAAGCTTGCCCCACGCGTCACGAAAGCTGACCGTTTAAATGA
TCGGACGACGTTAAACCGGGCGTTAAGCGAACGTTTGTTCCTGTTGGTCA
AAGGGCCCATCACGGGGGATAGGTGGGATCTACCTATGGCGGTATTGGGG
AAAGGAGGAAAGGACGGAAGGGATTCAATGAGGAGGACTCACGAGGCGAC
GGTGGGAAGGTTTTTGGGGGAGAAGTTTGAGGCCTATATGCCGTCGAACG
CTCCAGTAGGGATGCATTGGAGGGTGCCAGCAGCGACCGCAGGGGCATCA
TCAGTAGGGGCAGGGGGAAATGTGTACGGAGAGAAGGTCTTCTTTTACCG
GGCGCAGCATTTGAAGGGGAGGGGAAGGGTGGTGGAGGAGGGGGTGGAAG
AGTTTGTTTGGGTGACGAGGGAGGAGGTGGGTGAGTATCTGCCGCAGGAG
ACGGGAGAGGAGAAAGAGTACGCACAACTGGTGATGAATGTGTTATAAGG
AGGGGGGAAGGAGAAGGGACAGGTGAAAGGAGGTAGGAGAAGCTATAGGC
AGATAGATGGAGGCACCCAAATTGAAGAAGCAACAAGCCGTTGTGAACGG
TTGAATAATATGAACGGTTGAATAATATATGTGTCCGAGCACGGATCGGT
GTTGAATGAGTTCTCGC

protein sequence of jgi.p|Nanoce1779_2|123200

>mRNA_6629-protein ID=mRNA_6629-protein|Name=jgi.p|Nanoce1779_2|123200|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MLQSWLRRWRAGERTLLFGARRLASSTIIPSSSGSSSTLASSTILPTAAV
VVATTRRTFATAAKATPKIAAQLPLSSSLAAASAPLTKTRKGGLKPKKKK
GKRPSVTAAYLKKREEQLAKHEVAAKQADLPWLIVAASIVERLPIIMKEP
EAWEAAYMEMQEEIARHGKAFPKELDVMGQANEMDRPDAEILPELPFKLA
PRVTKADRLNDRTTLNRALSERLFLLVKGPITGDRWDLPMAVLGKGGKDG
RDSMRRTHEATVGRFLGEKFEAYMPSNAPVGMHWRVPAATAGASSVGAGG
NVYGEKVFFYRAQHLKGRGRVVEEGVEEFVWVTREEVGEYLPQETGEEKE
YAQLVMNVL*

