jgi.p|Nanoce1779_2|597488, mRNA_6615 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597488
Unique NamemRNA_6615
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1178
Alignment locationscaffold_18:284590..286044 -

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Properties
Property NameValue
TranscriptId597574
TrackFilteredModels2
ProteinId597488
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:284590..286044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597488gene_6615Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597488mRNA_6615-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6615CDS_6615Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6615 ID=mRNA_6615|Name=jgi.p|Nanoce1779_2|597488|organism=Nannochloropsis oceanica|type=mRNA|length=1178bp
AACAGATTTCACATTAATCTGCTATCAGCGCCTCAACCAAACCAGTCCTC
ATCCACCCCTCAAGCTACACGTCATCGCCAACCCCGGGCTTGCATCAGCC
TAATTTGCCATGGCCCTGCCCCATGCGCTGTCTGTTTTCCAAAGAGGGAT
GGAAAGTCAAGCGATAAGACGCCACTACATGGTCATCGTGCTTGGCGGCA
CCGACAACCGAATGCCTCCTCGTCTCAGCCCGAGGCATCTCATGACGGAG
CCGGCCCGTGTTCGGCCCAGCAGCCTCACTACCACCGCAGCAACACGCAT
CATGAGCGCCAAGTTCGCTGACGCCAGTCACGCCTCTTCCCTCCATGCCC
TTGTCATTCACGCACCACGTTCCTGCTTCTCCACCAGCACCAGCACCAGT
ACCAGCACAAGTACCACCGTCCCCTCAAACCCAACCCTTACTCCCCACGC
GCCGCCCGTATTTGATTGGGTCGCTTTGGACGAAGAGAAAAAGATTTGGA
GCGATTATGACAATAATTATGAGGCTGCGCTTGTGCAAGACCTGAGGAGT
AACCATGCGGGTGAGACAGGTGCGGTCTGGATCTATGCTGGTGCCAAGGC
TGCTATGAAATTAGGTTCTCCCTCTCGCTTCTCTCCGGGGGCCCGCGCCT
TCGTGGCCGAGCACTACGCCACCGAAGCTGAGCACCTTGCACATTTCGAC
CGTCTGCTGGACATGCAAATGAAATCAAAGTTACTACCTCTCTGGAGAGT
TAGTGGATGGTGTCTGGGATTTTTTCCCACGCTGGTAGGAGGGGAGCCAG
CCCTCTTTCTGACGGTTGAAGCAGTGGAAACCTTTGTGGAGGAGCATTAC
ATGGAGCAAATCTTTCCCTTGGAATGCAGCGGTCGATACCCAGAGCTTTT
GAAATTATTGAGGCATTGCTGTGAGGAGGAGGTGCATCACAAGGAGGACG
CAGCGGCAAGGTGGATTTCAGGGGGAGGGGGAGGAAAGGGGGGAGCAAGG
CCCTGGTATGTACGAGTTTGGGCGAAACTGGTTGGGTGGGGGAGTAAGGG
CGCGGTGGCGGTGTGTAAAAGAATATGAATATCTAGGCCAATAGATGGGC
GGGTAAATTGAGCATGTGGCAGCGTGGTAGAGATTGGCTGATTGTAGAAA
GATACGAAAGAATGAATCACGGTGTGAC
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protein sequence of jgi.p|Nanoce1779_2|597488

>mRNA_6615-protein ID=mRNA_6615-protein|Name=jgi.p|Nanoce1779_2|597488|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MALPHALSVFQRGMESQAIRRHYMVIVLGGTDNRMPPRLSPRHLMTEPAR
VRPSSLTTTAATRIMSAKFADASHASSLHALVIHAPRSCFSTSTSTSTST
STTVPSNPTLTPHAPPVFDWVALDEEKKIWSDYDNNYEAALVQDLRSNHA
GETGAVWIYAGAKAAMKLGSPSRFSPGARAFVAEHYATEAEHLAHFDRLL
DMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHYMEQ
IFPLECSGRYPELLKLLRHCCEEEVHHKEDAAARWISGGGGGKGGARPWY
VRVWAKLVGWGSKGAVAVCKRI*
