jgi.p|Nanoce1779_2|597500, mRNA_6619 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597500
Unique NamemRNA_6619
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1010
Alignment locationscaffold_18:293368..294377 -

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Properties
Property NameValue
TranscriptId597586
TrackFilteredModels2
ProteinId597500
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:293368..294377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597500gene_6619Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597500mRNA_6619-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6619CDS_6619Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6619 ID=mRNA_6619|Name=jgi.p|Nanoce1779_2|597500|organism=Nannochloropsis oceanica|type=mRNA|length=1010bp
GGGCACGTTCCCTGGATAGGACTCTTTGGTTGGCTTTCCACAGTGGTATG
AATGATGTTTTCTGGGAAACCCCAGAAAATTTTGTCGAAGGTTCATCTGC
GGCTTTCTTCGTCTACATTCTCTCTACTTTATTTGTATTGGAATATTTAC
ACCCATCTGGCTCCGCGCGGGGGAAATTAATTTTGTGGCCATTCTCTTTC
TTGTCATCACGCTTTCTCCTCCTTACACTTCACCTGATACCGGCTCCGTC
TTTTTCATGTGTGGGCTGATTCCGATAATTCGCGTGACGATAGAAAGCAG
GGGAAGATATGCATTCATGACATTGGCAACACTTCAATTGCTGCTGCTGC
CTCAAACGTTGACTGTACGTAGACACCTTGATCTTCTTTCTGGATCCCTT
CGCAAGCTCCCTTTGTCAAACCAAATCCTTCTCCCCTTCCTCTTCCACGT
TTTTTTCCACCAGGTCACATCAGGAAATCGTCCGAAATATAAAATGATTC
GCTGGGGTCCAACTCCAGAGAAGGATGCCGCTCATTACCCACTGTCAGCC
CATCCCCCATCATCATTCCTCCCCCCCCTCCACCCTCACATTCCCCTCCA
TCCCCCAAATAGACGTCTTTGCCCCCCAACTGCTGGTGTTGATCGAAGTG
GTACAATGGTTGCTGCTGCGGCTGGAAAAATAATCCCCCACCAGCAGCAG
TGGGAGAATTCAAAAAATCCTCTTCTGGCGCACAAAGTTGCTGCGGCTGC
GCGGTGGCATTCGATACTTTAAAAGTAGGAAGAATAGCAGCAGCAGCTGG
ACCAGGAGCAGGAGTGGCAGGAGCAGGAGCAGGAAAGGCTTCCAAGCCTA
GGAAACGATGAGGGGGGATGGAAGCGGGGGAGGAGTGGGGAGGTCGCTGT
AAGGAGAGGCCAACCCTATCCAGCTGCTGCTGCTGCTGCTGCTGCCGTTG
CTGCAGCAGCTGCTGGTGGTGGTAGGAGGATAGCTGATTGCGGCGCTGCT
GCAGTAGCTG
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protein sequence of jgi.p|Nanoce1779_2|597500

>mRNA_6619-protein ID=mRNA_6619-protein|Name=jgi.p|Nanoce1779_2|597500|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MCGLIPIIRVTIESRGRYAFMTLATLQLLLLPQTLTVRRHLDLLSGSLRK
LPLSNQILLPFLFHVFFHQVTSGNRPKYKMIRWGPTPEKDAAHYPLSAHP
PSSFLPPLHPHIPLHPPNRRLCPPTAGVDRSGTMVAAAAGKIIPHQQQWE
NSKNPLLAHKVAAAARWHSIL*
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mRNA from alignment at scaffold_18:293368..294377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6619 ID=mRNA_6619|Name=jgi.p|Nanoce1779_2|597500|organism=Nannochloropsis oceanica|type=mRNA|length=1010bp|location=Sequence derived from alignment at scaffold_18:293368..294377- (Nannochloropsis oceanica)
GGGCACGTTCCCTGGATAGGACTCTTTGGTTGGCTTTCCACAGTGGTATG
AATGATGTTTTCTGGGAAACCCCAGAAAATTTTGTCGAAGGTTCATCTGC
GGCTTTCTTCGTCTACATTCTCTCTACTTTATTTGTATTGGAATATTTAC
ACCCATCTGGCTCCGCGCGGGGGAAATTAATTTTGTGGCCATTCTCTTTC
TTGTCATCACGCTTTCTCCTCCTTACACTTCACCTGATACCGGCTCCGTC
TTTTTCATGTGTGGGCTGATTCCGATAATTCGCGTGACGATAGAAAGCAG
GGGAAGATATGCATTCATGACATTGGCAACACTTCAATTGCTGCTGCTGC
CTCAAACGTTGACTGTACGTAGACACCTTGATCTTCTTTCTGGATCCCTT
CGCAAGCTCCCTTTGTCAAACCAAATCCTTCTCCCCTTCCTCTTCCACGT
TTTTTTCCACCAGGTCACATCAGGAAATCGTCCGAAATATAAAATGATTC
GCTGGGGTCCAACTCCAGAGAAGGATGCCGCTCATTACCCACTGTCAGCC
CATCCCCCATCATCATTCCTCCCCCCCCTCCACCCTCACATTCCCCTCCA
TCCCCCAAATAGACGTCTTTGCCCCCCAACTGCTGGTGTTGATCGAAGTG
GTACAATGGTTGCTGCTGCGGCTGGAAAAATAATCCCCCACCAGCAGCAG
TGGGAGAATTCAAAAAATCCTCTTCTGGCGCACAAAGTTGCTGCGGCTGC
GCGGTGGCATTCGATACTTTAAAAGTAGGAAGAATAGCAGCAGCAGCTGG
ACCAGGAGCAGGAGTGGCAGGAGCAGGAGCAGGAAAGGCTTCCAAGCCTA
GGAAACGATGAGGGGGGATGGAAGCGGGGGAGGAGTGGGGAGGTCGCTGT
AAGGAGAGGCCAACCCTATCCAGCTGCTGCTGCTGCTGCTGCTGCCGTTG
CTGCAGCAGCTGCTGGTGGTGGTAGGAGGATAGCTGATTGCGGCGCTGCT
GCAGTAGCTG
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Coding sequence (CDS) from alignment at scaffold_18:293368..294377-

>mRNA_6619 ID=mRNA_6619|Name=jgi.p|Nanoce1779_2|597500|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_18:293368..294377- (Nannochloropsis oceanica)
ATGTGTGGGCTGATTCCGATAATTCGCGTGACGATAGAAAGCAGGGGAAG
ATATGCATTCATGACATTGGCAACACTTCAATTGCTGCTGCTGCCTCAAA
CGTTGACTGTACGTAGACACCTTGATCTTCTTTCTGGATCCCTTCGCAAG
CTCCCTTTGTCAAACCAAATCCTTCTCCCCTTCCTCTTCCACGTTTTTTT
CCACCAGGTCACATCAGGAAATCGTCCGAAATATAAAATGATTCGCTGGG
GTCCAACTCCAGAGAAGGATGCCGCTCATTACCCACTGTCAGCCCATCCC
CCATCATCATTCCTCCCCCCCCTCCACCCTCACATTCCCCTCCATCCCCC
AAATAGACGTCTTTGCCCCCCAACTGCTGGTGTTGATCGAAGTGGTACAA
TGGTTGCTGCTGCGGCTGGAAAAATAATCCCCCACCAGCAGCAGTGGGAG
AATTCAAAAAATCCTCTTCTGGCGCACAAAGTTGCTGCGGCTGCGCGGTG
GCATTCGATACTTTAA
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Synonyms
Publications