jgi.p|Nanoce1779_2|558192, mRNA_6622 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|558192
Unique Name	mRNA_6622
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1583
Alignment location	scaffold_18:298992..301444 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	558278
Track	FilteredModels2
ProteinId	558192

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:298992..301444 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558192	gene_6622	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558192	mRNA_6622-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6622	CDS_6622	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:298992..301444+
coding sequence from alignment at scaffold_18:298992..301444+

mRNA sequence

>mRNA_6622 ID=mRNA_6622|Name=jgi.p|Nanoce1779_2|558192|organism=Nannochloropsis oceanica|type=mRNA|length=1583bp
ACAGGGATCGACCAGCGGTAATGCGGTGGGTCAAGCCAGAAGCGGGCGCT
CGGGATAGCCTATCCCTCCTCCTATCCCTCCTGAGCATCACCATCACTTT
GACAACCCTGCCAATGTCCACCGTGGCCTTGTCCAATGGCATGGGGCTCA
CACCCGCCATGGGCTTCAATACATGGAATAAATTCGGGTGCAATATCGAC
GAGGCTCTGCTGAAAGAGACGGCGCAACTCCTGATTGACACGGGGCTAAA
GGACAAGGGCTATTCGTATGTCAATTTGGATGACTGCTGGATGGAGAGAA
ATCGCACCGCCGACGGGCGCCTGGTGGAGGATCCGATCAAGTTTCCCTCG
GGGCTCAAGGCCTTGGGCGAGTATTTGCATGGATTGGGGTTTAAATTTGG
GATCTATTCTAGCGCGGGGTATGCGACGTGCGAGAAGTACCCAGCATCGT
TGGGGATGGAGGAGTTAGACGCGCAGACATGGGCCAATTGGGGGGTAGAT
TATTTAAAATACGACAATTGTTATACAGATGGGACGCCACCTGAAATGCG
GTACCCACCAATGAGGGATGCCCTGAACGGAACGGGCCGGCCGATGTTGT
ATTCGATATGTGAGTGGGGGTTGAACAACCCTGGGGGATGGGCGAGGGAA
GTGGGGAACAGCTGGAGGACGACGCCTGATATAAGGGATGAGTGGACATC
GGTGATGGAGATTGTGGAGGTAAATGGACGGAGATGGAGGTATGGCAGGA
GGGGGGGTTGGAATGATCCAGATATGCTGGAGGTGGGAAATGGCGGGATG
AGCGGGGAGGAATATAGGAGCCACATGTCTTTGTGGTGTGTGATGAAGGC
GCCTTTGCTAATTGGATGTGACTTGAAGGGGTTGGAGATAGGAGGGGAGA
TTCTGAATTTGTTGGGAAATGAGGAGGTGTTAAGCGTGAACCAGGACGCG
TTGGGGAGGCAGGCACGGAGGCAATGCCTAGCTCCCGAGACCGATGCTCC
TCCTGGTGCCCAGGAAATCTGGATGGGTCCCCTTTCCGATAATGCTGTTG
TCGTTCTCCTCTTCAATCGCAGCCCTGTCGCCAATAGAATTTCTGCCAGA
TGGAGTGATCTCGGGTTAGTCAAAGGGGGAAGGGAGGGAGGGGGGGGAGA
GGATGAGAAGGAGAAGGTGATTTATGATGTGAGGGATTTGTGGGCGCGGA
AGACCTTATCGACGGAGGCTGTGAGGGAGGGAATCATGGAGTGGGAGGTG
CCAGGCCATGGGGTGGCTTTGTTTAAGCTGACACCGGTGGTGGTATAGAG
ATAAAATCCGAGGTGGTGGAGAAGGATAAGAAGAGCAGCGTCTGTGGGAT
TTGACAAGGGGCATTCGTGCAGGTGAAAGAGGGAAGAAAAGAAAGGGAGA
GGCTTGAAAAGTTTTATGAAAACAAAGGTATGAAAATTGTATTTCTGGAG
ATAGTTATTGACAGATGCGTCGAAATAGAAGTAAAACATAGAGAAGGGAT
AATCTGATGTATATTATGAAGTTGTGTTAGGAAGGAAAGGTTCATCGAAC
AAAAATAGAATGAAGGAATCGTATGTCAAGCAT