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mRNA from alignment at scaffold_18:284590..286044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6615 ID=mRNA_6615|Name=jgi.p|Nanoce1779_2|597488|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp|location=Sequence derived from alignment at scaffold_18:284590..286044- (Nannochloropsis oceanica)
AACAGATTTCACATTAATCTGCTATCAGCGCCTCAACCAAACCAGTCCTC
ATCCACCCCTCAAGCTACACGTCATCGCCAACCCCGGGCTTGCATCAGCC
TAATTTGCCATGGCCCTGCCCCATGCGCTGTCTGTTTTCCAAAGAGGGAT
GGAAAGTCAAGCGATAAGACGCCACTACATGGTCATCGTGCTTGGCGGCA
CCGACAACCGAATGCCTCCTCGTCTCAGCCCGAGGCATCTCATGACGGAG
CCGGCCCGTGTTCGGCCCAGCAGCCTCACTACCACCGCAGCAACACGCAT
CATGAGCGCCAAGTTCGCTGACGCCAGTCACGCCTCTTCCCTCCATGCCC
TTGTCATTCACGCACCACGTTCCTGCTTCTCCACCAGCACCAGCACCAGT
ACCAGCACAAGTACCACCGTCCCCTCAAACCCAACCCTTACTCCCCACGC
GCCGCCCGTATTTGATTGGGTCGCTTTGGACGAAGAGAAAAAGATTTGGA
GCGATTATGACAATAATTATGAGGCTGCGCTTGTGCAAGACCTGAGGAGT
AACCATGCGGGTGAGACAGGTGCGGTCTGGATCTATGCTGGTGCCAAGGT
ATGTATCTTACACATGAGAGAAGACAGTATCACTTTTTTACGGAGGGAAT
GAAGCCAATTTGCGTGCCTATTTTTTGCATTCTCTTTATTTTCCTTTTTC
TCTAATCCATAAACATTCTCTCTCTCTTTCTTTCTCACGCACGACCCACC
CACCCACATAGGCTGCTATGAAATTAGGTTCTCCCTCTCGCTTCTCTCCG
GGGGCCCGCGCCTTCGTGGCCGAGCACTACGCCACCGAAGCTGAGCACCT
TGCACATTTCGACCGTCTGCTGGACATGCAAATGAAATCAAAGTTACTAC
CTCTCTGGAGAGTTAGTGGATGGTGTCTGGGATTTTTTCCCACGCTGGTA
GGAGGGGAGCCAGCCCTCTTTCTGACGGTTGAAGCAGTGGAAACCTTTGT
GGAGGAGCATTACATGGTATCAAAGGAGGGAGGAAGGGGCAGAGGGAGGG
AAACGTCACATGAATGCTGCCCATACTGATTGTTGTTCCCTCCTTTTCCT
TCGTTTAAAAAAAAACACATCTATCTATAGGAGCAAATCTTTCCCTTGGA
ATGCAGCGGTCGATACCCAGAGCTTTTGAAATTATTGAGGCATTGCTGTG
AGGAGGAGGTGCATCACAAGGAGGACGCAGCGGCAAGGTGGATTTCAGGG
GGAGGGGGAGGAAAGGGGGGAGCAAGGCCCTGGTATGTACGAGTTTGGGC
GAAACTGGTTGGGTGGGGGAGTAAGGGCGCGGTGGCGGTGTGTAAAAGAA
TATGAATATCTAGGCCAATAGATGGGCGGGTAAATTGAGCATGTGGCAGC
GTGGTAGAGATTGGCTGATTGTAGAAAGATACGAAAGAATGAATCACGGT
GTGAC
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Coding sequence (CDS) from alignment at scaffold_18:284590..286044-

>mRNA_6615 ID=mRNA_6615|Name=jgi.p|Nanoce1779_2|597488|organism=Nannochloropsis oceanica|type=CDS|length=2907bp|location=Sequence derived from alignment at scaffold_18:284590..286044- (Nannochloropsis oceanica)
GAGCAAATCTTTCCCTTGGAATGCAGCGGTCGATACCCAGAGCTTTTGAA
ATTATTGAGGCATTGCTGTGAGGAGGAGGTGCATCACAAGGAGGACGCAG
CGGCAAGGTGGATTTCAGGGGGAGGGGGAGGAAAGGGGGGAGCAAGGCCC
TGGTATGTACGAGTTTGGGCGAAACTGGTTGGGTGGGGGAGTAAGGGCGC
GGTGGCGGTGTGTAAAAGAATATGAGCTGCTATGAAATTAGGTTCTCCCT
CTCGCTTCTCTCCGGGGGCCCGCGCCTTCGTGGCCGAGCACTACGCCACC
GAAGCTGAGCACCTTGCACATTTCGACCGTCTGCTGGACATGCAAATGAA
ATCAAAGTTACTACCTCTCTGGAGAGTTAGTGGATGGTGTCTGGGATTTT
TTCCCACGCTGGTAGGAGGGGAGCCAGCCCTCTTTCTGACGGTTGAAGCA
