jgi.p|Nanoce1779_2|597485, mRNA_6614 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597485
Unique NamemRNA_6614
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1429
Alignment locationscaffold_18:283118..284546 +

Link to JBrowse

Properties
Property NameValue
TranscriptId597571
TrackFilteredModels2
ProteinId597485
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:283118..284546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597485gene_6614Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597485mRNA_6614-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6614CDS_6614Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6614 ID=mRNA_6614|Name=jgi.p|Nanoce1779_2|597485|organism=Nannochloropsis oceanica|type=mRNA|length=1429bp
CTCCCACACACAAAATACAGCCCGCTAGCACTCCCTCCTACGCGTTCCCC
ATCACAGCTGCATCCTCACTATGTTGTGGGTGGACAAGCACCGGCCGATG
ACCCTGGCCAAACTGGATTACCACGATGACCTGACCCAGCGCTTGCAAGC
CCTCTCCAAGGACGGTGAAATACCCCACCTGCTCTTCTACGGCCCCCCCG
GTGCCGGCAAAAAGACACGCATCATGGCTTTGCTTCGGGAGATTTACGGC
GCCGGCGTGGAGAAGACCAGGCTGGAGCACAAGACGTTCAAGACCCCCAC
CAAACGCACGATTGAGCTAACCATTCTGGCCTCGGCATATCACCAAGAGA
TCAATGCCGCCGAAGCAGGGTCCGGTGACCGGTTTGTGGTCCAAGAAGTG
ATCAAGGAGATCGCCCAGTCCTATAACCCCACGGCGGCCTTAGGATTGGC
AGGAGGACGAGCTTTCAAGGTGGTTGTGTTGACGGAGGTGGACAGGCTGA
GTCGTCAGGCCCAAGCGGCGTTGCGTCGGACAATGGAAAAATACACAGCA
GCGTGCCGCTTGATATTGTGCTGCAACAGCGCCTCGCGTGTCATCGAACC
TGTGCGTTCTCGTTGCCTGGGCGTTCGGGTACCGGCGCCTTCCCATGAGA
TTATCTGCACGATTCTGAACAAAATCTCCAAAAAAGAGGCTTGTGGAACC
CTTCCCGAAGAACTTGCCATGCGCGTTGCTCAGCACTCAGACCGCAACCT
CCGCCGGGCCCTTTTGATGCTTGAGGCGTGCCGGGTGCAACAACATCCGT
TCACGGCTGACCAGGAGGTAAAGGTGGCCGATTGGGAAGAATACATTGGC
AAGCTTGCTACGATGCTGATCGAGGAGCAGAGCCCCCCCCGGTTGGTCTT
GGCGAGGGATATGCTATACGAGTTGCTGACGAATTGCATCCCATCGGATG
TGATTTTGAAGACGTTGTTGAGGGAGTTGTTGCCGAAGCTGGATGATCAG
TTGAAGCATGAGGTGGTGTATTGGGCAGCGTTCTATGAGCACCGGGTTCA
GGTGGGGAGCAAGGAGATTTTCCACTTGGAAGCCTTCGTGGCCAAGTTTA
TGGCCCTGTATAAGGCCTTTGTCATCAACATGTTCGGGTTTTAGGGAGGG
GGAGGGAGAGAGGAGAGAGGGGAAGGGACCGAGGGAAGGGAGGCCTGTAC
AAGGTTCAGGGGATCGGAATGTCTGGGCTGCAGATGTTTGCCTTTTCGGG
GAATTGATGCGAGTTATCCAGTGATGGGGAGAAGACAAATGGAAGGGTAG
GGAGAAAGAGGGAAAAGGGGAAGTCAAAACAAAGTAAATAGTAAGACAAG
AGGCTGCTTGAGGTTAGGTAGAGGAACAAACGAAAGGCAAGAAGGAAAGA
ACCAAGGCAGTAAGAACATGACACGAAAC
back to top

protein sequence of jgi.p|Nanoce1779_2|597485

>mRNA_6614-protein ID=mRNA_6614-protein|Name=jgi.p|Nanoce1779_2|597485|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MLWVDKHRPMTLAKLDYHDDLTQRLQALSKDGEIPHLLFYGPPGAGKKTR
IMALLREIYGAGVEKTRLEHKTFKTPTKRTIELTILASAYHQEINAAEAG
SGDRFVVQEVIKEIAQSYNPTAALGLAGGRAFKVVVLTEVDRLSRQAQAA
LRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGVRVPAPSHEIICTILN
KISKKEACGTLPEELAMRVAQHSDRNLRRALLMLEACRVQQHPFTADQEV
KVADWEEYIGKLATMLIEEQSPPRLVLARDMLYELLTNCIPSDVILKTLL
RELLPKLDDQLKHEVVYWAAFYEHRVQVGSKEIFHLEAFVAKFMALYKAF
VINMFGF*
back to top

