Properties
| Property Name | Value |
|---|
| TranscriptId | 623812 |
| Track | FilteredModels2 |
| ProteinId | 623726 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:277349..279742 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6611 ID=mRNA_6611|Name=jgi.p|Nanoce1779_2|623726|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp
ATGAGCCAAGATGACTTCATGCGCAAGGACGAATGCCTAGTGGTGGACGA
ACAAGATCAGCTCACAGGCACAGAAAACAAGTACAACTGCCACCGTTTCA
CTCCCCAGCAACCCCGCGGCAAGCTCCACCGCGCTTTCTCAGTCTTCCTC
TTCGATTTAAAAGGTCGTCTCTTGCTCCAGCAACGGGCCGCGTCGAAGAT
CACCTTTCCCAAGGTCTGGACCAACACCTGCTGCTCCCACCCCCTTAGTG
GTTTCCAACCCTCCGAAATCGATACTCCAGAAGACGTCGCAACCGGCACA
GTTCAAGGCATCAAACGCGCCGCCATTCGCAAGCTCGAGCACGAACTTGG
CATTCCTTCTACACAAGTGCCCATCGAAAAATTCAAGTTTTTAACCCGCC
TTCATTATTGGGCTGCCGACACCATCACCCACGGCCCCACCTCGGAATGG
GGGGAACACGAAATTGACTACGTCCTCTTCCTCCAAGTTCCCTCCACGTC
CTTATCCATCAAGCCGAACCCCGATGAGGTCGATGCCACTCAATTTGTCA
CCTTGCCCGAGCTTCAACGCCTCATGCACCCTTCCTCCGGCCTCCTGTGG
TCTCCCTGGTTCAAGATCATCGCCGAACGCTTCCTCCCCCAATGGTGGGC
CGACCTCTCCACCACCCTCACCACCAATGTCCATTTCGATCCAATTACCA
TCCACAGGTTCGACCCGCCGGTGGAGCACATGGGAGGAGGAGGCAGCGCA
GGCCCTTTCCTTGGCTCCCCTCCTCCTCCTCTCGCTGCTGCTGCCCTCGC
TGCTGCTACCAGCAATGGCAACGGTTATAGGGACAACAGTAAGAAGCAAG
GGGCGTACGGAAAGGTGAAATCGCATTCTGAGAGCGTTTTCTCCCAGCTA
TTGCGCATCGACGAGGTCTTCTGTGCGTTGCGAGTTAAGTTCGCTCATCC
CTTCCCAGAGGTGGATATGGGTCAGAAGAGCAATGAGGATGTCAGGTTTT
GCAATTATATTCTTGGGAAGGTATCCAGATCATTCGCAGCCGTGATCAGG
CAGTTGCCGAAAGGCTTGTGTCTAGAGACAGTGGTTTTTTATTTGGTCTT
ACGGGCCCTCGATACAGTCGAAGATGATATGGAGGCGTTTGTCGCTGATC
CTTCTGTGAAAATACAGCATTTAAGGTCCTTTTATCAGGTGGCTTTGGAA
GACCCTAGCTGGACGATGAAGGGCGTGGGTAAGGGGGATGAGGCACGGTT
GCTGGAGGAGTTTAATCGGGTGGTGAGGGTGTTCAAGAGCCTGGCCCCGG
AGATGCAGGAAGTGATCGGTGATATCACCCGTAGGATGGGGAATGGGATG
GCTGACTTCGTGGACAAAGACCTGGGTCAGGGAACTGTGGGAGTGAAAGA
GTACGATTTGTACTGCCATTATGTCGCCGGGCTGGTTGGGGAGGGGTTGA
CGCGAATGTTCGCGTCGAGTGGCTTCGAGAGTGCGGACTTGGCGACAACA
AGCGAGGAGTTGAGTAACAGCATGGGGCTCTTTTTGCAGAAAACGAATAT
TATTCGCGATTATTTGGAGGATTTTGTGGATGGACGGGCATTTTGGCCCC
AAGAAGTGTGGAAGTTGTACGCCCCTTCCTATCCCGGTACTTCGCCTTCG
CTGGGAGCGTTTGCTGCGCCGGAGAATCGGAAGAAGGGCTTGGCGTGCTT
GGATCATCTGGTGACGAATGCCTTGACGCATGTACCGCATTGTTTGGATT
