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Properties
| Property Name | Value |
|---|
| TranscriptId | 573780 |
| Track | FilteredModels2 |
| ProteinId | 573694 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:130665..133038 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_662 ID=mRNA_662|Name=jgi.p|Nanoce1779_2|573694|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp
ACAGGCCACAACAAAACAGCCAAAAGCATCAGTACAAAGACGACGATATA
AGCTCCCCCAGCGGAACTGTGATTCCCACACCCCATGGTGCCTTCACCGT
CATCATCTAAGGCAGGGGGTGGGGAGGTGAAGGCAGTAGCTCCTCAAGGA
CCCGCACAACGACGCGCAAGAAGAAGAAATATTACATTCCAGCTACCTCT
ACTTATCATCGTCATCTTTGTCGCTTTAGCAGGCAGTGCGCAGGCCTTTA
TACGCCTTCGGCCCTCTCCATCCTCCTCCTCCTCCTCTTCCTGCCCTGCT
CCACGCCTCCTTACCCAAGCCCACCTTTTTGGCCTCGGCGGCCGCAGCGA
CAATAAAAACAAAAGCAGCCCAACAGGCATGAAAGCGCCAACTCCTAGAC
CTTTTGCGCCTGAGAACATGGCCACATATGACGACGACCTCTTTGCTAAA
ATCTGGATTTTCCTCTTCAGTGGCAAAATTGCTGCCGTGGTCGGCGTCCC
TTCCCCCCGCCGCTTCATCGAATACGAGGAATACGTCCGTCTCTCTCAGC
TTCTGCTGAAGGCAGGATCAACCAAGGCAAAAACTGCTGTGTTGACCGTC
TTGCGCTCCATTGCCTTTCCGGGGTTTTCCTCCATTTTTCGCACGCTTTT
TCCTGGCACCTCGCGATTTGCCTGTGAGTTTAATGCCAAAGTAACGCCGG
TGTTTTTCAGCTGGTTGGTGGGGCCGGCGGTGGTGGAGACGTCGGAGATG
CGGAATCCGAAGACGGATGAGGTCGAGGTATGGGCCAATAGTGTGAAGAT
TCAGCGGTGCCGGTACCTGGAGAGCGTCCAGTGCAAGGGGGCGTGTGCCA
GCATCTGCAAGCTCCCGACCCAAGCGTTCTTTACGGAGGATTTGGGTATG
CCCGTGACCATGACGCCAAATTTTGATGATTTGAGTTGCACCATGACCTT
CGGCGTGGCCCCTTTGGCCTCCTCCGCCGACCCTATTTGCTCCGAAGGAT
GCTTCAAAGAGTGCTCAAGCGCCATCATCTCCAAGAAAGCCTGCCCCAAG
ATCATGGCAGCTTTGAATGGGGGGGAGTAAGCAGAGAGGGAGGAGGGGGA
AGAGGTATGTATGTATATATTTACATATGTATATAAATGTGTGTGTGTGT
GTGTAGGTGTGTGTGTGTGGGTGGGTGTGAGCGAATGTCTTGTTTTTGTT
AGTTGTCTCTGCCTGTCTGGTGATAGGGGGAAGAGGCAGGACGGTGTATG
CACAAAACTTGCCAAAAACGAATGGTAGAATTTGAAAGACGTGTAAGAGA
TCAAAAGAATGACCAGAGAAGGAGGCTGTTGGTTCTCTCGCACTACCTTG
TGGTGTCTTCCTTCCGCCCCTTGTGCCTCTCCTTTCCTCCTGAAAAGGAA
GAAGAAGAAGGTTGCGTTTTTGATGGGACTGAAAGGGATTGAAAGAGGAA
CTCGATAGACGATGAAGTCGGCCTCCTAGAAGGATAGAAATAGGGCTGGA
CGAACAACTTGCCTCTCAATGGAATGAGATTGGCTCGCTACAGTCCCTGC
CCACAATGGTGCATATGGTGTGAGGGTGTGTCTGTTCAAAATGCAGAAGG
GTTTCAGTACATTTACACTGATGCAAGATCAATTGCGGGGGGTAGAGACG
AGTTTTTCATTTTGTGAGATTGATTTGGAACGTGATTAAGTCTCAAGTAT
GTCGAAATATTGTATTGTTTTAATCCGATTTTAGATGGAGGGCGTGCTGA
CCAATCTCCCCACCCTCACTTCCTTCTCCAACTCGTACAAGCAGGCATGT
