jgi.p|Nanoce1779_2|597528, mRNA_6627 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597528
Unique NamemRNA_6627
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1066
Alignment locationscaffold_18:311910..313097 +

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Properties
Property NameValue
TranscriptId597614
TrackFilteredModels2
ProteinId597528
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:311910..313097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597528gene_6627Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597528mRNA_6627-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6627CDS_6627Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6627 ID=mRNA_6627|Name=jgi.p|Nanoce1779_2|597528|organism=Nannochloropsis oceanica|type=mRNA|length=1066bp
AGGCACACAAGTATGTCTCGCCTGCTCATCCTCGCGGGCCTGCTTTCCTT
GCTGATACCTGTGGGCGTTCTGGGCTTCTTTTGCCCGGCTTCCACTCAGC
AAACCTATGCTCGCCAACGCAGCCCAAGCACACTTACCATGGCGGCCGCG
CTGAAGACTGGGGACCGCGTCGTTGTCATTGGTTCGACGGGTGGGTGCGG
CCAGCTGATTGCCGCCCGGCTAGCCAATGCTGGCAAGTACAAGGTCCGGG
CGATTGGGCGGAGCCAGACCAAGCTGCAGGACGTGCTGGGTAGTAATAGC
GGCATCGACTTGGACGTTGCTGACTCTACCAACCTGGACTCCTTGCTCGC
GCCCTTGAGTGATGCTGATTGCGTCATTATTGCCACGGGCACCAGCGCAT
TCCCCTCTCCACGCTGGAAGAATGGTAACACCCCCGATGCCGTGGACCGC
AAGGGCGTACAAAACATTTTGCAGGCCCTGACAAGTAAACCACGAAAGCG
TCCCGTCAAAAAAGTGATTTTCCTGAGCTCAATCGGCGTGCTCCGCGCCA
AGTCTCTGCCTTACTCGATTTTAAATTTGTTTGGGGTTCTGGATGCTAAG
AGGGATAGCGAGGAGTTTTTGAAATCAATGGCAACCACGGAGGACTTTGA
TTACGTAATTGTGCGACCCGGGCGATTGGTTGGCGGGCCTTGGACAAATA
CCGACGTCAGCGCCCTCCTGAAAGTCGAGGAAGGGACAAGGAAACGAGTG
GTGGTCGAGAAGGGCGATGCGTTAGTAGGTGATGCCGCGCGAATTTCAGT
CGCTGAATTGGTGGCTCGGGCGCTGGATAGACCGGAGGCAGTGGGAAAGG
AGTTGTGCTTGGTGAACGAGGAGGGGAGTCCGTTTTCGGAGGGGGATTGG
GAGAGGCTGTTTGAGGGGTTAAAGGGGTAAAGTGGTAAAGTGAGAGAGAG
AGAGTAGGGCGATTGGGGTGAGTGTGCGGGACGGTGTAATGATAGATTGT
TGGGAATTCGTGCAAGAAAAAGCAAAAATGAGACGCGGAGTCGTACACAC
GTTGTAGATTTACATC
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protein sequence of jgi.p|Nanoce1779_2|597528

>mRNA_6627-protein ID=mRNA_6627-protein|Name=jgi.p|Nanoce1779_2|597528|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MSRLLILAGLLSLLIPVGVLGFFCPASTQQTYARQRSPSTLTMAAALKTG