ATATGAGCCGATTGAAGACCACGGAGATATTCCGTTTTTGTGCCATTCCC
CAGGTGATGGCGATTGCGACCCTGGAGAAGGTTTACCATAACCCGGACGT
GTTTACGGGAGTGGTGAAGATCAGGAAGGGGTTGGCGTGCAAATTGATTT
TGGAAGCGAGTACAATGGGGGAACTCTTTGCGTGCTTTGAGAATTTCGCG
GTGGCATCGTTGGTGGTGACTTTTGGTTTAAGTTACATGGTGGTGAATAT
TTGGGCACCGCAAGAAGGGAAGTGGAAGGAGATGGGAAGGACGGTGGGAA
GATCGAGTGGGGGGAAGAAGTTAAAGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|623726 >mRNA_6611-protein ID=mRNA_6611-protein|Name=jgi.p|Nanoce1779_2|623726|organism=Nannochloropsis oceanica|type=polypeptide|length=693bp
MSQDDFMRKDECLVVDEQDQLTGTENKYNCHRFTPQQPRGKLHRAFSVFL
FDLKGRLLLQQRAASKITFPKVWTNTCCSHPLSGFQPSEIDTPEDVATGT
VQGIKRAAIRKLEHELGIPSTQVPIEKFKFLTRLHYWAADTITHGPTSEW
GEHEIDYVLFLQVPSTSLSIKPNPDEVDATQFVTLPELQRLMHPSSGLLW
SPWFKIIAERFLPQWWADLSTTLTTNVHFDPITIHRFDPPVEHMGGGGSA
GPFLGSPPPPLAAAALAAATSNGNGYRDNSKKQGAYGKVKSHSESVFSQL
LRIDEVFCALRVKFAHPFPEVDMGQKSNEDVRFCNYILGKVSRSFAAVIR
QLPKGLCLETVVFYLVLRALDTVEDDMEAFVADPSVKIQHLRSFYQVALE
DPSWTMKGVGKGDEARLLEEFNRVVRVFKSLAPEMQEVIGDITRRMGNGM
ADFVDKDLGQGTVGVKEYDLYCHYVAGLVGEGLTRMFASSGFESADLATT
SEELSNSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKLYAPSYPGTSPS
LGAFAAPENRKKGLACLDHLVTNALTHVPHCLDYMSRLKTTEIFRFCAIP
QVMAIATLEKVYHNPDVFTGVVKIRKGLACKLILEASTMGELFACFENFA
VASLVVTFGLSYMVVNIWAPQEGKWKEMGRTVGRSSGGKKLK* back to topmRNA from alignment at scaffold_18:277349..279742- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6611 ID=mRNA_6611|Name=jgi.p|Nanoce1779_2|623726|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp|location=Sequence derived from alignment at scaffold_18:277349..279742- (Nannochloropsis oceanica)
ATGAGCCAAGATGACTTCATGCGCAAGGACGAATGCCTAGTGGTGGACGA
ACAAGATCAGCTCACAGGCACAGAAAACAAGTACAACTGCCACCGTTTCA
CTCCCCAGCAACCCCGCGGCAAGCTCCACCGCGCTTTCTCAGTCTTCCTC
TTCGATTTAAAAGGTCGTCTCTTGCTCCAGCAACGGGCCGCGTCGAAGAT
CACCTTTCCCAAGGTCTGGACCAACACCTGCTGCTCCCACCCCCTTAGTG
GTTTCCAACCCTCCGAAATCGATACTCCAGAAGACGTCGCAACCGGCACA
GTTCAAGGCATCAAACGCGCCGCCATTCGCAAGCTCGAGCACGAACTTGG
CATTCCTTCTACACAAGTGCCCATCGAAAAATTCAAGTTTTTAACCCGCC
TTCATTATTGGGCTGCCGACACCATCACCCACGGCCCCACCTCGGAATGG
GGGGAACACGAAATTGACTACGTCCTCTTCCTCCAAGTTCCCTCCACGTC
CTTATCCATCAAGCCGAACCCCGATGAGGTCGATGCCACTCAATTTGTCA
CCTTGCCCGAGCTTCAACGCCTCATGCACCCTTCCTCCGGCCTCCTGTGG
