jgi.p|Nanoce1779_2|597518, mRNA_6624 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597518
Unique NamemRNA_6624
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1234
Alignment locationscaffold_18:306754..307987 +

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Properties
Property NameValue
TranscriptId597604
TrackFilteredModels2
ProteinId597518
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:306754..307987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597518gene_6624Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597518mRNA_6624-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6624CDS_6624Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6624 ID=mRNA_6624|Name=jgi.p|Nanoce1779_2|597518|organism=Nannochloropsis oceanica|type=mRNA|length=1234bp
GGAAGGGAGGGAGGGAGGAAAGGGAAATTTGTGTTGGATTTGAATTTGTT
AAGTGGGTTGAATCTGAGTCCGTTGCACTATGCGGCCGTTAGCGCGGGGA
TGGAAACGGTGGATTTACTGATACGTCATGGGGCGAGTGTGCTTGTGCGG
GTAGGAGGAGGTTGCAGGTTAGGAGGGGAGGGGAGGGGGCTTGGAGGAGG
AGGAGAGACGCCCTTGGAGATGGTGCAGAGTTGCTTGGACGGGGATGCGA
TTGAGGAGGATGAGGAGGAGGAGATTATTGTGTGTTCTGGGGCGGAAGGG
AGGGAAGGAGAGGCGAGGTATGGGCTCGAGAGTCGACGGGCTCGATTGCA
ACAGGTGGCGGCTTACTTAACTGCCGCAGCTGCTGCACGACATTTGACGC
TGTGGCAGAAAAAGGAGGAGGCGAGGGAAAGACGGGAGGAAAGGAAGAGG
GAGGCGGAGGAGGCGGCCTTAAGGAGGGATGGGGAGCAGAAATGGATGCA
GGCTGCAGAGAGGAAAGCGGCGGAACTTACGTTGGACAGGAAGGTGCATC
AGGAGACAGAGGTGAAGAAAAATAAGAATAAGAATAAGTTTCAAAAGCAA
GGAGGTGGGAGTAGTAATGAAGGCACAGGAGCGTCCGTATTACCGGCTGC
AGTAACGTCAGCATCAGCGGCTGGACCACAGTCCTCATCCTCTTGCTCCT
CCTTGGTGCTGGCTGTGCCACGTCCTGCTTCCAGCTCCCAGCAATCAGTT
CCCTGCCCTGTCGTCTCTTCTTCCTCCACCACCACCACCTTTCCCCCCCT
TCCCTCCACATCCGAGTTAGTCACAAACATCCTCTTCCCTAATGTTGCAG
CGCCCACCACTATTACCACCCCCCCCTTAGCAGCACCGTCCACCTCCGCA
AACAGCGCCATCCCGCCATCCTCAAATCCCCTTCCCCCTCTTTCCGCCCC
TGTCCAGGCCCTGTTCAAACAGGCGAGGGTCGAAGAAAAAAAACGGAAGA
AATTTGAAAAATTCTGTGAAAAAATTGCGCTCAAAGAAACCTTGGCGATG
ATGGCGGAAGATGAGGCCATGCGGATCTTGATCAGAAAAGAAGCTGAGAT
TAAGCTGAAAGCGGCGAGGGAGTTGTTGGCTTTGGCTGAGGAGGAGGTGA
AATTGTGTGCACGAAGAGAGGCTGGGAGGCCTGTTGGGGATGTGGTGGAG
GGGGGGGGGGGAGAAGGCGGGGACAAAGAGCAGG
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protein sequence of jgi.p|Nanoce1779_2|597518