DRVVVIGSTGGCGQLIAARLANAGKYKVRAIGRSQTKLQDVLGSNSGIDL
DVADSTNLDSLLAPLSDADCVIIATGTSAFPSPRWKNGNTPDAVDRKGVQ
NILQALTSKPRKRPVKKVIFLSSIGVLRAKSLPYSILNLFGVLDAKRDSE
EFLKSMATTEDFDYVIVRPGRLVGGPWTNTDVSALLKVEEGTRKRVVVEK
GDALVGDAARISVAELVARALDRPEAVGKELCLVNEEGSPFSEGDWERLF
EGLKG*
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mRNA from alignment at scaffold_18:311910..313097+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6627 ID=mRNA_6627|Name=jgi.p|Nanoce1779_2|597528|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp|location=Sequence derived from alignment at scaffold_18:311910..313097+ (Nannochloropsis oceanica)
AGGCACACAAGTATGTCTCGCCTGCTCATCCTCGCGGGCCTGCTTTCCTT
GCTGATACCTGTGGGCGTTCTGGGCTTCTTTTGCCCGGCTTCCACTCAGC
AAACCTATGCTCGCCAACGCAGCCCAAGCACACTTACCATGGCGGCCGCG
CTGAAGACTGGGGACCGCGTCGTTGTCATTGGTTCGACGGGTGGGTGCGG
CCAGCTGATTGCCGCCCGGCTAGCCAATGCTGGCAAGTACAAGGTCCGGG
CGATTGGGCGGAGCCAGACCAAGCTGCAGGACGTGCTGGGTAGTAATAGC
GGCATCGACTTGGACGTTGCTGACTCTACCAACCTGGACTCCTTGCTCGC
GCCCTTGAGTGATGCTGATTGCGTCATTATTGCCACGGGCACCAGCGCAT
TCCCCTCTCCACGCTGGAAGAATGGTAACACCCCCGATGCCGTGGACCGC
AAGGGCGTACAAAACATTTTGCAGGCCCTGACAAGTAAACCACGAAAGCG
TCCCGTCAAAAAAGTGATTTTCCTGAGCTCAATCGGCGTGCTCCGCGCCA
AGTCTCTGCCTTACTCGATTTTAAATTTGTTTGGGGTTCTGGATGCTAAG
AGGGATAGCGAGGAGTTTTTGAAATCAATGGCAACCACGGAGGACTTTGA
TTACGTAATTGTAAGTCCGAGGGGGAGGAGAGAGGGATGGAGGGGTAGAC
AAGTAGATGCACGAACATTCCGCTATTTGGATCGAATCATGACTTATTTT
ATTCCTCCACCTCTTCCCCTTGCTAAATGCAGGTGCGACCCGGGCGATTG
GTTGGCGGGCCTTGGACAAATACCGACGTCAGCGCCCTCCTGAAAGTCGA
GGAAGGGACAAGGAAACGAGTGGTGGTCGAGAAGGGCGATGCGTTAGTAG
GTGATGCCGCGCGAATTTCAGTCGCTGAATTGGTGGCTCGGGCGCTGGAT
AGACCGGAGGCAGTGGGAAAGGAGTTGTGCTTGGTGAACGAGGAGGGGAG
TCCGTTTTCGGAGGGGGATTGGGAGAGGCTGTTTGAGGGGTTAAAGGGGT
AAAGTGGTAAAGTGAGAGAGAGAGAGTAGGGCGATTGGGGTGAGTGTGCG
GGACGGTGTAATGATAGATTGTTGGGAATTCGTGCAAGAAAAAGCAAAAA
TGAGACGCGGAGTCGTACACACGTTGTAGATTTACATC
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Coding sequence (CDS) from alignment at scaffold_18:311910..313097+