mRNA from alignment at scaffold_18:283118..284546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6614 ID=mRNA_6614|Name=jgi.p|Nanoce1779_2|597485|organism=Nannochloropsis oceanica|type=mRNA|length=1429bp|location=Sequence derived from alignment at scaffold_18:283118..284546+ (Nannochloropsis oceanica)
CTCCCACACACAAAATACAGCCCGCTAGCACTCCCTCCTACGCGTTCCCC
ATCACAGCTGCATCCTCACTATGTTGTGGGTGGACAAGCACCGGCCGATG
ACCCTGGCCAAACTGGATTACCACGATGACCTGACCCAGCGCTTGCAAGC
CCTCTCCAAGGACGGTGAAATACCCCACCTGCTCTTCTACGGCCCCCCCG
GTGCCGGCAAAAAGACACGCATCATGGCTTTGCTTCGGGAGATTTACGGC
GCCGGCGTGGAGAAGACCAGGCTGGAGCACAAGACGTTCAAGACCCCCAC
CAAACGCACGATTGAGCTAACCATTCTGGCCTCGGCATATCACCAAGAGA
TCAATGCCGCCGAAGCAGGGTCCGGTGACCGGTTTGTGGTCCAAGAAGTG
ATCAAGGAGATCGCCCAGTCCTATAACCCCACGGCGGCCTTAGGATTGGC
AGGAGGACGAGCTTTCAAGGTGGTTGTGTTGACGGAGGTGGACAGGCTGA
GTCGTCAGGCCCAAGCGGCGTTGCGTCGGACAATGGAAAAATACACAGCA
GCGTGCCGCTTGATATTGTGCTGCAACAGCGCCTCGCGTGTCATCGAACC
TGTGCGTTCTCGTTGCCTGGGCGTTCGGGTACCGGCGCCTTCCCATGAGA
TTATCTGCACGATTCTGAACAAAATCTCCAAAAAAGAGGCTTGTGGAACC
CTTCCCGAAGAACTTGCCATGCGCGTTGCTCAGCACTCAGACCGCAACCT
CCGCCGGGCCCTTTTGATGCTTGAGGCGTGCCGGGTGCAACAACATCCGT
TCACGGCTGACCAGGAGGTAAAGGTGGCCGATTGGGAAGAATACATTGGC
AAGCTTGCTACGATGCTGATCGAGGAGCAGAGCCCCCCCCGGTTGGTCTT
GGCGAGGGATATGCTATACGAGTTGCTGACGAATTGCATCCCATCGGATG
TGATTTTGAAGACGTTGTTGAGGGAGTTGTTGCCGAAGCTGGATGATCAG
TTGAAGCATGAGGTGGTGTATTGGGCAGCGTTCTATGAGCACCGGGTTCA
GGTGGGGAGCAAGGAGATTTTCCACTTGGAAGCCTTCGTGGCCAAGTTTA
TGGCCCTGTATAAGGCCTTTGTCATCAACATGTTCGGGTTTTAGGGAGGG
GGAGGGAGAGAGGAGAGAGGGGAAGGGACCGAGGGAAGGGAGGCCTGTAC
AAGGTTCAGGGGATCGGAATGTCTGGGCTGCAGATGTTTGCCTTTTCGGG
GAATTGATGCGAGTTATCCAGTGATGGGGAGAAGACAAATGGAAGGGTAG
GGAGAAAGAGGGAAAAGGGGAAGTCAAAACAAAGTAAATAGTAAGACAAG
AGGCTGCTTGAGGTTAGGTAGAGGAACAAACGAAAGGCAAGAAGGAAAGA
ACCAAGGCAGTAAGAACATGACACGAAAC
back to top

Coding sequence (CDS) from alignment at scaffold_18:283118..284546+

>mRNA_6614 ID=mRNA_6614|Name=jgi.p|Nanoce1779_2|597485|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_18:283118..284546+ (Nannochloropsis oceanica)
ATGTTGTGGGTGGACAAGCACCGGCCGATGACCCTGGCCAAACTGGATTA
CCACGATGACCTGACCCAGCGCTTGCAAGCCCTCTCCAAGGACGGTGAAA
TACCCCACCTGCTCTTCTACGGCCCCCCCGGTGCCGGCAAAAAGACACGC
ATCATGGCTTTGCTTCGGGAGATTTACGGCGCCGGCGTGGAGAAGACCAG
GCTGGAGCACAAGACGTTCAAGACCCCCACCAAACGCACGATTGAGCTAA
CCATTCTGGCCTCGGCATATCACCAAGAGATCAATGCCGCCGAAGCAGGG
TCCGGTGACCGGTTTGTGGTCCAAGAAGTGATCAAGGAGATCGCCCAGTC
CTATAACCCCACGGCGGCCTTAGGATTGGCAGGAGGACGAGCTTTCAAGG
TGGTTGTGTTGACGGAGGTGGACAGGCTGAGTCGTCAGGCCCAAGCGGCG
TTGCGTCGGACAATGGAAAAATACACAGCAGCGTGCCGCTTGATATTGTG
CTGCAACAGCGCCTCGCGTGTCATCGAACCTGTGCGTTCTCGTTGCCTGG
GCGTTCGGGTACCGGCGCCTTCCCATGAGATTATCTGCACGATTCTGAAC
AAAATCTCCAAAAAAGAGGCTTGTGGAACCCTTCCCGAAGAACTTGCCAT
GCGCGTTGCTCAGCACTCAGACCGCAACCTCCGCCGGGCCCTTTTGATGC
TTGAGGCGTGCCGGGTGCAACAACATCCGTTCACGGCTGACCAGGAGGTA
AAGGTGGCCGATTGGGAAGAATACATTGGCAAGCTTGCTACGATGCTGAT
CGAGGAGCAGAGCCCCCCCCGGTTGGTCTTGGCGAGGGATATGCTATACG
AGTTGCTGACGAATTGCATCCCATCGGATGTGATTTTGAAGACGTTGTTG
AGGGAGTTGTTGCCGAAGCTGGATGATCAGTTGAAGCATGAGGTGGTGTA
TTGGGCAGCGTTCTATGAGCACCGGGTTCAGGTGGGGAGCAAGGAGATTT
TCCACTTGGAAGCCTTCGTGGCCAAGTTTATGGCCCTGTATAAGGCCTTT
GTCATCAACATGTTCGGGTTTTAG
back to top
Synonyms
Publications