mRNA from alignment at scaffold_18:313931..315923+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6629 ID=mRNA_6629|Name=jgi.p|Nanoce1779_2|123200|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp|location=Sequence derived from alignment at scaffold_18:313931..315923+ (Nannochloropsis oceanica)
AGAGCGCCTTGCCCGTGAGGACGTTATGCTATACAGGGTATGATGTTGGC
CACCTCCGGTAAGCGCCTTAAACATCCTTTTCTAAAAGACGCACTCTAAA
GGAACAGGTACAAGTCGTATCGTCGCTCGTCGGCGTCGTCATGAAGGATC
CTTGCCTTTATTGCGTCCATCCATGCTTCTGATACGCTCCCTTGTGAGGC
CTTTCACATCCACACCCTTCCCCACGAACCCAGACACAACAGGTATGCTG
CAATCTTGGTTACGGCGCTGGCGCGCGGGCGAAAGGACGCTTTTATTTGG
AGCAAGACGGCTTGCCTCCTCCACCATCATCCCAAGCAGCAGCGGCAGCA
GCAGTACATTAGCCTCTTCCACCATTCTCCCCACCGCAGCAGTAGTAGTG
GCCACCACCAGAAGAACATTCGCAACGGCTGCTAAGGCCACACCGAAGAT
TGCCGCACAACTACCGTTATCCTCATCACTAGCTGCTGCGTCCGCGCCCC
TCACCAAGACTAGAAAGGGTGGTCTCAAGCCCAAGAAGAAAAAGGGCAAG
CGGCCCTCGGTCACAGCGGCGTATCTCAAAAAGCGTGAAGAGCAGCTGGC
CAAGCATGAAGTGGCCGCTAAGCAAGCTGATTTGCCCTGGCTCATTGTCG
CAGCTAGGTACGTAAATGGAGCACTGGGCTCTCTCTATTGGTGTGTTGCG
TGGAATCTTCTTTTCACTTGCTGCAGGCATCATCCGCTTTAATCCGCTTT
GATTTAGCTCTACCTGCTATCGTCGTACAGGCATTTTAACTCCTTACACT
ATCACTTTCACCAATACGAACTATAATAGCATCGTGGAGCGCCTCCCCAT
TATAATGAAGGAACCCGAGGCCTGGGAAGCGGCCTACATGGAAATGCAAG
AGGAGATTGCAAGGCACGGCAAGGTAATGAAAAAGGGAGAAACATCTCGT
GGAGAGTAGATACAATCTGTTTCTATTCCTTCGCCCTTATTGTTTCCTTG
TTTTGGTCTTTCTCTTATTCCATAACCCTGCCCAAGGGTTGGGAGCCGCC
TGTCCACTTGGGGTCGCAGAAGGAGATTGTGAAGCAACGTTTTTTTTAAA
ATCACATGTCTGTTTCCCTTCCACATGCTAATCTACCTCCATTTAGTCTT
TACGCGTAAATCTGGAAAGCCACTGGGCCATTCACGGTGCCTCAGCTCGT
TTCTCTGCTTCCCTCCCTCCCTCCCTCCCTCCCTTGTCCCCCTCTCCCTA
GGCTTTCCCCAAAGAGCTCGATGTGATGGGTCAAGCCAACGAGATGGACC
GTCCGGATGCCGAGATTCTGCCCGAGTTGCCCTTCAAGCTTGCCCCACGC
GTCACGAAAGCTGACCGTTTAAATGATCGGACGACGTTAAACCGGGCGTT
AAGCGAACGTTTGTTCCTGTTGGTCAAAGGGCCCATCACGGGGGATAGGT
GGGATCTACCTATGGCGGTATTGGGGAAAGGAGGAAAGGACGGAAGGGAT
TCAATGAGGAGGACTCACGAGGCGACGGTGGGAAGGTTTTTGGGGGAGAA
GTTTGAGGCCTATATGCCGTCGAACGCTCCAGTAGGGATGCATTGGAGGG
TGCCAGCAGCGACCGCAGGGGCATCATCAGTAGGGGCAGGGGGAAATGTG
TACGGAGAGAAGGTCTTCTTTTACCGGGCGCAGCATTTGAAGGGGAGGGG
AAGGGTGGTGGAGGAGGGGGTGGAAGAGTTTGTTTGGGTGACGAGGGAGG
AGGTGGGTGAGTATCTGCCGCAGGAGACGGGAGAGGAGAAAGAGTACGCA
CAACTGGTGATGAATGTGTTATAAGGAGGGGGGAAGGAGAAGGGACAGGT
GAAAGGAGGTAGGAGAAGCTATAGGCAGATAGATGGAGGCACCCAAATTG
AAGAAGCAACAAGCCGTTGTGAACGGTTGAATAATATGAACGGTTGAATA
ATATATGTGTCCGAGCACGGATCGGTGTTGAATGAGTTCTCGC