>mRNA_6627 ID=mRNA_6627|Name=jgi.p|Nanoce1779_2|597528|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_18:311910..313097+ (Nannochloropsis oceanica)
ATGTCTCGCCTGCTCATCCTCGCGGGCCTGCTTTCCTTGCTGATACCTGT
GGGCGTTCTGGGCTTCTTTTGCCCGGCTTCCACTCAGCAAACCTATGCTC
GCCAACGCAGCCCAAGCACACTTACCATGGCGGCCGCGCTGAAGACTGGG
GACCGCGTCGTTGTCATTGGTTCGACGGGTGGGTGCGGCCAGCTGATTGC
CGCCCGGCTAGCCAATGCTGGCAAGTACAAGGTCCGGGCGATTGGGCGGA
GCCAGACCAAGCTGCAGGACGTGCTGGGTAGTAATAGCGGCATCGACTTG
GACGTTGCTGACTCTACCAACCTGGACTCCTTGCTCGCGCCCTTGAGTGA
TGCTGATTGCGTCATTATTGCCACGGGCACCAGCGCATTCCCCTCTCCAC
GCTGGAAGAATGGTAACACCCCCGATGCCGTGGACCGCAAGGGCGTACAA
AACATTTTGCAGGCCCTGACAAGTAAACCACGAAAGCGTCCCGTCAAAAA
AGTGATTTTCCTGAGCTCAATCGGCGTGCTCCGCGCCAAGTCTCTGCCTT
ACTCGATTTTAAATTTGTTTGGGGTTCTGGATGCTAAGAGGGATAGCGAG
GAGTTTTTGAAATCAATGGCAACCACGGAGGACTTTGATTACGTAATTGT
GCGACCCGGGCGATTGGTTGGCGGGCCTTGGACAAATACCGACGTCAGCG
CCCTCCTGAAAGTCGAGGAAGGGACAAGGAAACGAGTGGTGGTCGAGAAG
GGCGATGCGTTAGTAGGTGATGCCGCGCGAATTTCAGTCGCTGAATTGGT
GGCTCGGGCGCTGGATAGACCGGAGGCAGTGGGAAAGGAGTTGTGCTTGG
TGAACGAGGAGGGGAGTCCGTTTTCGGAGGGGGATTGGGAGAGGCTGTTT
GAGGGGTTAAAGGGGTAAATGTCTCGCCTGCTCATCCTCGCGGGCCTGCT
TTCCTTGCTGATACCTGTGGGCGTTCTGGGCTTCTTTTGCCCGGCTTCCA
CTCAGCAAACCTATGCTCGCCAACGCAGCCCAAGCACACTTACCATGGCG
GCCGCGCTGAAGACTGGGGACCGCGTCGTTGTCATTGGTTCGACGGGTGG
GTGCGGCCAGCTGATTGCCGCCCGGCTAGCCAATGCTGGCAAGTACAAGG
TCCGGGCGATTGGGCGGAGCCAGACCAAGCTGCAGGACGTGCTGGGTAGT
AATAGCGGCATCGACTTGGACGTTGCTGACTCTACCAACCTGGACTCCTT
GCTCGCGCCCTTGAGTGATGCTGATTGCGTCATTATTGCCACGGGCACCA
GCGCATTCCCCTCTCCACGCTGGAAGAATGGTAACACCCCCGATGCCGTG
GACCGCAAGGGCGTACAAAACATTTTGCAGGCCCTGACAAGTAAACCACG
AAAGCGTCCCGTCAAAAAAGTGATTTTCCTGAGCTCAATCGGCGTGCTCC
GCGCCAAGTCTCTGCCTTACTCGATTTTAAATTTGTTTGGGGTTCTGGAT
GCTAAGAGGGATAGCGAGGAGTTTTTGAAATCAATGGCAACCACGGAGGA
CTTTGATTACGTAATTGTGCGACCCGGGCGATTGGTTGGCGGGCCTTGGA
CAAATACCGACGTCAGCGCCCTCCTGAAAGTCGAGGAAGGGACAAGGAAA
CGAGTGGTGGTCGAGAAGGGCGATGCGTTAGTAGGTGATGCCGCGCGAAT
TTCAGTCGCTGAATTGGTGGCTCGGGCGCTGGATAGACCGGAGGCAGTGG
GAAAGGAGTTGTGCTTGGTGAACGAGGAGGGGAGTCCGTTTTCGGAGGGG
GATTGGGAGAGGCTGTTTGAGGGGTTAAAGGGGTAA
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Synonyms
Publications