jgi.p|Nanoce1779_2|651629, mRNA_6617 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|651629
Unique Name	mRNA_6617
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1565
Alignment location	scaffold_18:289879..291545 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	651715
Track	FilteredModels2
ProteinId	651629

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:289879..291545 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651629	gene_6617	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651629	mRNA_6617-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6617	CDS_6617	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:289879..291545+
coding sequence from alignment at scaffold_18:289879..291545+

mRNA sequence

>mRNA_6617 ID=mRNA_6617|Name=jgi.p|Nanoce1779_2|651629|organism=Nannochloropsis oceanica|type=mRNA|length=1565bp
ATGCGATAGTTCCGATATAAATCCGTACCCATCGCAGGTGTGGTTGTCTG
GGTCTTTTGGGCACATCACGCACGGAATCAAATGTGCTGCTCCATCGCCC
AGCATTGAGACAAGGACACATAAGGCCACTCGCATCCACCCCTCATCGGG
CAAATTTATCGGAAGGCCAGTCCGACGTGCGAAAAGTATTCTGTGTCGTA
CAAGCCCTCTCGATGGACCCTCATCCCGACACCGAGGCTAACCTGACTGC
GGCTCCCACCTCAGACCAAGGCAGCACCTCTTCCTCCTCATCGGTGGGGA
AGGCACCATCCCCCCTGCCACCAATCGGTCCTCCAGGGCTTCGCACGGTT
CGCGGCAGCAAGCGACCATCTTCAAGCGGTCTTTCTGTGACCGGTGACTT
GTATCTGCATGATCTGAGCGTGAACGTGGCTGCCTTTGCGGCGAAAAAGA
TCGACTCACATCCGTCCCCGGTATGGCATCTGAACGAGGAAGGCCTCGCC
GTGTCCAAGTCCAAAGGAGGGATGGACAACTTGAGCACAGCCATAACGTT
GGTCGTTCCTACCACCACCAGCAGCAGCAGCTGCGGCAAAATTTACAAAT
GCATTGACAGCGACGACAACCACAACAGTTACAGTCCGAGTGCGACCAGT
AATGCCAGGTACAAGAACGACAGGGAAGCGGCCGGTAACGGAATACGGGT
AGGCGTACCACCAGTCCTGATCCAGCCTCAGATAGATCAACCTTTGTTTA
GGCGCCTGCCACCATCCACGCTGCTAGGCACGACTTCCACGACCACCAAG
AACCAACTCCAGAACCAATCCCTGGACAAAAATTTTAACCTGGCCGCCGA
CGACTCCTCCACTGCTCTTGCCTTGCCGGCATCGACAATCTCCTCCTCTT
CCTCCTCTTTCTCCCGGACCAGCACTCCTCCCAAACCAATAACCAGCCCC
CGCGAACGGGCGCAAGTCTGCTCTCTTCCCTCTTCCCCTTACTTGGCCCC
CGCAATTCTCGATCAGAGCAAAACCACGGGCCAGCGAAAAGCCAAGGAAA
CAGCCCAAGAGGACGACAAGGGCGAGTGTAACCCCCCCCCCCCCCCAACC
ACAGTCACTGCCACCAACATCCTTTACGGCCGCTGGACCAAAGAAGAGGA
CGAGAAGCTCCGGATCGCCATCGCGACTAAAGGGGCGCACTCTTGGAAAG
TTATTTCCGAAGAGTTCCTCGATGGGAAACGCTCCGATGTGCAATGCCTC
CATCGTTGGAATAAAGTCCTCCATCCCGGCTTGGTCAAAGGCCCGTGGAC
AAGGGAAGAAGACGCCATCATCATGTCCTGTGTCCAGAACGGAATCATGA
AATGGTCGGAAGTCGCCGAGAAGGTCCCGGGGAGGATAGGGAAGCAATGT
CGTGAGAGGTGGTATAATCACCTGAACCCGGCCTTGAAGAAGGGGGGGTG
GACCGAGGAAGAGGACGGGTTGTTGTTGGCAGCACAGAGAAAATGGGGCA
ATGCTTGGACGAAGATTGCAAAGGAGGTCCCAGGAAGGTCGGAGAATGCG
GTGAAGAACAGGTGA