TCTCCCTGGTTCAAGATCATCGCCGAACGCTTCCTCCCCCAATGGTGGGC
CGACCTCTCCACCACCCTCACCACCAATGTCCATTTCGATCCAATTACCA
TCCACAGGTTCGACCCGCCGGTGGAGCACATGGGAGGAGGAGGCAGCGCA
GGCCCTTTCCTTGGCTCCCCTCCTCCTCCTCTCGCTGCTGCTGCCCTCGC
TGCTGCTACCAGCAATGGCAACGGTTATAGGGACAACAGTAAGAAGCAAG
GGGCGTACGGAAAGGTGAAATCGCATTCTGAGAGCGTTTTCTCCCAGCTA
TTGCGCATCGACGAGGTCTTCTGTGCGTTGCGAGTTAAGTTCGCTCATCC
CTTCCCAGAGGTGGATATGGGTCAGAAGAGCAATGAGGATGTCAGGTTTT
GCAATTATATTCTTGGGAAGGTATCCAGATCATTCGCAGCCGTGATCAGG
CAGTTGCCGAAAGGCTTGTGTCTAGAGACAGTGGTTTTTTATTTGGTCTT
ACGGGCCCTCGATACAGTCGAAGATGATATGGAGGCGTTTGTCGCTGATC
CTTCTGTGAAAATACAGCATTTAAGGTCCTTTTATCAGGTGGCTTTGGAA
GACCCTAGCTGGACGATGAAGGGCGTGGGTAAGGGGGATGAGGCACGGTT
GCTGGAGGAGTTTAATCGGGTGGTGAGGGTGTTCAAGAGCCTGGCCCCGG
AGATGCAGGAAGTGATCGGTGATATCACCCGTAGGATGGGGAATGGGATG
GCTGACTTCGTGGACAAAGACCTGGGTCAGGGAACTGTGGGAGTGAAAGA
GTACGATTTGTACTGCCATTATGTCGCCGGGCTGGTTGGGGAGGGGTTGA
CGCGAATGTTCGCGTCGAGTGGCTTCGAGAGTGCGGACTTGGCGACAACA
AGCGAGGAGTTGAGTAACAGCATGGGGCTCTTTTTGCAGAAAACGAATAT
TATTCGCGATTATTTGGAGGATTTTGTGGATGGACGGGCATTTTGGCCCC
AAGAAGTGTGGAAGTTGTACGCCCCTTCCTATCCCGGTACTTCGCCTTCG
CTGGGAGCGTTTGCTGCGCCGGAGAATCGGAAGAAGGGCTTGGCGTGCTT
GGATCATCTGGTGACGAATGCCTTGACGCATGTACCGCATTGTTTGGATT
ATATGAGCCGATTGAAGACCACGGAGATATTCCGTTTTTGTGCCATTCCC
CAGGTGATGGCGATTGCGACCCTGGAGAAGGTTTACCATAACCCGGACGT
GTTTACGGGAGTGGTGAAGATCAGGAAGGGGTTGGCGTGCAAATTGATTT
TGGAAGCGAGTACAATGGGGGAACTCTTTGCGTGCTTTGAGAATTTCGCG
GGTAAAATAGCTGAGAAGGCACGGGCGCAGCAGCAGGAGGACGGAGGGAG
GGAGGGAGGGATGGCGGGAGAGACGGTGAAGTTGTGTGAGGAGATCAAAA
AATTGTGTTCAGGGCAGGGGGGATCGGAGGAGAGGAGGAGGCGGGGATGT
GCGGGAAAGCAGGGGACGTATTTAGCGGTGGTGCTGACAATTGTAATAGT
GCCTCTGCTGGCTTGGTTCGTGAGAGGTGGAGCGGAGGGGGGATTTCTTG
GACGATTGAGCGATGGGCCTGCAGGACTTTTAGGGACTGACTATGTTCGG
ATGGCAATCCTTGTAGTGGCATCGTTGGTGGTGACTTTTGGTTTAAGTTA
CATGGTGGTGAATATTTGGGCACCGCAAGAAGGGAAGTGGAAGGAGATGG
GAAGGACGGTGGGAAGATCGAGTGGGGGGAAGAAGTTAAAGTGA back to topCoding sequence (CDS) from alignment at scaffold_18:277349..279742- >mRNA_6611 ID=mRNA_6611|Name=jgi.p|Nanoce1779_2|623726|organism=Nannochloropsis oceanica|type=CDS|length=4158bp|location=Sequence derived from alignment at scaffold_18:277349..279742- (Nannochloropsis oceanica)