protein sequence of jgi.p|Nanoce1779_2|558192

>mRNA_6622-protein ID=mRNA_6622-protein|Name=jgi.p|Nanoce1779_2|558192|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MRWVKPEAGARDSLSLLLSLLSITITLTTLPMSTVALSNGMGLTPAMGFN
TWNKFGCNIDEALLKETAQLLIDTGLKDKGYSYVNLDDCWMERNRTADGR
LVEDPIKFPSGLKALGEYLHGLGFKFGIYSSAGYATCEKYPASLGMEELD
AQTWANWGVDYLKYDNCYTDGTPPEMRYPPMRDALNGTGRPMLYSICEWG
LNNPGGWAREVGNSWRTTPDIRDEWTSVMEIVEVNGRRWRYGRRGGWNDP
DMLEVGNGGMSGEEYRSHMSLWCVMKAPLLIGCDLKGLEIGGEILNLLGN
EEVLSVNQDALGRQARRQCLAPETDAPPGAQEIWMGPLSDNAVVVLLFNR
SPVANRISARWSDLGLVKGGREGGGGEDEKEKVIYDVRDLWARKTLSTEA
VREGIMEWEVPGHGVALFKLTPVVV*

mRNA from alignment at scaffold_18:298992..301444+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6622 ID=mRNA_6622|Name=jgi.p|Nanoce1779_2|558192|organism=Nannochloropsis oceanica|type=mRNA|length=2453bp|location=Sequence derived from alignment at scaffold_18:298992..301444+ (Nannochloropsis oceanica)
ACAGGGATCGACCAGCGGTAATGCGGTGGGTCAAGCCAGAAGCGGGCGCT
CGGGATAGCCTATCCCTCCTCCTATCCCTCCTGAGCATCACCATCACTTT
GACAACCCTGCCAATGTCCACCGTGGCCTTGTCCAATGGCATGGGGCTCA
CACCCGCCATGGGCTTCAATACATGGAATAAATTCGGGTGCAATATCGAC
GAGGCTCTGCTGAAAGAGACGGCGCAACTCCTGATTGACACGGGGCTAAA
GGACAAGGGCTATTCGTATGTCAATTTGGATGACTGCTGGATGGAGAGAA
ATCGCACCGCCGACGGGCGCCTGGTGGAGGATCCGATCAAGTTTCCCTCG
GGGCTCAAGGCCTTGGGCGAGTATTTGCATGGATTGGGGTTTAAATTTGG
GATCTATTCTAGCGCGGGGTATGCGACGTGCGAGAAGTACCCAGCATCGT
TGGGGATGGAGGAGTTAGACGCGCAGACATGGGCCAATTGGGGGGTAGAT
TATTTAAAATACGACAATTGTTATACAGATGGGACGCCACCTGAAATGCG
GTACCCACCAATGAGGGATGCCCTGAACGGAACGGGCCGGCCGATGTTGT
ATTCGATATGTGAGTGGGGGTTGAACAACCCTGGGGGATGGGCGAGGGAA
GTGGGGAACAGCTGGAGGACGACGCCTGATATAAGGGATGAGTGGACATC
GGTGATGGAGATTGTGGAGGTAAATGGACGGAGATGGAGGTATGGCAGGA
GGGGGGGTTGGAATGATCCAGATATGCTGGAGGTGGGAAATGGCGGGATG
