jgi.p|Nanoce1779_2|597484, mRNA_6613 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597484
Unique NamemRNA_6613
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length842
Alignment locationscaffold_18:281807..282648 -

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Properties
Property NameValue
TranscriptId597570
TrackFilteredModels2
ProteinId597484
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:281807..282648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597484gene_6613Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597484mRNA_6613-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6613CDS_6613Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6613 ID=mRNA_6613|Name=jgi.p|Nanoce1779_2|597484|organism=Nannochloropsis oceanica|type=mRNA|length=842bp
ATTGATACCCAAGAAGCATGCATTCTTGTGGCAAAGTGTAATTGGTTTCA
GTCTCGGTCAGCTTCTCGTTGTCATTCACTTCCTTTGTCTTTGGTTTTGT
TTCGGATGAAGTTTTGTTCTAATTGCTGTTATCCTACTTTCGTGCTACTT
TATACACCCTCAGTGCCACTGGGGCAGAGAATTATAATTTCTTCGTTTTC
TTCCCCCAAGTGGGCTAGTGCAGCACACTTACCTTCTCTCTTTCTTTCTA
CCCTTTTTACACTTAATATGCTCACCATCTTTCGCAATCTTTACCTCCTT
GTCGATCAGCCTTCTTGCACGCTGCTGGCAAAGGACTGCTGTGGTCTTTG
TTTGATTATCCTATCCTCCGTCTCATCTCCTCATGACTTTATCTTGCAGC
CAGTCATTCCCTCCCCATCCCTCGCTCATACTTCAGTAATCCCCCCAGGG
TTTTTTCCCTGTCTCCTCGTCCTTTATTTCTATGCACACTGAGACATCAC
TGGAAAATCCTTCCTAGTCTAAAATCTGCCTCCCATTTCACCCATCGAGC
CTGGTGGTAGCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGGTGGTGGTTT
AGGTGTGGTGGTGGCGCCGTGGAAATAGGCATGCCAAGTGATGGATGCTG
ATGATGGTGGCTGTGGTGAGATTGATGTTGTGCTTGGGCGCCATAAATGT
GCGCATTCATCATTGGCTGCAGTTGGATTTGCTGCTGGATCTGCTGTTGC
TGCTGTTGTTGATGATGGTGGTGATGATGGTGATTATGGAACTGCTGCTG
CTGATGATGGAACTGCTGATGATGATGGTGGACCCCCCCCCC
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protein sequence of jgi.p|Nanoce1779_2|597484

>mRNA_6613-protein ID=mRNA_6613-protein|Name=jgi.p|Nanoce1779_2|597484|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MKFCSNCCYPTFVLLYTPSVPLGQRIIISSFSSPKWASAAHLPSLFLSTL
FTLNMLTIFRNLYLLVDQPSCTLLAKDCCGLCLIILSSVSSPHDFILQPV
IPSPSLAHTSVIPPGFFPCLLVLYFYAH*
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mRNA from alignment at scaffold_18:281807..282648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6613 ID=mRNA_6613|Name=jgi.p|Nanoce1779_2|597484|organism=Nannochloropsis oceanica|type=mRNA|length=842bp|location=Sequence derived from alignment at scaffold_18:281807..282648- (Nannochloropsis oceanica)
ATTGATACCCAAGAAGCATGCATTCTTGTGGCAAAGTGTAATTGGTTTCA
GTCTCGGTCAGCTTCTCGTTGTCATTCACTTCCTTTGTCTTTGGTTTTGT
TTCGGATGAAGTTTTGTTCTAATTGCTGTTATCCTACTTTCGTGCTACTT
TATACACCCTCAGTGCCACTGGGGCAGAGAATTATAATTTCTTCGTTTTC
TTCCCCCAAGTGGGCTAGTGCAGCACACTTACCTTCTCTCTTTCTTTCTA
CCCTTTTTACACTTAATATGCTCACCATCTTTCGCAATCTTTACCTCCTT
GTCGATCAGCCTTCTTGCACGCTGCTGGCAAAGGACTGCTGTGGTCTTTG
TTTGATTATCCTATCCTCCGTCTCATCTCCTCATGACTTTATCTTGCAGC
CAGTCATTCCCTCCCCATCCCTCGCTCATACTTCAGTAATCCCCCCAGGG
TTTTTTCCCTGTCTCCTCGTCCTTTATTTCTATGCACACTGAGACATCAC
TGGAAAATCCTTCCTAGTCTAAAATCTGCCTCCCATTTCACCCATCGAGC
CTGGTGGTAGCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGGTGGTGGTTT
AGGTGTGGTGGTGGCGCCGTGGAAATAGGCATGCCAAGTGATGGATGCTG
ATGATGGTGGCTGTGGTGAGATTGATGTTGTGCTTGGGCGCCATAAATGT
GCGCATTCATCATTGGCTGCAGTTGGATTTGCTGCTGGATCTGCTGTTGC
TGCTGTTGTTGATGATGGTGGTGATGATGGTGATTATGGAACTGCTGCTG
CTGATGATGGAACTGCTGATGATGATGGTGGACCCCCCCCCC
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Coding sequence (CDS) from alignment at scaffold_18:281807..282648-

>mRNA_6613 ID=mRNA_6613|Name=jgi.p|Nanoce1779_2|597484|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_18:281807..282648- (Nannochloropsis oceanica)
ATGAAGTTTTGTTCTAATTGCTGTTATCCTACTTTCGTGCTACTTTATAC
ACCCTCAGTGCCACTGGGGCAGAGAATTATAATTTCTTCGTTTTCTTCCC
CCAAGTGGGCTAGTGCAGCACACTTACCTTCTCTCTTTCTTTCTACCCTT
TTTACACTTAATATGCTCACCATCTTTCGCAATCTTTACCTCCTTGTCGA
TCAGCCTTCTTGCACGCTGCTGGCAAAGGACTGCTGTGGTCTTTGTTTGA
TTATCCTATCCTCCGTCTCATCTCCTCATGACTTTATCTTGCAGCCAGTC
ATTCCCTCCCCATCCCTCGCTCATACTTCAGTAATCCCCCCAGGGTTTTT
TCCCTGTCTCCTCGTCCTTTATTTCTATGCACACTGA
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Synonyms
Publications