Coding sequence (CDS) from alignment at scaffold_18:313931..315923+

>mRNA_6629 ID=mRNA_6629|Name=jgi.p|Nanoce1779_2|123200|organism=Nannochloropsis oceanica|type=CDS|length=3240bp|location=Sequence derived from alignment at scaffold_18:313931..315923+ (Nannochloropsis oceanica)
ATGCTGCAATCTTGGTTACGGCGCTGGCGCGCGGGCGAAAGGACGCTTTT
ATTTGGAGCAAGACGGCTTGCCTCCTCCACCATCATCCCAAGCAGCAGCG
GCAGCAGCAGTACATTAGCCTCTTCCACCATTCTCCCCACCGCAGCAGTA
GTAGTGGCCACCACCAGAAGAACATTCGCAACGGCTGCTAAGGCCACACC
GAAGATTGCCGCACAACTACCGTTATCCTCATCACTAGCTGCTGCGTCCG
CGCCCCTCACCAAGACTAGAAAGGGTGGTCTCAAGCCCAAGAAGAAAAAG
GGCAAGCGGCCCTCGGTCACAGCGGCGTATCTCAAAAAGCGTGAAGAGCA
GCTGGCCAAGCATGAAGTGGCCGCTAAGCAAGCTGATTTGCCCTGGCTCA
TTGTCGCAGCTAGCATCGTGGAGCGCCTCCCCATTATAATGAAGGAACCC
GAGGCCTGGGAAGCGGCCTACATGGAAATGCAAGAGGAGATTGCAAGGCA
CGGCAAGGCTTTCCCCAAAGAGCTCGATGTGATGGGTCAAGCCAACGAGA
TGGACCGTCCGGATGCCGAGATTCTGCCCGAGTTGCCCTTCAAGCTTGCC
CCACGCGTCACGAAAGCTGACCGTTTAAATGATCGGACGACGTTAAACCG
GGCGTTAAGCGAACGTTTGTTCCTGTTGGTCAAAGGGCCCATCACGGGGG
ATAGGTGGGATCTACCTATGGCGGTATTGGGGAAAGGAGGAAAGGACGGA
AGGGATTCAATGAGGAGGACTCACGAGGCGACGGTGGGAAGGTTTTTGGG
GGAGAAGTTTGAGGCCTATATGCCGTCGAACGCTCCAGTAGGGATGCATT
GGAGGGTGCCAGCAGCGACCGCAGGGGCATCATCAGTAGGGGCAGGGGGA
AATGTGTACGGAGAGAAGGTCTTCTTTTACCGGGCGCAGCATTTGAAGGG
GAGGGGAAGGGTGGTGGAGGAGGGGGTGGAAGAGTTTGTTTGGGTGACGA
GGGAGGAGGTGGGTGAGTATCTGCCGCAGGAGACGGGAGAGGAGAAAGAG
TACGCACAACTGGTGATGAATGTGTTATAAATGCTGCAATCTTGGTTACG
GCGCTGGCGCGCGGGCGAAAGGACGCTTTTATTTGGAGCAAGACGGCTTG
CCTCCTCCACCATCATCCCAAGCAGCAGCGGCAGCAGCAGTACATTAGCC
TCTTCCACCATTCTCCCCACCGCAGCAGTAGTAGTGGCCACCACCAGAAG
AACATTCGCAACGGCTGCTAAGGCCACACCGAAGATTGCCGCACAACTAC
CGTTATCCTCATCACTAGCTGCTGCGTCCGCGCCCCTCACCAAGACTAGA
AAGGGTGGTCTCAAGCCCAAGAAGAAAAAGGGCAAGCGGCCCTCGGTCAC
AGCGGCGTATCTCAAAAAGCGTGAAGAGCAGCTGGCCAAGCATGAAGTGG
CCGCTAAGCAAGCTGATTTGCCCTGGCTCATTGTCGCAGCTAGCATCGTG