protein sequence of jgi.p|Nanoce1779_2|651629

>mRNA_6617-protein ID=mRNA_6617-protein|Name=jgi.p|Nanoce1779_2|651629|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MDPHPDTEANLTAAPTSDQGSTSSSSSVGKAPSPLPPIGPPGLRTVRGSK
RPSSSGLSVTGDLYLHDLSVNVAAFAAKKIDSHPSPVWHLNEEGLAVSKS
KGGMDNLSTAITLVVPTTTSSSSCGKIYKCIDSDDNHNSYSPSATSNARY
KNDREAAGNGIRVGVPPVLIQPQIDQPLFRRLPPSTLLGTTSTTTKNQLQ
NQSLDKNFNLAADDSSTALALPASTISSSSSSFSRTSTPPKPITSPRERA
QVCSLPSSPYLAPAILDQSKTTGQRKAKETAQEDDKGECNPPPPPTTVTA
TNILYGRWTKEEDEKLRIAIATKGAHSWKVISEEFLDGKRSDVQCLHRWN
KVLHPGLVKGPWTREEDAIIMSCVQNGIMKWSEVAEKVPGRIGKQCRERW
YNHLNPALKKGGWTEEEDGLLLAAQRKWGNAWTKIAKEVPGRSENAVKNR
*

mRNA from alignment at scaffold_18:289879..291545+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6617 ID=mRNA_6617|Name=jgi.p|Nanoce1779_2|651629|organism=Nannochloropsis oceanica|type=mRNA|length=1667bp|location=Sequence derived from alignment at scaffold_18:289879..291545+ (Nannochloropsis oceanica)
ATGCGATAGTTCCGATATAAATCCGTACCCATCGCAGGTGTGGTTGTCTG
GGTCTTTTGGGCACATCACGCACGGAATCAAATGTGCTGCTCCATCGCCC
AGCATTGAGACAAGGACACATAAGGCCACTCGCATCCACCCCTCATCGGG
CAAATTTATCGGAAGGCCAGTCCGACGTGCGAAAAGTATTCTGTGTCGTA
CAAGCCCTCTCGATGGACCCTCATCCCGACACCGAGGCTAACCTGACTGC
GGCTCCCACCTCAGACCAAGGCAGCACCTCTTCCTCCTCATCGGTGGGGA
AGGCACCATCCCCCCTGCCACCAATCGGTCCTCCAGGGCTTCGCACGGTT
CGCGGCAGCAAGCGACCATCTTCAAGCGGTCTTTCTGTGACCGGTGACTT
GTATCTGCATGATCTGAGCGTGAACGTGGCTGCCTTTGCGGCGAAAAAGG
TGAGTCCTCGATCAAGTAGAAGACGGCAAACAACCTTCTTTCTCTGGCCA
AAATTACCGGAGAACACACGCTTACTCCTCTTTCCTGTTCTCATTTATTA
GATCGACTCACATCCGTCCCCGGTATGGCATCTGAACGAGGAAGGCCTCG
CCGTGTCCAAGTCCAAAGGAGGGATGGACAACTTGAGCACAGCCATAACG
TTGGTCGTTCCTACCACCACCAGCAGCAGCAGCTGCGGCAAAATTTACAA
ATGCATTGACAGCGACGACAACCACAACAGTTACAGTCCGAGTGCGACCA
GTAATGCCAGGTACAAGAACGACAGGGAAGCGGCCGGTAACGGAATACGG
GTAGGCGTACCACCAGTCCTGATCCAGCCTCAGATAGATCAACCTTTGTT
TAGGCGCCTGCCACCATCCACGCTGCTAGGCACGACTTCCACGACCACCA
AGAACCAACTCCAGAACCAATCCCTGGACAAAAATTTTAACCTGGCCGCC
GACGACTCCTCCACTGCTCTTGCCTTGCCGGCATCGACAATCTCCTCCTC
TTCCTCCTCTTTCTCCCGGACCAGCACTCCTCCCAAACCAATAACCAGCC
CCCGCGAACGGGCGCAAGTCTGCTCTCTTCCCTCTTCCCCTTACTTGGCC
CCCGCAATTCTCGATCAGAGCAAAACCACGGGCCAGCGAAAAGCCAAGGA
AACAGCCCAAGAGGACGACAAGGGCGAGTGTAACCCCCCCCCCCCCCCAA
CCACAGTCACTGCCACCAACATCCTTTACGGCCGCTGGACCAAAGAAGAG
GACGAGAAGCTCCGGATCGCCATCGCGACTAAAGGGGCGCACTCTTGGAA
AGTTATTTCCGAAGAGTTCCTCGATGGGAAACGCTCCGATGTGCAATGCC
TCCATCGTTGGAATAAAGTCCTCCATCCCGGCTTGGTCAAAGGCCCGTGG
ACAAGGGAAGAAGACGCCATCATCATGTCCTGTGTCCAGAACGGAATCAT
GAAATGGTCGGAAGTCGCCGAGAAGGTCCCGGGGAGGATAGGGAAGCAAT
GTCGTGAGAGGTGGTATAATCACCTGAACCCGGCCTTGAAGAAGGGGGGG
TGGACCGAGGAAGAGGACGGGTTGTTGTTGGCAGCACAGAGAAAATGGGG
CAATGCTTGGACGAAGATTGCAAAGGAGGTCCCAGGAAGGTCGGAGAATG
CGGTGAAGAACAGGTGA

