jgi.p|Nanoce1779_2|597530, mRNA_6628 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597530
Unique NamemRNA_6628
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length712
Alignment locationscaffold_18:313098..313809 -

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Properties
Property NameValue
TranscriptId597616
TrackFilteredModels2
ProteinId597530
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:313098..313809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597530gene_6628Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597530mRNA_6628-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6628CDS_6628Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6628 ID=mRNA_6628|Name=jgi.p|Nanoce1779_2|597530|organism=Nannochloropsis oceanica|type=mRNA|length=712bp
ACAGGCAGCATGGAATCGATAGCGCCCCAAAGTCCTGGTCAACGTCGTCG
GCCTCGAAATTTCTTCCCACCGGACATTCCCGGGCAGCGTCGGCCGCACG
TCCTCTTGGCCGCCACGGGAAGCGTCGCGACGATCAAGGTGCCTGAAATC
GCGGTGCGCCTAACTAAGGACATCTCAGCAAAAGTTAAGGTGGTCCTAAC
GACGTCAGCGCAGCATTTTTGGGATCGTGCAAAGAAGTACAACCCGGCAG
CATGGACAGAATTTGAGGCGTTGCAGGATGAAATCATGGTGTTGGAGGAC
AAGGACGAGTGGGAGGAGTGGGACGCCATGGGCGACGGAGTCTTGCACAT
TCAAGTTCGGGACTGGGCGGACTTGATGCTTATTGCCCCTTTATCGGCCA
ACACGTTGGGTAAGCTCGCAAACGGGCTCTGCGACAATCTGTTGACTAGC
GTGGTGCGTGCTTGGGACGTAAGGAGACCAGTGGTGGTGGCCCCTGCCAT
GAATACGCACATGTGGACGCACCCCTTTACGGCGCGGCAACTAGGCATGC
TGCAAGCTGACCTTGGATATCATGTCGTTCCACCTGTGTCAAAGCTACTG
GCGTGTGGAGACGCGGGTCAAGGTGGCTTGGCCACAGTGGAAGATCTGGT
GGCGGCGGTAAAGAAATATTTGGGTAGATATTAGTGTAAAGACAACCCGA
TGATGTGAAGCA
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protein sequence of jgi.p|Nanoce1779_2|597530

>mRNA_6628-protein ID=mRNA_6628-protein|Name=jgi.p|Nanoce1779_2|597530|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MESIAPQSPGQRRRPRNFFPPDIPGQRRPHVLLAATGSVATIKVPEIAVR
LTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEALQDEIMVLEDKDE
WEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVR
AWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACG
DAGQGGLATVEDLVAAVKKYLGRY*
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mRNA from alignment at scaffold_18:313098..313809-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6628 ID=mRNA_6628|Name=jgi.p|Nanoce1779_2|597530|organism=Nannochloropsis oceanica|type=mRNA|length=712bp|location=Sequence derived from alignment at scaffold_18:313098..313809- (Nannochloropsis oceanica)
ACAGGCAGCATGGAATCGATAGCGCCCCAAAGTCCTGGTCAACGTCGTCG
GCCTCGAAATTTCTTCCCACCGGACATTCCCGGGCAGCGTCGGCCGCACG
TCCTCTTGGCCGCCACGGGAAGCGTCGCGACGATCAAGGTGCCTGAAATC
GCGGTGCGCCTAACTAAGGACATCTCAGCAAAAGTTAAGGTGGTCCTAAC
GACGTCAGCGCAGCATTTTTGGGATCGTGCAAAGAAGTACAACCCGGCAG
CATGGACAGAATTTGAGGCGTTGCAGGATGAAATCATGGTGTTGGAGGAC
AAGGACGAGTGGGAGGAGTGGGACGCCATGGGCGACGGAGTCTTGCACAT
TCAAGTTCGGGACTGGGCGGACTTGATGCTTATTGCCCCTTTATCGGCCA
ACACGTTGGGTAAGCTCGCAAACGGGCTCTGCGACAATCTGTTGACTAGC
GTGGTGCGTGCTTGGGACGTAAGGAGACCAGTGGTGGTGGCCCCTGCCAT
GAATACGCACATGTGGACGCACCCCTTTACGGCGCGGCAACTAGGCATGC
TGCAAGCTGACCTTGGATATCATGTCGTTCCACCTGTGTCAAAGCTACTG
GCGTGTGGAGACGCGGGTCAAGGTGGCTTGGCCACAGTGGAAGATCTGGT
GGCGGCGGTAAAGAAATATTTGGGTAGATATTAGTGTAAAGACAACCCGA
TGATGTGAAGCA
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Coding sequence (CDS) from alignment at scaffold_18:313098..313809-

>mRNA_6628 ID=mRNA_6628|Name=jgi.p|Nanoce1779_2|597530|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_18:313098..313809- (Nannochloropsis oceanica)
ATGGAATCGATAGCGCCCCAAAGTCCTGGTCAACGTCGTCGGCCTCGAAA
TTTCTTCCCACCGGACATTCCCGGGCAGCGTCGGCCGCACGTCCTCTTGG
CCGCCACGGGAAGCGTCGCGACGATCAAGGTGCCTGAAATCGCGGTGCGC
CTAACTAAGGACATCTCAGCAAAAGTTAAGGTGGTCCTAACGACGTCAGC
GCAGCATTTTTGGGATCGTGCAAAGAAGTACAACCCGGCAGCATGGACAG
AATTTGAGGCGTTGCAGGATGAAATCATGGTGTTGGAGGACAAGGACGAG
TGGGAGGAGTGGGACGCCATGGGCGACGGAGTCTTGCACATTCAAGTTCG
GGACTGGGCGGACTTGATGCTTATTGCCCCTTTATCGGCCAACACGTTGG
GTAAGCTCGCAAACGGGCTCTGCGACAATCTGTTGACTAGCGTGGTGCGT
GCTTGGGACGTAAGGAGACCAGTGGTGGTGGCCCCTGCCATGAATACGCA
CATGTGGACGCACCCCTTTACGGCGCGGCAACTAGGCATGCTGCAAGCTG
ACCTTGGATATCATGTCGTTCCACCTGTGTCAAAGCTACTGGCGTGTGGA
GACGCGGGTCAAGGTGGCTTGGCCACAGTGGAAGATCTGGTGGCGGCGGT
AAAGAAATATTTGGGTAGATATTAG
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Synonyms
Publications