AGCGGGGAGGAATATAGGAGCCACATGTCTTTGTGGTGTGTGATGAAGGC
GCCTTTGCTAATTGGATGTGACTTGAAGGGGTTGGAGATAGGAGGGGAGA
TTCTGAATTTGTTGGGAAATGAGGAGGTGTTAAGCGTGAACCAGGACGCG
TTGGGGAGGCAGGCACGGAGGGTGTGGTCTTCTGCACTAGAGGGAGGGAG
AGGAGGGATGGAAGGGATGGGGGTTAAAAGTGCTATCATGGTGCCGTGTG
AAAGAACGGAGGAGGGGGAGGGAGACGATGTGGATGCTGTATTTTGGGCA
GTAGAGCCGGCGGCGGAGGAGGTGGTGAAGATGAAGGTGGATAAAGGAGG
AGTGCCGACTGCTACTGCTGCTCTTGACACTCGCGCGAGGGAAGCAGAAG
TAGTGACTCTCCGGTTGTTGGCGAAAGATGGAGGAGACGCAGATCTTAGT
CTATGCCTTGCTGTGGCTGATCAGGGATTGGATGAGAAGCAGGGCTTGGA
AATGGGGGAGGAGGAGGAGGAGGAGGAGGGGGATGTGGCGGCCATCAGTC
GCTCCATGCTTCTTCGAGGCTCTGCAGGTGGAGAAGAAGATAAAGCCACA
ACCGCCAAAAAAGCAGAAGTAGTATCATTTCCCGATACGGGCATGGGAGT
GGCGCTGGAGCCCTGCGTTTGCTTCCCCTCTTCCGTTTCCTCCTCATCGG
CGGCGGCAACGCGTCAGCAGTGGCTGCGGGATGGATCGATGCTCATGCCT
GTCACAGCCCCCCATTTGTGTTTGTCTGTGGTGAGGAGCACTTTGAATAT
TTTGAACACAGGAATAGCGATCGAGTTGGTGGCATGTAATGAAACACGTG
AGGTGCAACAGTGGACGATTAAGGAGAAAACGACAACGGTGGTCAACGAG
CGAGGGAAGGATATAGGAAAATGGGGGGATCAGGCGGGTGGGCTCATGAC
AGAGAATATGGGGGAAATCAGTCCAGATTTTTCTCAGTCTTCTTCTTCCT
CCTCCGCATTACCGCAATTGCTTATCAACAATTGGCAACAGCAATGCCTA
GCTCCCGAGACCGATGCTCCTCCTGGTGCCCAGGAAATCTGGATGGGTCC
CCTTTCCGATAATGCTGTTGTCGTTCTCCTCTTCAATCGCAGCCCTGTCG
CCAATAGAATTTCTGCCAGATGGAGTGATCTCGGGTTAGTCAAAGGGGGA
AGGGAGGGAGGGGGGGGAGAGGATGAGAAGGAGAAGGTGATTTATGATGT
GAGGGATTTGTGGGCGCGGAAGACCTTATCGACGGAGGCTGTGAGGGAGG
GAATCATGGAGTGGGAGGTGCCAGGCCATGGGGTGGCTTTGTTTAAGCTG
ACACCGGTGGTGGTATAGAGATAAAATCCGAGGTGGTGGAGAAGGATAAG
AAGAGCAGCGTCTGTGGGATTTGACAAGGGGCATTCGTGCAGGTGAAAGA
GGGAAGAAAAGAAAGGGAGAGGCTTGAAAAGTTTTATGAAAACAAAGGTA
TGAAAATTGTATTTCTGGAGATAGTTATTGACAGATGCGTCGAAATAGAA
GTAAAACATAGAGAAGGGATAATCTGATGTATATTATGAAGTTGTGTTAG
GAAGGAAAGGTTCATCGAACAAAAATAGAATGAAGGAATCGTATGTCAAG
CAT

