jgi.p|Nanoce1779_2|122923, mRNA_6612 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|122923
Unique NamemRNA_6612
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1501
Alignment locationscaffold_18:280142..282011 +

Link to JBrowse

Properties
Property NameValue
TranscriptId123009
TrackFilteredModels2
ProteinId122923
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:280142..282011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|122923gene_6612Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|122923mRNA_6612-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6612CDS_6612Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6612 ID=mRNA_6612|Name=jgi.p|Nanoce1779_2|122923|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp
ATTGCACTTGTTCAGTGCTACTGTGTGCACTAGGGCATTTGGACGGGGTC
GTATGACGCGGCGAAGTGGTCGCCATTGCCGCGTCGACCTCCCCTCTTAT
CCATGCAAGTTTGCTCTCATCATCTCCTCGGCTTCCTGTCCAGCTGGGAT
GCGTTTGCCTCCAAGGACAATTGACGGCGTCCTCAAGCCCCTGGTTGGAT
TCCGGGTCGCCGGTCCTCGTCGATTCTTCCTTGCCCGGTGACGCCCGCTC
TTCCTCCAGTCACACACATCCGCCTCCGCAACCGAGCGCTAATACTTCAC
CAATTAAAAAGAAGAGCCTCGGCAGCAAACACCCCTGACACGCCTCAATG
GAGCGGTACCAGAAATTGGAAAAGATAGGGGAAGGCACATACGGGGTGGT
GTACAAGGCCAAGGACCGGGTGACCAATGAGGTCGTCGCTTTGAAAAAGA
TCCGCCTGGAAGCCGAAGACGAAGGCATTCCTTCCACGGCCATCCGGGAG
ATTTCCCTGCTCAAAGAGCTACAACACCCCAATATCGTACGCTTATACGA
CGTAGTTCACACAGAGCGCAAGCTTACATTGGTATTCGAATTTCTCGACC
AAGACCTGAAAAAATACCTAGACATATGCGACAATGGCCTCGAGCTCGCC
GTCCTTCAGTCCTTCCTCTACCAGCTCCTCCACGGCGTCGCCTACTGCCA
CGACCACCGCGTGCTCCATCGGGATTTGAAACCTCAAAATCTTCTCATCA
ATCGCGACGGTGAATTAAAGCTGGCTGATTTTGGCTTGGCTCGTGCGTTC
GGCATCCCTGTCCGAAGCTACACCCACGAGGTGGTGACGCTCTGGTACCG
TGCCCCCGACGTGTTGATGGGCTCTAGGAAATACAGCACTCCGGTGGATA
TCTGGTCGATTGGCTGCATTTTTGCTGAGATGGCTAACGGACGGCCATTG
TTTGCGGGGGCCTCGGAGAGTGATCAATTGGATAGAATTTTTCGCGCCCT
TGGCACGCCCACCGAGGCCGTCTACCCTGGTATAGTGGAGCTGCCGGAAT
TTCAAAAAGTCAAAGCACAATTTCCACGTTATCAATCCCTGGAGTCCTGG
GCGAGTTTAGTGCCGACGTTACCGCCGTTGGGGATCGATTTGATCAGTAA
GATGTTGACATTTGACCCGTCGAAGAGGATATCAGCGAGAGATGCCTTGG
CCCATGCCTTCTTTGGGGAGATCCATGCGCATGGCCATGTGCATATACAG
CAGGGAATGGGGGTTGGTGGAAGGGGGGGAGAAGAAGGAGGAGGAGGGGG
GGGGGGTCCACCATCATCATCAGCAGTTCCATCATCAGCAGCAGCAGTTC
CATAATCACCATCATCACCACCATCATCAACAACAGCAGCAACAGCAGAT
CCAGCAGCAAATCCAACTGCAGCCAATGATGAATGCGCACATTTATGGCG
CCCAAGCACAACATCAATCTCACCACAGCCACCATCATCAGCATCCATCA
C
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protein sequence of jgi.p|Nanoce1779_2|122923

>mRNA_6612-protein ID=mRNA_6612-protein|Name=jgi.p|Nanoce1779_2|122923|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MERYQKLEKIGEGTYGVVYKAKDRVTNEVVALKKIRLEAEDEGIPSTAIR