TGGCATCGTTGGTGGTGACTTTTGGTTTAAGTTACATGGTGGTGAATATT
TGGGCACCGCAAGAAGGGAAGTGGAAGGAGATGGGAAGGACGGTGGGAAG
ATCGAGTGGGGGGAAGAAGTTAAAGTGAATGAGCCAAGATGACTTCATGC
GCAAGGACGAATGCCTAGTGGTGGACGAACAAGATCAGCTCACAGGCACA
GAAAACAAGTACAACTGCCACCGTTTCACTCCCCAGCAACCCCGCGGCAA
GCTCCACCGCGCTTTCTCAGTCTTCCTCTTCGATTTAAAAGGTCGTCTCT
TGCTCCAGCAACGGGCCGCGTCGAAGATCACCTTTCCCAAGGTCTGGACC
AACACCTGCTGCTCCCACCCCCTTAGTGGTTTCCAACCCTCCGAAATCGA
TACTCCAGAAGACGTCGCAACCGGCACAGTTCAAGGCATCAAACGCGCCG
CCATTCGCAAGCTCGAGCACGAACTTGGCATTCCTTCTACACAAGTGCCC
ATCGAAAAATTCAAGTTTTTAACCCGCCTTCATTATTGGGCTGCCGACAC
CATCACCCACGGCCCCACCTCGGAATGGGGGGAACACGAAATTGACTACG
TCCTCTTCCTCCAAGTTCCCTCCACGTCCTTATCCATCAAGCCGAACCCC
GATGAGGTCGATGCCACTCAATTTGTCACCTTGCCCGAGCTTCAACGCCT
CATGCACCCTTCCTCCGGCCTCCTGTGGTCTCCCTGGTTCAAGATCATCG
CCGAACGCTTCCTCCCCCAATGGTGGGCCGACCTCTCCACCACCCTCACC
ACCAATGTCCATTTCGATCCAATTACCATCCACAGGTTCGACCCGCCGGT
GGAGCACATGGGAGGAGGAGGCAGCGCAGGCCCTTTCCTTGGCTCCCCTC
CTCCTCCTCTCGCTGCTGCTGCCCTCGCTGCTGCTACCAGCAATGGCAAC
GGTTATAGGGACAACAGTAAGAAGCAAGGGGCGTACGGAAAGGTGAAATC
GCATTCTGAGAGCGTTTTCTCCCAGCTATTGCGCATCGACGAGGTCTTCT
GTGCGTTGCGAGTTAAGTTCGCTCATCCCTTCCCAGAGGTGGATATGGGT
CAGAAGAGCAATGAGGATGTCAGGTTTTGCAATTATATTCTTGGGAAGGT
ATCCAGATCATTCGCAGCCGTGATCAGGCAGTTGCCGAAAGGCTTGTGTC
TAGAGACAGTGGTTTTTTATTTGGTCTTACGGGCCCTCGATACAGTCGAA
GATGATATGGAGGCGTTTGTCGCTGATCCTTCTGTGAAAATACAGCATTT
AAGGTCCTTTTATCAGGTGGCTTTGGAAGACCCTAGCTGGACGATGAAGG
GCGTGGGTAAGGGGGATGAGGCACGGTTGCTGGAGGAGTTTAATCGGGTG
GTGAGGGTGTTCAAGAGCCTGGCCCCGGAGATGCAGGAAGTGATCGGTGA
TATCACCCGTAGGATGGGGAATGGGATGGCTGACTTCGTGGACAAAGACC
TGGGTCAGGGAACTGTGGGAGTGAAAGAGTACGATTTGTACTGCCATTAT
GTCGCCGGGCTGGTTGGGGAGGGGTTGACGCGAATGTTCGCGTCGAGTGG
CTTCGAGAGTGCGGACTTGGCGACAACAAGCGAGGAGTTGAGTAACAGCA
TGGGGCTCTTTTTGCAGAAAACGAATATTATTCGCGATTATTTGGAGGAT
TTTGTGGATGGACGGGCATTTTGGCCCCAAGAAGTGTGGAAGTTGTACGC
CCCTTCCTATCCCGGTACTTCGCCTTCGCTGGGAGCGTTTGCTGCGCCGG
AGAATCGGAAGAAGGGCTTGGCGTGCTTGGATCATCTGGTGACGAATGCC
TTGACGCATGTACCGCATTGTTTGGATTATATGAGCCGATTGAAGACCAC
GGAGATATTCCGTTTTTGTGCCATTCCCCAGGTGATGGCGATTGCGACCC
TGGAGAAGGTTTACCATAACCCGGACGTGTTTACGGGAGTGGTGAAGATC
AGGAAGGGGTTGGCGTGCAAATTGATTTTGGAAGCGAGTACAATGGGGGA
ACTCTTTGCGTGCTTTGAGAATTTCGCGGTGGCATCGTTGGTGGTGACTT