Coding sequence (CDS) from alignment at scaffold_18:298992..301444+

>mRNA_6622 ID=mRNA_6622|Name=jgi.p|Nanoce1779_2|558192|organism=Nannochloropsis oceanica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_18:298992..301444+ (Nannochloropsis oceanica)
ATGCGGTGGGTCAAGCCAGAAGCGGGCGCTCGGGATAGCCTATCCCTCCT
CCTATCCCTCCTGAGCATCACCATCACTTTGACAACCCTGCCAATGTCCA
CCGTGGCCTTGTCCAATGGCATGGGGCTCACACCCGCCATGGGCTTCAAT
ACATGGAATAAATTCGGGTGCAATATCGACGAGGCTCTGCTGAAAGAGAC
GGCGCAACTCCTGATTGACACGGGGCTAAAGGACAAGGGCTATTCGTATG
TCAATTTGGATGACTGCTGGATGGAGAGAAATCGCACCGCCGACGGGCGC
CTGGTGGAGGATCCGATCAAGTTTCCCTCGGGGCTCAAGGCCTTGGGCGA
GTATTTGCATGGATTGGGGTTTAAATTTGGGATCTATTCTAGCGCGGGGT
ATGCGACGTGCGAGAAGTACCCAGCATCGTTGGGGATGGAGGAGTTAGAC
GCGCAGACATGGGCCAATTGGGGGGTAGATTATTTAAAATACGACAATTG
TTATACAGATGGGACGCCACCTGAAATGCGGTACCCACCAATGAGGGATG
CCCTGAACGGAACGGGCCGGCCGATGTTGTATTCGATATGTGAGTGGGGG
TTGAACAACCCTGGGGGATGGGCGAGGGAAGTGGGGAACAGCTGGAGGAC
GACGCCTGATATAAGGGATGAGTGGACATCGGTGATGGAGATTGTGGAGG
TAAATGGACGGAGATGGAGGTATGGCAGGAGGGGGGGTTGGAATGATCCA
GATATGCTGGAGGTGGGAAATGGCGGGATGAGCGGGGAGGAATATAGGAG
CCACATGTCTTTGTGGTGTGTGATGAAGGCGCCTTTGCTAATTGGATGTG
ACTTGAAGGGGTTGGAGATAGGAGGGGAGATTCTGAATTTGTTGGGAAAT
GAGGAGGTGTTAAGCGTGAACCAGGACGCGTTGGGGAGGCAGGCACGGAG
GCAATGCCTAGCTCCCGAGACCGATGCTCCTCCTGGTGCCCAGGAAATCT
GGATGGGTCCCCTTTCCGATAATGCTGTTGTCGTTCTCCTCTTCAATCGC
AGCCCTGTCGCCAATAGAATTTCTGCCAGATGGAGTGATCTCGGGTTAGT
CAAAGGGGGAAGGGAGGGAGGGGGGGGAGAGGATGAGAAGGAGAAGGTGA
TTTATGATGTGAGGGATTTGTGGGCGCGGAAGACCTTATCGACGGAGGCT
GTGAGGGAGGGAATCATGGAGTGGGAGGTGCCAGGCCATGGGGTGGCTTT
GTTTAAGCTGACACCGGTGGTGGTATAGATGCGGTGGGTCAAGCCAGAAG
CGGGCGCTCGGGATAGCCTATCCCTCCTCCTATCCCTCCTGAGCATCACC
ATCACTTTGACAACCCTGCCAATGTCCACCGTGGCCTTGTCCAATGGCAT
GGGGCTCACACCCGCCATGGGCTTCAATACATGGAATAAATTCGGGTGCA
ATATCGACGAGGCTCTGCTGAAAGAGACGGCGCAACTCCTGATTGACACG
GGGCTAAAGGACAAGGGCTATTCGTATGTCAATTTGGATGACTGCTGGAT
GGAGAGAAATCGCACCGCCGACGGGCGCCTGGTGGAGGATCCGATCAAGT
TTCCCTCGGGGCTCAAGGCCTTGGGCGAGTATTTGCATGGATTGGGGTTT
AAATTTGGGATCTATTCTAGCGCGGGGTATGCGACGTGCGAGAAGTACCC
AGCATCGTTGGGGATGGAGGAGTTAGACGCGCAGACATGGGCCAATTGGG
GGGTAGATTATTTAAAATACGACAATTGTTATACAGATGGGACGCCACCT
GAAATGCGGTACCCACCAATGAGGGATGCCCTGAACGGAACGGGCCGGCC
GATGTTGTATTCGATATGTGAGTGGGGGTTGAACAACCCTGGGGGATGGG
CGAGGGAAGTGGGGAACAGCTGGAGGACGACGCCTGATATAAGGGATGAG
TGGACATCGGTGATGGAGATTGTGGAGGTAAATGGACGGAGATGGAGGTA
TGGCAGGAGGGGGGGTTGGAATGATCCAGATATGCTGGAGGTGGGAAATG
GCGGGATGAGCGGGGAGGAATATAGGAGCCACATGTCTTTGTGGTGTGTG
ATGAAGGCGCCTTTGCTAATTGGATGTGACTTGAAGGGGTTGGAGATAGG
AGGGGAGATTCTGAATTTGTTGGGAAATGAGGAGGTGTTAAGCGTGAACC
AGGACGCGTTGGGGAGGCAGGCACGGAGGCAATGCCTAGCTCCCGAGACC
GATGCTCCTCCTGGTGCCCAGGAAATCTGGATGGGTCCCCTTTCCGATAA
TGCTGTTGTCGTTCTCCTCTTCAATCGCAGCCCTGTCGCCAATAGAATTT
CTGCCAGATGGAGTGATCTCGGGTTAGTCAAAGGGGGAAGGGAGGGAGGG
GGGGGAGAGGATGAGAAGGAGAAGGTGATTTATGATGTGAGGGATTTGTG
GGCGCGGAAGACCTTATCGACGGAGGCTGTGAGGGAGGGAATCATGGAGT
GGGAGGTGCCAGGCCATGGGGTGGCTTTGTTTAAGCTGACACCGGTGGTG
GTATAG

Synonyms

Publications