Coding sequence (CDS) from alignment at scaffold_18:289879..291545+

>mRNA_6617 ID=mRNA_6617|Name=jgi.p|Nanoce1779_2|651629|organism=Nannochloropsis oceanica|type=CDS|length=2706bp|location=Sequence derived from alignment at scaffold_18:289879..291545+ (Nannochloropsis oceanica)
ATGGACCCTCATCCCGACACCGAGGCTAACCTGACTGCGGCTCCCACCTC
AGACCAAGGCAGCACCTCTTCCTCCTCATCGGTGGGGAAGGCACCATCCC
CCCTGCCACCAATCGGTCCTCCAGGGCTTCGCACGGTTCGCGGCAGCAAG
CGACCATCTTCAAGCGGTCTTTCTGTGACCGGTGACTTGTATCTGCATGA
TCTGAGCGTGAACGTGGCTGCCTTTGCGGCGAAAAAGATCGACTCACATC
CGTCCCCGGTATGGCATCTGAACGAGGAAGGCCTCGCCGTGTCCAAGTCC
AAAGGAGGGATGGACAACTTGAGCACAGCCATAACGTTGGTCGTTCCTAC
CACCACCAGCAGCAGCAGCTGCGGCAAAATTTACAAATGCATTGACAGCG
ACGACAACCACAACAGTTACAGTCCGAGTGCGACCAGTAATGCCAGGTAC
AAGAACGACAGGGAAGCGGCCGGTAACGGAATACGGGTAGGCGTACCACC
AGTCCTGATCCAGCCTCAGATAGATCAACCTTTGTTTAGGCGCCTGCCAC
CATCCACGCTGCTAGGCACGACTTCCACGACCACCAAGAACCAACTCCAG
AACCAATCCCTGGACAAAAATTTTAACCTGGCCGCCGACGACTCCTCCAC
TGCTCTTGCCTTGCCGGCATCGACAATCTCCTCCTCTTCCTCCTCTTTCT
CCCGGACCAGCACTCCTCCCAAACCAATAACCAGCCCCCGCGAACGGGCG
CAAGTCTGCTCTCTTCCCTCTTCCCCTTACTTGGCCCCCGCAATTCTCGA
TCAGAGCAAAACCACGGGCCAGCGAAAAGCCAAGGAAACAGCCCAAGAGG
ACGACAAGGGCGAGTGTAACCCCCCCCCCCCCCCAACCACAGTCACTGCC
ACCAACATCCTTTACGGCCGCTGGACCAAAGAAGAGGACGAGAAGCTCCG
GATCGCCATCGCGACTAAAGGGGCGCACTCTTGGAAAGTTATTTCCGAAG
AGTTCCTCGATGGGAAACGCTCCGATGTGCAATGCCTCCATCGTTGGAAT
AAAGTCCTCCATCCCGGCTTGGTCAAAGGCCCGTGGACAAGGGAAGAAGA
CGCCATCATCATGTCCTGTGTCCAGAACGGAATCATGAAATGGTCGGAAG
TCGCCGAGAAGGTCCCGGGGAGGATAGGGAAGCAATGTCGTGAGAGGTGG
TATAATCACCTGAACCCGGCCTTGAAGAAGGGGGGGTGGACCGAGGAAGA