GGGAAACAGAATTGCCCGCGCGGCGTCGTAAATAGTACGTTCTGGTTGAA
AAATAAACAGTAAATAAAAGGTCTCAAGAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|573694 >mRNA_662-protein ID=mRNA_662-protein|Name=jgi.p|Nanoce1779_2|573694|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MVPSPSSSKAGGGEVKAVAPQGPAQRRARRRNITFQLPLLIIVIFVALAG
SAQAFIRLRPSPSSSSSSSCPAPRLLTQAHLFGLGGRSDNKNKSSPTGMK
APTPRPFAPENMATYDDDLFAKIWIFLFSGKIAAVVGVPSPRRFIEYEEY
VRLSQLLLKAGSTKAKTAVLTVLRSIAFPGFSSIFRTLFPGTSRFACEFN
AKVTPVFFSWLVGPAVVETSEMRNPKTDEVEVWANSVKIQRCRYLESVQC
KGACASICKLPTQAFFTEDLGMPVTMTPNFDDLSCTMTFGVAPLASSADP
ICSEGCFKECSSAIISKKACPKIMAALNGGE* back to topmRNA from alignment at scaffold_2:130665..133038+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_662 ID=mRNA_662|Name=jgi.p|Nanoce1779_2|573694|organism=Nannochloropsis oceanica|type=mRNA|length=2374bp|location=Sequence derived from alignment at scaffold_2:130665..133038+ (Nannochloropsis oceanica)
ACAGGCCACAACAAAACAGCCAAAAGCATCAGTACAAAGACGACGATATA
AGCTCCCCCAGCGGAACTGTGATTCCCACACCCCATGGTGCCTTCACCGT
CATCATCTAAGGCAGGGGGTGGGGAGGTGAAGGCAGTAGCTCCTCAAGGA
CCCGCACAACGACGCGCAAGAAGAAGAAATATTACATTCCAGCTACCTCT
ACTTATCATCGTCATCTTTGTCGCTTTAGCAGGCAGTGCGCAGGCCTTTA
TACGCCTTCGGCCCTCTCCATCCTCCTCCTCCTCCTCTTCCTGCCCTGCT
CCACGCCTCCTTACCCAAGCCCACCTTTTTGGCCTCGGCGGCCGCAGCGA
CAATAAAAACAAAAGCAGCCCAACAGGCATGAAAGCGCCAACTCCTAGAC
CTTTTGCGCCTGAGAACATGGCCACATATGACGACGACCTCTTTGCTAAA
ATCTGGATTTTCCTCTTCAGTGGCAAAATTGCTGCCGTGGTCGGCGTCCC
TTCCCCCCGCCGCTTCATCGAATACGAGGAATACGTCCGTCTCTCTCAGC
TTCTGCTGAAGGCAGGATCAACCAAGGCAAAAACTGCTGTGTTGACCGTC
TTGCGCTCCATTGCCTTTCCGGGGTTTTCCTCCATTTTTCGCACGCTTTT
TCCTGGCACCTCGCGATTTGCCTGTGAGTTTAATGCCAAAGTAACGCCGG
TGTTTTTCAGCTGGTTGGTGGGGCCGGCGGTGGTGGAGACGTCGGAGATG
CGGAATCCGAAGACGTGCGTAATTTTGGAGGGAGGGAAGGGGGGAGAGAA
GGGAGGGAGGGAGGGAGAGTGGGTGCGCGGCTTGGGTAGATCCGTAGGGG
GGAAGGGAAGGCCAACGCACTTACACAAGTACGAACAAATCACATTCTAC
TCCCACAGGGATGAGGTCGAGGTATGGGCCAATAGTGTGAAGATTCAGCG
GTGCCGGTACCTGGAGAGCGTCCAGTGCAAGGGGGCGTGTGCCAGCATCT
GCAAGCTCCCGACCCAAGCGTTCTTTACGGAGGATTTGGGTATGCCCGTG
ACCATGACGCCAAATTTTGATGATTTGAGGTAGGGACAAGGGGATGGAAG
GAGGAGAATAAGGGAAGGGGCGAGGGAGACTCTTCCCCCCCTGCCTCTTC
CAACAACTCAACTTGCACCTACACGCGCCGTTTTAGGGAAATATCTCGCC
CACTTTGCGGAGAGAGAGGAGAAGCTAAGAGATGAAGGGACTTTGCGGCC
AGACATTGACTACGAGACACACAAGCTAACCCCTCTCCTTCTTGTCTTCT