>mRNA_6624-protein ID=mRNA_6624-protein|Name=jgi.p|Nanoce1779_2|597518|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
METVDLLIRHGASVLVRVGGGCRLGGEGRGLGGGGETPLEMVQSCLDGDA
IEEDEEEEIIVCSGAEGREGEARYGLESRRARLQQVAAYLTAAAAARHLT
LWQKKEEARERREERKREAEEAALRRDGEQKWMQAAERKAAELTLDRKVH
QETEVKKNKNKNKFQKQGGGSSNEGTGASVLPAAVTSASAAGPQSSSSCS
SLVLAVPRPASSSQQSVPCPVVSSSSTTTTFPPLPSTSELVTNILFPNVA
APTTITTPPLAAPSTSANSAIPPSSNPLPPLSAPVQALFKQARVEEKKRK
KF
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mRNA from alignment at scaffold_18:306754..307987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6624 ID=mRNA_6624|Name=jgi.p|Nanoce1779_2|597518|organism=Nannochloropsis oceanica|type=mRNA|length=1234bp|location=Sequence derived from alignment at scaffold_18:306754..307987+ (Nannochloropsis oceanica)
GGAAGGGAGGGAGGGAGGAAAGGGAAATTTGTGTTGGATTTGAATTTGTT
AAGTGGGTTGAATCTGAGTCCGTTGCACTATGCGGCCGTTAGCGCGGGGA
TGGAAACGGTGGATTTACTGATACGTCATGGGGCGAGTGTGCTTGTGCGG
GTAGGAGGAGGTTGCAGGTTAGGAGGGGAGGGGAGGGGGCTTGGAGGAGG
AGGAGAGACGCCCTTGGAGATGGTGCAGAGTTGCTTGGACGGGGATGCGA
TTGAGGAGGATGAGGAGGAGGAGATTATTGTGTGTTCTGGGGCGGAAGGG
AGGGAAGGAGAGGCGAGGTATGGGCTCGAGAGTCGACGGGCTCGATTGCA
ACAGGTGGCGGCTTACTTAACTGCCGCAGCTGCTGCACGACATTTGACGC
TGTGGCAGAAAAAGGAGGAGGCGAGGGAAAGACGGGAGGAAAGGAAGAGG
GAGGCGGAGGAGGCGGCCTTAAGGAGGGATGGGGAGCAGAAATGGATGCA
GGCTGCAGAGAGGAAAGCGGCGGAACTTACGTTGGACAGGAAGGTGCATC
AGGAGACAGAGGTGAAGAAAAATAAGAATAAGAATAAGTTTCAAAAGCAA
GGAGGTGGGAGTAGTAATGAAGGCACAGGAGCGTCCGTATTACCGGCTGC
AGTAACGTCAGCATCAGCGGCTGGACCACAGTCCTCATCCTCTTGCTCCT
CCTTGGTGCTGGCTGTGCCACGTCCTGCTTCCAGCTCCCAGCAATCAGTT
CCCTGCCCTGTCGTCTCTTCTTCCTCCACCACCACCACCTTTCCCCCCCT
TCCCTCCACATCCGAGTTAGTCACAAACATCCTCTTCCCTAATGTTGCAG
CGCCCACCACTATTACCACCCCCCCCTTAGCAGCACCGTCCACCTCCGCA
AACAGCGCCATCCCGCCATCCTCAAATCCCCTTCCCCCTCTTTCCGCCCC
TGTCCAGGCCCTGTTCAAACAGGCGAGGGTCGAAGAAAAAAAACGGAAGA
AATTTGAAAAATTCTGTGAAAAAATTGCGCTCAAAGAAACCTTGGCGATG
ATGGCGGAAGATGAGGCCATGCGGATCTTGATCAGAAAAGAAGCTGAGAT
TAAGCTGAAAGCGGCGAGGGAGTTGTTGGCTTTGGCTGAGGAGGAGGTGA
AATTGTGTGCACGAAGAGAGGCTGGGAGGCCTGTTGGGGATGTGGTGGAG
GGGGGGGGGGGAGAAGGCGGGGACAAAGAGCAGG
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Coding sequence (CDS) from alignment at scaffold_18:306754..307987+

>mRNA_6624 ID=mRNA_6624|Name=jgi.p|Nanoce1779_2|597518|organism=Nannochloropsis oceanica|type=CDS|length=908bp|location=Sequence derived from alignment at scaffold_18:306754..307987+ (Nannochloropsis oceanica)
ATGGAAACGGTGGATTTACTGATACGTCATGGGGCGAGTGTGCTTGTGCG
GGTAGGAGGAGGTTGCAGGTTAGGAGGGGAGGGGAGGGGGCTTGGAGGAG
GAGGAGAGACGCCCTTGGAGATGGTGCAGAGTTGCTTGGACGGGGATGCG
ATTGAGGAGGATGAGGAGGAGGAGATTATTGTGTGTTCTGGGGCGGAAGG
GAGGGAAGGAGAGGCGAGGTATGGGCTCGAGAGTCGACGGGCTCGATTGC
AACAGGTGGCGGCTTACTTAACTGCCGCAGCTGCTGCACGACATTTGACG
CTGTGGCAGAAAAAGGAGGAGGCGAGGGAAAGACGGGAGGAAAGGAAGAG
GGAGGCGGAGGAGGCGGCCTTAAGGAGGGATGGGGAGCAGAAATGGATGC
AGGCTGCAGAGAGGAAAGCGGCGGAACTTACGTTGGACAGGAAGGTGCAT
CAGGAGACAGAGGTGAAGAAAAATAAGAATAAGAATAAGTTTCAAAAGCA
AGGAGGTGGGAGTAGTAATGAAGGCACAGGAGCGTCCGTATTACCGGCTG
CAGTAACGTCAGCATCAGCGGCTGGACCACAGTCCTCATCCTCTTGCTCC
TCCTTGGTGCTGGCTGTGCCACGTCCTGCTTCCAGCTCCCAGCAATCAGT
TCCCTGCCCTGTCGTCTCTTCTTCCTCCACCACCACCACCTTTCCCCCCC
TTCCCTCCACATCCGAGTTAGTCACAAACATCCTCTTCCCTAATGTTGCA
GCGCCCACCACTATTACCACCCCCCCCTTAGCAGCACCGTCCACCTCCGC
AAACAGCGCCATCCCGCCATCCTCAAATCCCCTTCCCCCTCTTTCCGCCC
CTGTCCAGGCCCTGTTCAAACAGGCGAGGGTCGAAGAAAAAAAACGGAAG
AAATTTGA
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Synonyms
Publications