GTGGAAACCTTTGTGGAGGAGCATTACATGATGGCCCTGCCCCATGCGCT
GTCTGTTTTCCAAAGAGGGATGGAAAGTCAAGCGATAAGACGCCACTACA
TGGTCATCGTGCTTGGCGGCACCGACAACCGAATGCCTCCTCGTCTCAGC
CCGAGGCATCTCATGACGGAGCCGGCCCGTGTTCGGCCCAGCAGCCTCAC
TACCACCGCAGCAACACGCATCATGAGCGCCAAGTTCGCTGACGCCAGTC
ACGCCTCTTCCCTCCATGCCCTTGTCATTCACGCACCACGTTCCTGCTTC
TCCACCAGCACCAGCACCAGTACCAGCACAAGTACCACCGTCCCCTCAAA
CCCAACCCTTACTCCCCACGCGCCGCCCGTATTTGATTGGGTCGCTTTGG
ACGAAGAGAAAAAGATTTGGAGCGATTATGACAATAATTATGAGGCTGCG
CTTGTGCAAGACCTGAGGAGTAACCATGCGGGTGAGACAGGTGCGGTCTG
GATCTATGCTGGTGCCAAGGAGCAAATCTTTCCCTTGGAATGCAGCGGTC
GATACCCAGAGCTTTTGAAATTATTGAGGCATTGCTGTGAGGAGGAGGTG
CATCACAAGGAGGACGCAGCGGCAAGGTGGATTTCAGGGGGAGGGGGAGG
AAAGGGGGGAGCAAGGCCCTGGTATGTACGAGTTTGGGCGAAACTGGTTG
GGTGGGGGAGTAAGGGCGCGGTGGCGGTGTGTAAAAGAATATGAGCTGCT
ATGAAATTAGGTTCTCCCTCTCGCTTCTCTCCGGGGGCCCGCGCCTTCGT
GGCCGAGCACTACGCCACCGAAGCTGAGCACCTTGCACATTTCGACCGTC
TGCTGGACATGCAAATGAAATCAAAGTTACTACCTCTCTGGAGAGTTAGT
GGATGGTGTCTGGGATTTTTTCCCACGCTGGTAGGAGGGGAGCCAGCCCT
CTTTCTGACGGTTGAAGCAGTGGAAACCTTTGTGGAGGAGCATTACATGA
TGGCCCTGCCCCATGCGCTGTCTGTTTTCCAAAGAGGGATGGAAAGTCAA
GCGATAAGACGCCACTACATGGTCATCGTGCTTGGCGGCACCGACAACCG
AATGCCTCCTCGTCTCAGCCCGAGGCATCTCATGACGGAGCCGGCCCGTG
TTCGGCCCAGCAGCCTCACTACCACCGCAGCAACACGCATCATGAGCGCC
AAGTTCGCTGACGCCAGTCACGCCTCTTCCCTCCATGCCCTTGTCATTCA
CGCACCACGTTCCTGCTTCTCCACCAGCACCAGCACCAGTACCAGCACAA
GTACCACCGTCCCCTCAAACCCAACCCTTACTCCCCACGCGCCGCCCGTA
TTTGATTGGGTCGCTTTGGACGAAGAGAAAAAGATTTGGAGCGATTATGA
CAATAATTATGAGGCTGCGCTTGTGCAAGACCTGAGGAGTAACCATGCGG
GTGAGACAGGTGCGGTCTGGATCTATGCTGGTGCCAAGGAGCAAATCTTT
CCCTTGGAATGCAGCGGTCGATACCCAGAGCTTTTGAAATTATTGAGGCA
TTGCTGTGAGGAGGAGGTGCATCACAAGGAGGACGCAGCGGCAAGGTGGA
TTTCAGGGGGAGGGGGAGGAAAGGGGGGAGCAAGGCCCTGGTATGTACGA
GTTTGGGCGAAACTGGTTGGGTGGGGGAGTAAGGGCGCGGTGGCGGTGTG
TAAAAGAATATGAGCTGCTATGAAATTAGGTTCTCCCTCTCGCTTCTCTC
CGGGGGCCCGCGCCTTCGTGGCCGAGCACTACGCCACCGAAGCTGAGCAC
CTTGCACATTTCGACCGTCTGCTGGACATGCAAATGAAATCAAAGTTACT
ACCTCTCTGGAGAGTTAGTGGATGGTGTCTGGGATTTTTTCCCACGCTGG
TAGGAGGGGAGCCAGCCCTCTTTCTGACGGTTGAAGCAGTGGAAACCTTT
GTGGAGGAGCATTACATGATGGCCCTGCCCCATGCGCTGTCTGTTTTCCA
AAGAGGGATGGAAAGTCAAGCGATAAGACGCCACTACATGGTCATCGTGC
TTGGCGGCACCGACAACCGAATGCCTCCTCGTCTCAGCCCGAGGCATCTC
ATGACGGAGCCGGCCCGTGTTCGGCCCAGCAGCCTCACTACCACCGCAGC
AACACGCATCATGAGCGCCAAGTTCGCTGACGCCAGTCACGCCTCTTCCC
TCCATGCCCTTGTCATTCACGCACCACGTTCCTGCTTCTCCACCAGCACC
AGCACCAGTACCAGCACAAGTACCACCGTCCCCTCAAACCCAACCCTTAC
TCCCCACGCGCCGCCCGTATTTGATTGGGTCGCTTTGGACGAAGAGAAAA
AGATTTGGAGCGATTATGACAATAATTATGAGGCTGCGCTTGTGCAAGAC
CTGAGGAGTAACCATGCGGGTGAGACAGGTGCGGTCTGGATCTATGCTGG
TGCCAAG
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Synonyms
Publications