CACAAAGCCTGCGCTTGGGTGTCGGTCAACAAACTACATGTATCTTGACA
GATGCTCATCAGCTCTTCTTCTATATCACCCACTTCCTTTCTCCTCTTTC
CCCTTCCTCCCATCCTCCCTCATGCAGTTGCACCATGACCTTCGGCGTGG
CCCCTTTGGCCTCCTCCGCCGACCCTATTTGCTCCGAAGGATGCTTCAAA
GAGTGCTCAAGCGCCATCATCTCCAAGAAAGCCTGCCCCAAGATCATGGC
AGCTTTGAATGGGGGGGAGTAAGCAGAGAGGGAGGAGGGGGAAGAGGTAT
GTATGTATATATTTACATATGTATATAAATGTGTGTGTGTGTGTGTAGGT
GTGTGTGTGTGGGTGGGTGTGAGCGAATGTCTTGTTTTTGTTAGTTGTCT
CTGCCTGTCTGGTGATAGGGGGAAGAGGCAGGACGGTGTATGCACAAAAC
TTGCCAAAAACGAATGGTAGAATTTGAAAGACGTGTAAGAGATCAAAAGA
ATGACCAGAGAAGGAGGCTGTTGGTTCTCTCGCACTACCTTGTGGTGTCT
TCCTTCCGCCCCTTGTGCCTCTCCTTTCCTCCTGAAAAGGAAGAAGAAGA
AGGTTGCGTTTTTGATGGGACTGAAAGGGATTGAAAGAGGAACTCGATAG
ACGATGAAGTCGGCCTCCTAGAAGGATAGAAATAGGGCTGGACGAACAAC
TTGCCTCTCAATGGAATGAGATTGGCTCGCTACAGTCCCTGCCCACAATG
GTGCATATGGTGTGAGGGTGTGTCTGTTCAAAATGCAGAAGGGTTTCAGT
ACATTTACACTGATGCAAGATCAATTGCGGGGGGTAGAGACGAGTTTTTC
ATTTTGTGAGATTGATTTGGAACGTGATTAAGTCTCAAGTATGTCGAAAT
ATTGTATTGTTTTAATCCGATTTTAGATGGAGGGCGTGCTGACCAATCTC
CCCACCCTCACTTCCTTCTCCAACTCGTACAAGCAGGCATGTGGGAAACA
GAATTGCCCGCGCGGCGTCGTAAATAGTACGTTCTGGTTGAAAAATAAAC
AGTAAATAAAAGGTCTCAAGAAAA back to topCoding sequence (CDS) from alignment at scaffold_2:130665..133038+ >mRNA_662 ID=mRNA_662|Name=jgi.p|Nanoce1779_2|573694|organism=Nannochloropsis oceanica|type=CDS|length=2988bp|location=Sequence derived from alignment at scaffold_2:130665..133038+ (Nannochloropsis oceanica)
ATGGTGCCTTCACCGTCATCATCTAAGGCAGGGGGTGGGGAGGTGAAGGC
AGTAGCTCCTCAAGGACCCGCACAACGACGCGCAAGAAGAAGAAATATTA
CATTCCAGCTACCTCTACTTATCATCGTCATCTTTGTCGCTTTAGCAGGC
AGTGCGCAGGCCTTTATACGCCTTCGGCCCTCTCCATCCTCCTCCTCCTC
CTCTTCCTGCCCTGCTCCACGCCTCCTTACCCAAGCCCACCTTTTTGGCC
TCGGCGGCCGCAGCGACAATAAAAACAAAAGCAGCCCAACAGGCATGAAA
GCGCCAACTCCTAGACCTTTTGCGCCTGAGAACATGGCCACATATGACGA
CGACCTCTTTGCTAAAATCTGGATTTTCCTCTTCAGTGGCAAAATTGCTG
CCGTGGTCGGCGTCCCTTCCCCCCGCCGCTTCATCGAATACGAGGAATAC
GTCCGTCTCTCTCAGCTTCTGCTGAAGGCAGGATCAACCAAGGCAAAAAC
TGCTGTGTTGACCGTCTTGCGCTCCATTGCCTTTCCGGGGTTTTCCTCCA
TTTTTCGCACGCTTTTTCCTGGCACCTCGCGATTTGCCTGTGAGTTTAAT
GCCAAAGTAACGCCGGTGTTTTTCAGCTGGTTGGTGGGGCCGGCGGTGGT
GGAGACGTCGGAGATGCGGAATCCGAAGACGGATGAGGTCGAGGTATGGG
CCAATAGTGTGAAGATTCAGCGGTGCCGGTACCTGGAGAGCGTCCAGTGC
AAGGGGGCGTGTGCCAGCATCTGCAAGCTCCCGACCCAAGCGTTCTTTAC
GGAGGATTTGGGTATGCCCGTGACCATGACGCCAAATTTTGATGATTTGA
