jgi.p|Nanoce1779_2|640901, mRNA_6620 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640901
Unique NamemRNA_6620
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1341
Alignment locationscaffold_18:294538..295878 -

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Properties
Property NameValue
TranscriptId640987
TrackFilteredModels2
ProteinId640901
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:294538..295878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640901gene_6620Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6620CDS_6620Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640901mRNA_6620-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6620 ID=mRNA_6620|Name=jgi.p|Nanoce1779_2|640901|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp
ATGCCGGACATTTGTCCGTCGCCCGCGCTTAAGAGCAGCAAAGACGACTC
GGAGATGACACATGAGTCCCGGCTTGCCGACACAGGCAGGAGCAGCATTT
CTACCCTCGACGTGACACCCACAGCATCATCGCATCCCACCTCAACTACA
TCAGCCCTTCCTCCGCTCTTAGACCAGTTAAGTATGCGCCAGCCGCCCCC
ATCGGGCACCTCGACAAATACCAAGATGCCAGTGACAACACGAATTAGGC
CTTTGTCACGAAGCTCCCTTGAAAGCACCATGGACGAACTAAGCGAAGTG
AGTGGAGGCGTCTCAGGCGAAGATACGAGTAAATTATCCGAGCCCGAAAA
CTCGTTACGACGGCCCTTCTGGCAGTTGAATCTCCTTCGAGCCACCATCA
CGACGGGAGGATTTCTCACACCGCGCTTACATGTACCTCGCTTGGTCTGG
GAACAATGGGGCGCCAAGTTGAACGGTTTGACCACCAAAGCCACAGCTTT
TGAGGCTGTCTTAAGTCTACTTGTGGACCGCATTTTGCCCTTGGAGCTCC
TATCGAGCATCAATGACCCCAGCAGGAAAACCCAAAATGAGGATGGCGAG
GCCGCAAGGAGGGACCTAGCTAAGGTACTGCGGATTTTTGAGGAAGTGCG
CGCCGAGTTTGACTTTCTGCAAAACTCTCTCGCGCGGCTCTTTCTCTTTA
TCAAAGAAGTCCCCCCTACCGCCACCAGCAGCAGCACCAGTAACAGCAGC
AGTAACGGCAGCATAGCAATAGCGCTTGCGTCGTCATCCTCCTCCTCCGC
CGCCTCTTCATTTTATTTGGGAAGTGGTGGGGGCATGCAGCAAGTGCGGG
GATTCATGACTTCTTTTCGCAATAAGATTCAAAGAAGCGCAGTCTCTGCG
ATGACTGCGGTTGAACGCATAGGGGTGGCCTTGCCTGCCAAAATAAATGA
TGAAGACCTCTTATCCTACGCTAGCTTGGTCTCTGAGATGTGTCATAAGG
CCCAGAGGCTCGACGAATGGTTTGTTTCCCTGGATTGTCGGAGAAGAGAG
TTACAGGAAGCATTGCGAAGAGAGGCATCTCCGTCAGCTTCATCTACTTC
TTCCTCTTCCGCGTCCTCCTTTTCTTCCTCATCTTTATCAGGGAAAGAAG
CAACCCAAGCGCTGTTGCACCAAGTGGAGGGCATTCTGGTGGAATTGCTG
CATTGTGCCAGATTTCTGCAGGAGGTGGTGATCGAGCTTCTTCTACGAGA
CGTAGAATCGTTGGTGGACTCGTATTTGCGCAAGGCCCGCAAAGTGTTCA
CGAGAATGGTTTGGGAGTTGGAGGAGCAGGAGAATAGCTAG
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protein sequence of jgi.p|Nanoce1779_2|640901