EISLLKELQHPNIVRLYDVVHTERKLTLVFEFLDQDLKKYLDICDNGLEL
AVLQSFLYQLLHGVAYCHDHRVLHRDLKPQNLLINRDGELKLADFGLARA
FGIPVRSYTHEVVTLWYRAPDVLMGSRKYSTPVDIWSIGCIFAEMANGRP
LFAGASESDQLDRIFRALGTPTEAVYPGIVELPEFQKVKAQFPRYQSLES
WASLVPTLPPLGIDLISKMLTFDPSKRISARDALAHAFFGEIHAHGHVHI
QQGMGVGGRGGEEGGGGGGGPPSSSAVPSSAAAVP*
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mRNA from alignment at scaffold_18:280142..282011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6612 ID=mRNA_6612|Name=jgi.p|Nanoce1779_2|122923|organism=Nannochloropsis oceanica|type=mRNA|length=1870bp|location=Sequence derived from alignment at scaffold_18:280142..282011+ (Nannochloropsis oceanica)
ATTGCACTTGTTCAGTGCTACTGTGTGCACTAGGGCATTTGGACGGGGTC GTATGACGCGGCGAAGTGGTCGCCATTGCCGCGTCGACCTCCCCTCTTAT CCATGCAAGTTTGCTCTCATCATCTCCTCGGCTTCCTGTCCAGCTGGGAT GCGTTTGCCTCCAAGGACAATTGACGGCGTCCTCAAGTAGACATGTTATG ATGGGTTTGAACATTTTTCATGATCGTGGGATGGCTTGCTGTATCATGGT CTCGATCTAGCACCCTCATCTTCCACAACCACACACACAGGCCCCTGGTT GGATTCCGGGTCGCCGGTCCTCGTCGATTCTTCCTTGCCCGGTGACGCCC GCTCTTCCTCCAGTCACACACATCCGCCTCCGCAACCGAGCGCTAATACT TCACCAATTAAAAAGAAGGTTCACCTCGCCATCCTCACGTGCTATTCTAG ACACAGTTCCACAAAATCAACCTTACGACTATCATTACAAATCATCCCCT CCTCTCGGCCTGGACAAGAGCCTCGGCAGCAAACACCCCTGACACGCCTC AATGGAGCGGTACCAGAAATTGGAAAAGATAGGGGAAGGCACATACGGGG TGGTGTACAAGGCCAAGGACCGGGTGACCAATGAGGTCGTCGCTTTGAAA AAGATCCGCCTGGAAGCCGAAGACGAAGGCATTCCTTCCACGGCCATCCG GGAGATTTCCCTGCTCAAAGAGCTACAACACCCCAATATCGTACGCTTAT ACGACGTAGTTCACACAGAGCGCAAGCTTACATTGGTATTCGAATTTCTC GACCAAGACCTGAAAAAATACCTAGACATATGCGACAATGGCCTCGAGCT CGCCGTCCTTCAGTCCTTCCTCTACCAGCTCCTCCACGGCGTCGCCTACT GCCACGACCACCGCGTGCTCCATCGGGATTTGAAACCTCAAAATCTTCTC ATCAATCGCGACGGTGAATTAAAGCTGGCTGATTTTGGCTTGGCTCGTGC GTTCGGCATCCCTGTCCGAAGCTACACCCACGAGGTGGTGACGCTCTGGT ACCGTGCCCCCGACGTGTTGATGGGCTCTAGGAAATACAGCACTCCGGTG GATATCTGGTCGATTGGCTGCATTTTTGCTGAGATGGCTAACGGACGGCC ATTGTTTGCGGGGGCCTCGGAGAGTGATCAATTGGATAGGTGAGGAGGGA GGAAAGGAGGGAGGGAGGAAGGGAGGAAAGGAGCATTTGCCGACGGTGAT CCACCATCTCTTGAAGATATTCTCGGGTCTTGCAGATCTGATTCCCACAC ACGAATTCCTATTCCTCATTTTTTTGTTCCTTTCCCCTCCCCGTCTTGCA ATAGAATTTTTCGCGCCCTTGGCACGCCCACCGAGGCCGTCTACCCTGGT ATAGTGGAGCTGCCGGAATTTCAAAAAGTCAAAGCACAATTTCCACGTTA TCAATCCCTGGAGTCCTGGGCGAGTTTAGTGCCGACGTTACCGCCGTTGG GGATCGATTTGATCAGTAAGATGTTGACATTTGACCCGTCGAAGAGGATA TCAGCGAGAGATGCCTTGGCCCATGCCTTCTTTGGGGAGATCCATGCGCA TGGCCATGTGCATATACAGCAGGGAATGGGGGTTGGTGGAAGGGGGGGAG AAGAAGGAGGAGGAGGGGGGGGGGGTCCACCATCATCATCAGCAGTTCCA TCATCAGCAGCAGCAGTTCCATAATCACCATCATCACCACCATCATCAAC AACAGCAGCAACAGCAGATCCAGCAGCAAATCCAACTGCAGCCAATGATG AATGCGCACATTTATGGCGCCCAAGCACAACATCAATCTCACCACAGCCA CCATCATCAGCATCCATCAC