GAGCGCCTCCCCATTATAATGAAGGAACCCGAGGCCTGGGAAGCGGCCTA
CATGGAAATGCAAGAGGAGATTGCAAGGCACGGCAAGGCTTTCCCCAAAG
AGCTCGATGTGATGGGTCAAGCCAACGAGATGGACCGTCCGGATGCCGAG
ATTCTGCCCGAGTTGCCCTTCAAGCTTGCCCCACGCGTCACGAAAGCTGA
CCGTTTAAATGATCGGACGACGTTAAACCGGGCGTTAAGCGAACGTTTGT
TCCTGTTGGTCAAAGGGCCCATCACGGGGGATAGGTGGGATCTACCTATG
GCGGTATTGGGGAAAGGAGGAAAGGACGGAAGGGATTCAATGAGGAGGAC
TCACGAGGCGACGGTGGGAAGGTTTTTGGGGGAGAAGTTTGAGGCCTATA
TGCCGTCGAACGCTCCAGTAGGGATGCATTGGAGGGTGCCAGCAGCGACC
GCAGGGGCATCATCAGTAGGGGCAGGGGGAAATGTGTACGGAGAGAAGGT
CTTCTTTTACCGGGCGCAGCATTTGAAGGGGAGGGGAAGGGTGGTGGAGG
AGGGGGTGGAAGAGTTTGTTTGGGTGACGAGGGAGGAGGTGGGTGAGTAT
CTGCCGCAGGAGACGGGAGAGGAGAAAGAGTACGCACAACTGGTGATGAA
TGTGTTATAAATGCTGCAATCTTGGTTACGGCGCTGGCGCGCGGGCGAAA
GGACGCTTTTATTTGGAGCAAGACGGCTTGCCTCCTCCACCATCATCCCA
AGCAGCAGCGGCAGCAGCAGTACATTAGCCTCTTCCACCATTCTCCCCAC
CGCAGCAGTAGTAGTGGCCACCACCAGAAGAACATTCGCAACGGCTGCTA
AGGCCACACCGAAGATTGCCGCACAACTACCGTTATCCTCATCACTAGCT
GCTGCGTCCGCGCCCCTCACCAAGACTAGAAAGGGTGGTCTCAAGCCCAA
GAAGAAAAAGGGCAAGCGGCCCTCGGTCACAGCGGCGTATCTCAAAAAGC
GTGAAGAGCAGCTGGCCAAGCATGAAGTGGCCGCTAAGCAAGCTGATTTG
CCCTGGCTCATTGTCGCAGCTAGCATCGTGGAGCGCCTCCCCATTATAAT
GAAGGAACCCGAGGCCTGGGAAGCGGCCTACATGGAAATGCAAGAGGAGA
TTGCAAGGCACGGCAAGGCTTTCCCCAAAGAGCTCGATGTGATGGGTCAA
GCCAACGAGATGGACCGTCCGGATGCCGAGATTCTGCCCGAGTTGCCCTT
CAAGCTTGCCCCACGCGTCACGAAAGCTGACCGTTTAAATGATCGGACGA
CGTTAAACCGGGCGTTAAGCGAACGTTTGTTCCTGTTGGTCAAAGGGCCC
ATCACGGGGGATAGGTGGGATCTACCTATGGCGGTATTGGGGAAAGGAGG
AAAGGACGGAAGGGATTCAATGAGGAGGACTCACGAGGCGACGGTGGGAA
GGTTTTTGGGGGAGAAGTTTGAGGCCTATATGCCGTCGAACGCTCCAGTA
GGGATGCATTGGAGGGTGCCAGCAGCGACCGCAGGGGCATCATCAGTAGG
GGCAGGGGGAAATGTGTACGGAGAGAAGGTCTTCTTTTACCGGGCGCAGC
ATTTGAAGGGGAGGGGAAGGGTGGTGGAGGAGGGGGTGGAAGAGTTTGTT
TGGGTGACGAGGGAGGAGGTGGGTGAGTATCTGCCGCAGGAGACGGGAGA
GGAGAAAGAGTACGCACAACTGGTGATGAATGTGTTATAA

Synonyms

Publications