>mRNA_6620-protein ID=mRNA_6620-protein|Name=jgi.p|Nanoce1779_2|640901|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MPDICPSPALKSSKDDSEMTHESRLADTGRSSISTLDVTPTASSHPTSTT
SALPPLLDQLSMRQPPPSGTSTNTKMPVTTRIRPLSRSSLESTMDELSEV
SGGVSGEDTSKLSEPENSLRRPFWQLNLLRATITTGGFLTPRLHVPRLVW
EQWGAKLNGLTTKATAFEAVLSLLVDRILPLELLSSINDPSRKTQNEDGE
AARRDLAKVLRIFEEVRAEFDFLQNSLARLFLFIKEVPPTATSSSTSNSS
SNGSIAIALASSSSSSAASSFYLGSGGGMQQVRGFMTSFRNKIQRSAVSA
MTAVERIGVALPAKINDEDLLSYASLVSEMCHKAQRLDEWFVSLDCRRRE
LQEALRREASPSASSTSSSSASSFSSSSLSGKEATQALLHQVEGILVELL
HCARFLQEVVIELLLRDVESLVDSYLRKARKVFTRMVWELEEQENS*
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mRNA from alignment at scaffold_18:294538..295878-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6620 ID=mRNA_6620|Name=jgi.p|Nanoce1779_2|640901|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at scaffold_18:294538..295878- (Nannochloropsis oceanica)
ATGCCGGACATTTGTCCGTCGCCCGCGCTTAAGAGCAGCAAAGACGACTC
GGAGATGACACATGAGTCCCGGCTTGCCGACACAGGCAGGAGCAGCATTT
CTACCCTCGACGTGACACCCACAGCATCATCGCATCCCACCTCAACTACA
TCAGCCCTTCCTCCGCTCTTAGACCAGTTAAGTATGCGCCAGCCGCCCCC
ATCGGGCACCTCGACAAATACCAAGATGCCAGTGACAACACGAATTAGGC
CTTTGTCACGAAGCTCCCTTGAAAGCACCATGGACGAACTAAGCGAAGTG
AGTGGAGGCGTCTCAGGCGAAGATACGAGTAAATTATCCGAGCCCGAAAA
CTCGTTACGACGGCCCTTCTGGCAGTTGAATCTCCTTCGAGCCACCATCA
CGACGGGAGGATTTCTCACACCGCGCTTACATGTACCTCGCTTGGTCTGG
GAACAATGGGGCGCCAAGTTGAACGGTTTGACCACCAAAGCCACAGCTTT
TGAGGCTGTCTTAAGTCTACTTGTGGACCGCATTTTGCCCTTGGAGCTCC
TATCGAGCATCAATGACCCCAGCAGGAAAACCCAAAATGAGGATGGCGAG
GCCGCAAGGAGGGACCTAGCTAAGGTACTGCGGATTTTTGAGGAAGTGCG
CGCCGAGTTTGACTTTCTGCAAAACTCTCTCGCGCGGCTCTTTCTCTTTA
TCAAAGAAGTCCCCCCTACCGCCACCAGCAGCAGCACCAGTAACAGCAGC
AGTAACGGCAGCATAGCAATAGCGCTTGCGTCGTCATCCTCCTCCTCCGC
CGCCTCTTCATTTTATTTGGGAAGTGGTGGGGGCATGCAGCAAGTGCGGG
GATTCATGACTTCTTTTCGCAATAAGATTCAAAGAAGCGCAGTCTCTGCG
ATGACTGCGGTTGAACGCATAGGGGTGGCCTTGCCTGCCAAAATAAATGA
TGAAGACCTCTTATCCTACGCTAGCTTGGTCTCTGAGATGTGTCATAAGG
CCCAGAGGCTCGACGAATGGTTTGTTTCCCTGGATTGTCGGAGAAGAGAG
TTACAGGAAGCATTGCGAAGAGAGGCATCTCCGTCAGCTTCATCTACTTC
TTCCTCTTCCGCGTCCTCCTTTTCTTCCTCATCTTTATCAGGGAAAGAAG
CAACCCAAGCGCTGTTGCACCAAGTGGAGGGCATTCTGGTGGAATTGCTG
CATTGTGCCAGATTTCTGCAGGAGGTGGTGATCGAGCTTCTTCTACGAGA
CGTAGAATCGTTGGTGGACTCGTATTTGCGCAAGGCCCGCAAAGTGTTCA
CGAGAATGGTTTGGGAGTTGGAGGAGCAGGAGAATAGCTAG
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Coding sequence (CDS) from alignment at scaffold_18:294538..295878-

>mRNA_6620 ID=mRNA_6620|Name=jgi.p|Nanoce1779_2|640901|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_18:294538..295878- (Nannochloropsis oceanica)
ATGCCGGACATTTGTCCGTCGCCCGCGCTTAAGAGCAGCAAAGACGACTC
GGAGATGACACATGAGTCCCGGCTTGCCGACACAGGCAGGAGCAGCATTT
CTACCCTCGACGTGACACCCACAGCATCATCGCATCCCACCTCAACTACA
TCAGCCCTTCCTCCGCTCTTAGACCAGTTAAGTATGCGCCAGCCGCCCCC
ATCGGGCACCTCGACAAATACCAAGATGCCAGTGACAACACGAATTAGGC
CTTTGTCACGAAGCTCCCTTGAAAGCACCATGGACGAACTAAGCGAAGTG
AGTGGAGGCGTCTCAGGCGAAGATACGAGTAAATTATCCGAGCCCGAAAA
CTCGTTACGACGGCCCTTCTGGCAGTTGAATCTCCTTCGAGCCACCATCA
CGACGGGAGGATTTCTCACACCGCGCTTACATGTACCTCGCTTGGTCTGG
GAACAATGGGGCGCCAAGTTGAACGGTTTGACCACCAAAGCCACAGCTTT
TGAGGCTGTCTTAAGTCTACTTGTGGACCGCATTTTGCCCTTGGAGCTCC
TATCGAGCATCAATGACCCCAGCAGGAAAACCCAAAATGAGGATGGCGAG
GCCGCAAGGAGGGACCTAGCTAAGGTACTGCGGATTTTTGAGGAAGTGCG
CGCCGAGTTTGACTTTCTGCAAAACTCTCTCGCGCGGCTCTTTCTCTTTA
TCAAAGAAGTCCCCCCTACCGCCACCAGCAGCAGCACCAGTAACAGCAGC
AGTAACGGCAGCATAGCAATAGCGCTTGCGTCGTCATCCTCCTCCTCCGC
CGCCTCTTCATTTTATTTGGGAAGTGGTGGGGGCATGCAGCAAGTGCGGG
GATTCATGACTTCTTTTCGCAATAAGATTCAAAGAAGCGCAGTCTCTGCG
ATGACTGCGGTTGAACGCATAGGGGTGGCCTTGCCTGCCAAAATAAATGA
TGAAGACCTCTTATCCTACGCTAGCTTGGTCTCTGAGATGTGTCATAAGG
CCCAGAGGCTCGACGAATGGTTTGTTTCCCTGGATTGTCGGAGAAGAGAG
TTACAGGAAGCATTGCGAAGAGAGGCATCTCCGTCAGCTTCATCTACTTC
TTCCTCTTCCGCGTCCTCCTTTTCTTCCTCATCTTTATCAGGGAAAGAAG
CAACCCAAGCGCTGTTGCACCAAGTGGAGGGCATTCTGGTGGAATTGCTG
CATTGTGCCAGATTTCTGCAGGAGGTGGTGATCGAGCTTCTTCTACGAGA
CGTAGAATCGTTGGTGGACTCGTATTTGCGCAAGGCCCGCAAAGTGTTCA
CGAGAATGGTTTGGGAGTTGGAGGAGCAGGAGAATAGCTAG
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Synonyms
Publications