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Coding sequence (CDS) from alignment at scaffold_18:280142..282011+

>mRNA_6612 ID=mRNA_6612|Name=jgi.p|Nanoce1779_2|122923|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_18:280142..282011+ (Nannochloropsis oceanica)
ATGGAGCGGTACCAGAAATTGGAAAAGATAGGGGAAGGCACATACGGGGT
GGTGTACAAGGCCAAGGACCGGGTGACCAATGAGGTCGTCGCTTTGAAAA
AGATCCGCCTGGAAGCCGAAGACGAAGGCATTCCTTCCACGGCCATCCGG
GAGATTTCCCTGCTCAAAGAGCTACAACACCCCAATATCGTACGCTTATA
CGACGTAGTTCACACAGAGCGCAAGCTTACATTGGTATTCGAATTTCTCG
ACCAAGACCTGAAAAAATACCTAGACATATGCGACAATGGCCTCGAGCTC
GCCGTCCTTCAGTCCTTCCTCTACCAGCTCCTCCACGGCGTCGCCTACTG
CCACGACCACCGCGTGCTCCATCGGGATTTGAAACCTCAAAATCTTCTCA
TCAATCGCGACGGTGAATTAAAGCTGGCTGATTTTGGCTTGGCTCGTGCG
TTCGGCATCCCTGTCCGAAGCTACACCCACGAGGTGGTGACGCTCTGGTA
CCGTGCCCCCGACGTGTTGATGGGCTCTAGGAAATACAGCACTCCGGTGG
ATATCTGGTCGATTGGCTGCATTTTTGCTGAGATGGCTAACGGACGGCCA
TTGTTTGCGGGGGCCTCGGAGAGTGATCAATTGGATAGAATTTTTCGCGC
CCTTGGCACGCCCACCGAGGCCGTCTACCCTGGTATAGTGGAGCTGCCGG
AATTTCAAAAAGTCAAAGCACAATTTCCACGTTATCAATCCCTGGAGTCC
TGGGCGAGTTTAGTGCCGACGTTACCGCCGTTGGGGATCGATTTGATCAG
TAAGATGTTGACATTTGACCCGTCGAAGAGGATATCAGCGAGAGATGCCT
TGGCCCATGCCTTCTTTGGGGAGATCCATGCGCATGGCCATGTGCATATA
CAGCAGGGAATGGGGGTTGGTGGAAGGGGGGGAGAAGAAGGAGGAGGAGG
GGGGGGGGGTCCACCATCATCATCAGCAGTTCCATCATCAGCAGCAGCAG
TTCCATAAATGGAGCGGTACCAGAAATTGGAAAAGATAGGGGAAGGCACA
TACGGGGTGGTGTACAAGGCCAAGGACCGGGTGACCAATGAGGTCGTCGC
TTTGAAAAAGATCCGCCTGGAAGCCGAAGACGAAGGCATTCCTTCCACGG
CCATCCGGGAGATTTCCCTGCTCAAAGAGCTACAACACCCCAATATCGTA
CGCTTATACGACGTAGTTCACACAGAGCGCAAGCTTACATTGGTATTCGA
ATTTCTCGACCAAGACCTGAAAAAATACCTAGACATATGCGACAATGGCC
TCGAGCTCGCCGTCCTTCAGTCCTTCCTCTACCAGCTCCTCCACGGCGTC
GCCTACTGCCACGACCACCGCGTGCTCCATCGGGATTTGAAACCTCAAAA
TCTTCTCATCAATCGCGACGGTGAATTAAAGCTGGCTGATTTTGGCTTGG
CTCGTGCGTTCGGCATCCCTGTCCGAAGCTACACCCACGAGGTGGTGACG
CTCTGGTACCGTGCCCCCGACGTGTTGATGGGCTCTAGGAAATACAGCAC
TCCGGTGGATATCTGGTCGATTGGCTGCATTTTTGCTGAGATGGCTAACG
GACGGCCATTGTTTGCGGGGGCCTCGGAGAGTGATCAATTGGATAGAATT
TTTCGCGCCCTTGGCACGCCCACCGAGGCCGTCTACCCTGGTATAGTGGA
GCTGCCGGAATTTCAAAAAGTCAAAGCACAATTTCCACGTTATCAATCCC
TGGAGTCCTGGGCGAGTTTAGTGCCGACGTTACCGCCGTTGGGGATCGAT
TTGATCAGTAAGATGTTGACATTTGACCCGTCGAAGAGGATATCAGCGAG
AGATGCCTTGGCCCATGCCTTCTTTGGGGAGATCCATGCGCATGGCCATG
TGCATATACAGCAGGGAATGGGGGTTGGTGGAAGGGGGGGAGAAGAAGGA
GGAGGAGGGGGGGGGGGTCCACCATCATCATCAGCAGTTCCATCATCAGC
AGCAGCAGTTCCATAA
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Synonyms
Publications