GGACGGGTTGTTGTTGGCAGCACAGAGAAAATGGGGCAATGCTTGGACGA
AGATTGCAAAGGAGGTCCCAGGAAGGTCGGAGAATGCGGTGAAGAACAGG
TGAATGGACCCTCATCCCGACACCGAGGCTAACCTGACTGCGGCTCCCAC
CTCAGACCAAGGCAGCACCTCTTCCTCCTCATCGGTGGGGAAGGCACCAT
CCCCCCTGCCACCAATCGGTCCTCCAGGGCTTCGCACGGTTCGCGGCAGC
AAGCGACCATCTTCAAGCGGTCTTTCTGTGACCGGTGACTTGTATCTGCA
TGATCTGAGCGTGAACGTGGCTGCCTTTGCGGCGAAAAAGATCGACTCAC
ATCCGTCCCCGGTATGGCATCTGAACGAGGAAGGCCTCGCCGTGTCCAAG
TCCAAAGGAGGGATGGACAACTTGAGCACAGCCATAACGTTGGTCGTTCC
TACCACCACCAGCAGCAGCAGCTGCGGCAAAATTTACAAATGCATTGACA
GCGACGACAACCACAACAGTTACAGTCCGAGTGCGACCAGTAATGCCAGG
TACAAGAACGACAGGGAAGCGGCCGGTAACGGAATACGGGTAGGCGTACC
ACCAGTCCTGATCCAGCCTCAGATAGATCAACCTTTGTTTAGGCGCCTGC
CACCATCCACGCTGCTAGGCACGACTTCCACGACCACCAAGAACCAACTC
CAGAACCAATCCCTGGACAAAAATTTTAACCTGGCCGCCGACGACTCCTC
CACTGCTCTTGCCTTGCCGGCATCGACAATCTCCTCCTCTTCCTCCTCTT
TCTCCCGGACCAGCACTCCTCCCAAACCAATAACCAGCCCCCGCGAACGG
GCGCAAGTCTGCTCTCTTCCCTCTTCCCCTTACTTGGCCCCCGCAATTCT
CGATCAGAGCAAAACCACGGGCCAGCGAAAAGCCAAGGAAACAGCCCAAG
AGGACGACAAGGGCGAGTGTAACCCCCCCCCCCCCCCAACCACAGTCACT
GCCACCAACATCCTTTACGGCCGCTGGACCAAAGAAGAGGACGAGAAGCT
CCGGATCGCCATCGCGACTAAAGGGGCGCACTCTTGGAAAGTTATTTCCG
AAGAGTTCCTCGATGGGAAACGCTCCGATGTGCAATGCCTCCATCGTTGG
AATAAAGTCCTCCATCCCGGCTTGGTCAAAGGCCCGTGGACAAGGGAAGA
AGACGCCATCATCATGTCCTGTGTCCAGAACGGAATCATGAAATGGTCGG
AAGTCGCCGAGAAGGTCCCGGGGAGGATAGGGAAGCAATGTCGTGAGAGG
TGGTATAATCACCTGAACCCGGCCTTGAAGAAGGGGGGGTGGACCGAGGA
AGAGGACGGGTTGTTGTTGGCAGCACAGAGAAAATGGGGCAATGCTTGGA
CGAAGATTGCAAAGGAGGTCCCAGGAAGGTCGGAGAATGCGGTGAAGAAC
AGGTGA

Synonyms

Publications