GTTGCACCATGACCTTCGGCGTGGCCCCTTTGGCCTCCTCCGCCGACCCT
ATTTGCTCCGAAGGATGCTTCAAAGAGTGCTCAAGCGCCATCATCTCCAA
GAAAGCCTGCCCCAAGATCATGGCAGCTTTGAATGGGGGGGAGTAAATGG
TGCCTTCACCGTCATCATCTAAGGCAGGGGGTGGGGAGGTGAAGGCAGTA
GCTCCTCAAGGACCCGCACAACGACGCGCAAGAAGAAGAAATATTACATT
CCAGCTACCTCTACTTATCATCGTCATCTTTGTCGCTTTAGCAGGCAGTG
CGCAGGCCTTTATACGCCTTCGGCCCTCTCCATCCTCCTCCTCCTCCTCT
TCCTGCCCTGCTCCACGCCTCCTTACCCAAGCCCACCTTTTTGGCCTCGG
CGGCCGCAGCGACAATAAAAACAAAAGCAGCCCAACAGGCATGAAAGCGC
CAACTCCTAGACCTTTTGCGCCTGAGAACATGGCCACATATGACGACGAC
CTCTTTGCTAAAATCTGGATTTTCCTCTTCAGTGGCAAAATTGCTGCCGT
GGTCGGCGTCCCTTCCCCCCGCCGCTTCATCGAATACGAGGAATACGTCC
GTCTCTCTCAGCTTCTGCTGAAGGCAGGATCAACCAAGGCAAAAACTGCT
GTGTTGACCGTCTTGCGCTCCATTGCCTTTCCGGGGTTTTCCTCCATTTT
TCGCACGCTTTTTCCTGGCACCTCGCGATTTGCCTGTGAGTTTAATGCCA
AAGTAACGCCGGTGTTTTTCAGCTGGTTGGTGGGGCCGGCGGTGGTGGAG
ACGTCGGAGATGCGGAATCCGAAGACGGATGAGGTCGAGGTATGGGCCAA
TAGTGTGAAGATTCAGCGGTGCCGGTACCTGGAGAGCGTCCAGTGCAAGG
GGGCGTGTGCCAGCATCTGCAAGCTCCCGACCCAAGCGTTCTTTACGGAG
GATTTGGGTATGCCCGTGACCATGACGCCAAATTTTGATGATTTGAGTTG
CACCATGACCTTCGGCGTGGCCCCTTTGGCCTCCTCCGCCGACCCTATTT
GCTCCGAAGGATGCTTCAAAGAGTGCTCAAGCGCCATCATCTCCAAGAAA
GCCTGCCCCAAGATCATGGCAGCTTTGAATGGGGGGGAGTAAATGGTGCC
TTCACCGTCATCATCTAAGGCAGGGGGTGGGGAGGTGAAGGCAGTAGCTC
CTCAAGGACCCGCACAACGACGCGCAAGAAGAAGAAATATTACATTCCAG
CTACCTCTACTTATCATCGTCATCTTTGTCGCTTTAGCAGGCAGTGCGCA
GGCCTTTATACGCCTTCGGCCCTCTCCATCCTCCTCCTCCTCCTCTTCCT
GCCCTGCTCCACGCCTCCTTACCCAAGCCCACCTTTTTGGCCTCGGCGGC
CGCAGCGACAATAAAAACAAAAGCAGCCCAACAGGCATGAAAGCGCCAAC
TCCTAGACCTTTTGCGCCTGAGAACATGGCCACATATGACGACGACCTCT
TTGCTAAAATCTGGATTTTCCTCTTCAGTGGCAAAATTGCTGCCGTGGTC
GGCGTCCCTTCCCCCCGCCGCTTCATCGAATACGAGGAATACGTCCGTCT
CTCTCAGCTTCTGCTGAAGGCAGGATCAACCAAGGCAAAAACTGCTGTGT
TGACCGTCTTGCGCTCCATTGCCTTTCCGGGGTTTTCCTCCATTTTTCGC
ACGCTTTTTCCTGGCACCTCGCGATTTGCCTGTGAGTTTAATGCCAAAGT
AACGCCGGTGTTTTTCAGCTGGTTGGTGGGGCCGGCGGTGGTGGAGACGT
CGGAGATGCGGAATCCGAAGACGGATGAGGTCGAGGTATGGGCCAATAGT
GTGAAGATTCAGCGGTGCCGGTACCTGGAGAGCGTCCAGTGCAAGGGGGC
GTGTGCCAGCATCTGCAAGCTCCCGACCCAAGCGTTCTTTACGGAGGATT
TGGGTATGCCCGTGACCATGACGCCAAATTTTGATGATTTGAGTTGCACC
ATGACCTTCGGCGTGGCCCCTTTGGCCTCCTCCGCCGACCCTATTTGCTC
CGAAGGATGCTTCAAAGAGTGCTCAAGCGCCATCATCTCCAAGAAAGCCT
GCCCCAAGATCATGGCAGCTTTGAATGGGGGGGAGTAA back to top
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