jgi.p|Nanoce1779_2|597498, mRNA_6618 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597498
Unique NamemRNA_6618
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1263
Alignment locationscaffold_18:291077..292445 -

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Properties
Property NameValue
TranscriptId597584
TrackFilteredModels2
ProteinId597498
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:291077..292445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597498gene_6618Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597498mRNA_6618-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6618CDS_6618Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6618 ID=mRNA_6618|Name=jgi.p|Nanoce1779_2|597498|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp
ACTTCTCCTCCTGCTGCCACCCCTTCTGCTCCCCCTTGCGACGTCTCCAC
TTGTGCTCGCAACGAAGTAAGTCCTCCACTTCTTCCTTCTCCTCCTTCCT
GCTCACCAGCATGACCATTTTTAGGGCTCCAAAAGTTCAACGTTCCGTTG
CCAAGCGATGCCAAATCTGCCCACTCATGAGCATTCCCAATCTCAAACAA
ATCATTGCTCCTGCTCCTGCTCCTGCTGCTGCTGATGGTTGTGTTGGTGG
TGACATTTAGCGGTGGTGGTGCCTCCTGCTGCTGCAGTCGGGTTGGAGGG
ACTAATGGAGAAGTGGGTGAAGGAGTTTGAGATGTGGATATGCTGCTGCT
GCTACTGCCACTGCTGCTGTTGCTGCTGCTACTGCTGCTACTGCTGTTTT
TAGTATTGGTGGTGGCACTGCTGACCGAGCCCCTCGCAAGAGAGGAGGTT
GGCTCGAGGACGGAGGCTAGGAGGGGAGCGGAGGAGGCATTGCCGCTATC
TTCCAGCTTCTCCTTCTCCACCTCCTCCTTTCCAGCCTCTTCGTCCTCTT
TCGGTTCCCCTTCATTCTTGTCGTTGACCTTGTTGTCTACCAGGTAGAGG
GAGGATCCATCACTGGCCGCCTCTAGCGTCGACCGTATGCTGGGCTTGAC
GCTGCTGCTTCGGCTGCTGCTGCTAATGGTTGTTGCAGCAATCTTTCCCA
CACCCATCTTCAGGTCTCCTTCCACAGGAAGACCCCGAGCTGCTGCGGCC
ACCTGAGTTTTAGAAATTTTATCACGGCGCCGAGCGGCCGAATTCCACCT
GTTCTTCACCGCATTCTCCGACCTTCCTGGGACCTCCTTTGCAATCTTCG
TCCAAGCATTGCCCCATTTTCTCTGTGCTGCCAACAACAACCCGTCCTCT
TCCTCGGTCCACCCCCCCTTCTTCAAGGCCGGGTTCAGGTGATTATACCA
CCTCTCACGACATTGCTTCCCTATCCTCCCCGGGACCTTCTCGGCGACTT
CCGACCATTTCATGATTCCGTTCTGGACACAGGACATGATGATGGCGTCT
TCTTCCCTTGTCCACGGGCCTTTGACCAAGCCGGGATGGAGGACTTTATT
CCAACGATGGAGGCATTGCACATCGGAGCGTTTCCCATCGAGGAACTCTT
CGGAAATAACTTTCCAAGAGTGCGCCCCTTTAGTCGCGATGGCGATCCGG
AGCTTCTCGTCCTCTTCTTTGGTCCAGCGGCCGTAAAGGATGTTGGTGGC
AGTGACTGTGGTT
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protein sequence of jgi.p|Nanoce1779_2|597498