TTGGTTTAAGTTACATGGTGGTGAATATTTGGGCACCGCAAGAAGGGAAG
TGGAAGGAGATGGGAAGGACGGTGGGAAGATCGAGTGGGGGGAAGAAGTT
AAAGTGAATGAGCCAAGATGACTTCATGCGCAAGGACGAATGCCTAGTGG
TGGACGAACAAGATCAGCTCACAGGCACAGAAAACAAGTACAACTGCCAC
CGTTTCACTCCCCAGCAACCCCGCGGCAAGCTCCACCGCGCTTTCTCAGT
CTTCCTCTTCGATTTAAAAGGTCGTCTCTTGCTCCAGCAACGGGCCGCGT
CGAAGATCACCTTTCCCAAGGTCTGGACCAACACCTGCTGCTCCCACCCC
CTTAGTGGTTTCCAACCCTCCGAAATCGATACTCCAGAAGACGTCGCAAC
CGGCACAGTTCAAGGCATCAAACGCGCCGCCATTCGCAAGCTCGAGCACG
AACTTGGCATTCCTTCTACACAAGTGCCCATCGAAAAATTCAAGTTTTTA
ACCCGCCTTCATTATTGGGCTGCCGACACCATCACCCACGGCCCCACCTC
GGAATGGGGGGAACACGAAATTGACTACGTCCTCTTCCTCCAAGTTCCCT
CCACGTCCTTATCCATCAAGCCGAACCCCGATGAGGTCGATGCCACTCAA
TTTGTCACCTTGCCCGAGCTTCAACGCCTCATGCACCCTTCCTCCGGCCT
CCTGTGGTCTCCCTGGTTCAAGATCATCGCCGAACGCTTCCTCCCCCAAT
GGTGGGCCGACCTCTCCACCACCCTCACCACCAATGTCCATTTCGATCCA
ATTACCATCCACAGGTTCGACCCGCCGGTGGAGCACATGGGAGGAGGAGG
CAGCGCAGGCCCTTTCCTTGGCTCCCCTCCTCCTCCTCTCGCTGCTGCTG
CCCTCGCTGCTGCTACCAGCAATGGCAACGGTTATAGGGACAACAGTAAG
AAGCAAGGGGCGTACGGAAAGGTGAAATCGCATTCTGAGAGCGTTTTCTC
CCAGCTATTGCGCATCGACGAGGTCTTCTGTGCGTTGCGAGTTAAGTTCG
CTCATCCCTTCCCAGAGGTGGATATGGGTCAGAAGAGCAATGAGGATGTC
AGGTTTTGCAATTATATTCTTGGGAAGGTATCCAGATCATTCGCAGCCGT
GATCAGGCAGTTGCCGAAAGGCTTGTGTCTAGAGACAGTGGTTTTTTATT
TGGTCTTACGGGCCCTCGATACAGTCGAAGATGATATGGAGGCGTTTGTC
GCTGATCCTTCTGTGAAAATACAGCATTTAAGGTCCTTTTATCAGGTGGC
TTTGGAAGACCCTAGCTGGACGATGAAGGGCGTGGGTAAGGGGGATGAGG
CACGGTTGCTGGAGGAGTTTAATCGGGTGGTGAGGGTGTTCAAGAGCCTG
GCCCCGGAGATGCAGGAAGTGATCGGTGATATCACCCGTAGGATGGGGAA
TGGGATGGCTGACTTCGTGGACAAAGACCTGGGTCAGGGAACTGTGGGAG
TGAAAGAGTACGATTTGTACTGCCATTATGTCGCCGGGCTGGTTGGGGAG
GGGTTGACGCGAATGTTCGCGTCGAGTGGCTTCGAGAGTGCGGACTTGGC
GACAACAAGCGAGGAGTTGAGTAACAGCATGGGGCTCTTTTTGCAGAAAA
CGAATATTATTCGCGATTATTTGGAGGATTTTGTGGATGGACGGGCATTT
TGGCCCCAAGAAGTGTGGAAGTTGTACGCCCCTTCCTATCCCGGTACTTC
GCCTTCGCTGGGAGCGTTTGCTGCGCCGGAGAATCGGAAGAAGGGCTTGG
CGTGCTTGGATCATCTGGTGACGAATGCCTTGACGCATGTACCGCATTGT
TTGGATTATATGAGCCGATTGAAGACCACGGAGATATTCCGTTTTTGTGC
CATTCCCCAGGTGATGGCGATTGCGACCCTGGAGAAGGTTTACCATAACC
CGGACGTGTTTACGGGAGTGGTGAAGATCAGGAAGGGGTTGGCGTGCAAA
TTGATTTTGGAAGCGAGTACAATGGGGGAACTCTTTGCGTGCTTTGAGAA
TTTCGCGG back to top
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