>mRNA_6618-protein ID=mRNA_6618-protein|Name=jgi.p|Nanoce1779_2|597498|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MLLLLLPLLLLLLLLLLLLFLVLVVALLTEPLAREEVGSRTEARRGAEEA
LPLSSSFSFSTSSFPASSSSFGSPSFLSLTLLSTR*
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mRNA from alignment at scaffold_18:291077..292445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6618 ID=mRNA_6618|Name=jgi.p|Nanoce1779_2|597498|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp|location=Sequence derived from alignment at scaffold_18:291077..292445- (Nannochloropsis oceanica)
ACTTCTCCTCCTGCTGCCACCCCTTCTGCTCCCCCTTGCGACGTCTCCAC
TTGTGCTCGCAACGAAGTAAGTCCTCCACTTCTTCCTTCTCCTCCTTCCT
GCTCACCAGCATGACCATTTTTAGGGCTCCAAAAGTTCAACGTTCCGTTG
CCAAGCGATGCCAAATCTGCCCACTCATGAGCATTCCCAATCTCAAACAA
ATCATTGCTCCTGCTCCTGCTCCTGCTGCTGCTGATGGTTGTGTTGGTGG
TGACATTTAGCGGTGGTGGTGCCTCCTGCTGCTGCAGTCGGGTTGGAGGG
ACTAATGGAGAAGTGGGTGAAGGAGTTTGAGATGTGGATATGCTGCTGCT
GCTACTGCCACTGCTGCTGTTGCTGCTGCTACTGCTGCTACTGCTGTTTT
TAGTATTGGTGGTGGCACTGCTGACCGAGCCCCTCGCAAGAGAGGAGGTT
GGCTCGAGGACGGAGGCTAGGAGGGGAGCGGAGGAGGCATTGCCGCTATC
TTCCAGCTTCTCCTTCTCCACCTCCTCCTTTCCAGCCTCTTCGTCCTCTT
TCGGTTCCCCTTCATTCTTGTCGTTGACCTTGTTGTCTACCAGGTAGAGG
GAGGATCCATCACTGGCCGCCTCTAGCGTCGACCGTATGCTGGGCTTGAC
GCTGCTGCTTCGGCTGCTGCTGCTAATGGTTGTTGCAGCAATCTTTCCCA
CACCCATCTTCAGGTCTCCTTCCACAGGAAGACCCCGAGCTGCTGCGGCC
ACCTGAGTTTTAGAAATTTTATCACGGCGCCGAGCGGCCGAATTCCACCT
GTTGACACAAATCGAGAAAATAGAAAGTCCATGTAAGATGGCACTCTTTC
TCTCGATGCTTCCTCCCTTCCTCCCTGCATCCCCCTCTCCCCCCTTCCTC
TCACCTGTTCTTCACCGCATTCTCCGACCTTCCTGGGACCTCCTTTGCAA
TCTTCGTCCAAGCATTGCCCCATTTTCTCTGTGCTGCCAACAACAACCCG
TCCTCTTCCTCGGTCCACCCCCCCTTCTTCAAGGCCGGGTTCAGGTGATT
ATACCACCTCTCACGACATTGCTTCCCTATCCTCCCCGGGACCTTCTCGG
CGACTTCCGACCATTTCATGATTCCGTTCTGGACACAGGACATGATGATG
GCGTCTTCTTCCCTTGTCCACGGGCCTTTGACCAAGCCGGGATGGAGGAC
TTTATTCCAACGATGGAGGCATTGCACATCGGAGCGTTTCCCATCGAGGA
ACTCTTCGGAAATAACTTTCCAAGAGTGCGCCCCTTTAGTCGCGATGGCG
ATCCGGAGCTTCTCGTCCTCTTCTTTGGTCCAGCGGCCGTAAAGGATGTT
GGTGGCAGTGACTGTGGTT
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Coding sequence (CDS) from alignment at scaffold_18:291077..292445-

>mRNA_6618 ID=mRNA_6618|Name=jgi.p|Nanoce1779_2|597498|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_18:291077..292445- (Nannochloropsis oceanica)
ATGCTGCTGCTGCTACTGCCACTGCTGCTGTTGCTGCTGCTACTGCTGCT
ACTGCTGTTTTTAGTATTGGTGGTGGCACTGCTGACCGAGCCCCTCGCAA
GAGAGGAGGTTGGCTCGAGGACGGAGGCTAGGAGGGGAGCGGAGGAGGCA
TTGCCGCTATCTTCCAGCTTCTCCTTCTCCACCTCCTCCTTTCCAGCCTC
TTCGTCCTCTTTCGGTTCCCCTTCATTCTTGTCGTTGACCTTGTTGTCTA
CCAGGTAG
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Synonyms
Publications