jgi.p|Nanoce1779_2|632032, mRNA_6610 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632032
Unique Name	mRNA_6610
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1784
Alignment location	scaffold_18:274603..276735 -

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Properties


Property Name	Value
TranscriptId	632118
Track	FilteredModels2
ProteinId	632032

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:274603..276735 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632032	gene_6610	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632032	mRNA_6610-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6610	CDS_6610	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:274603..276735-
coding sequence from alignment at scaffold_18:274603..276735-

mRNA sequence

>mRNA_6610 ID=mRNA_6610|Name=jgi.p|Nanoce1779_2|632032|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp
ACAGGCAGGGCTATCGTGATCCAGCCGCCCATGTCGTCAGTCTAGTCAAC
CGCTTTCCCCCTCGAATGATGACGCCTGCCCTTGCCGTCTCTAGGGCCGC
TGCCCGCCGCCGTGCCCTGCTTCTCGAAGCCCGCAAGCAGCGCGAGGCGT
GGATCCAGGATGAAGATTATAAGGAGGTGGGTGTGGTGCAAGCCCTGATG
GAGAAGCAGCAACAACAGCGGCAGCAGCAGGAGCAGCCACCATCACAAAC
GAAGAAGAGGGGCACTCTCACAGGGCTTTTTGAAGGCATTCCAGGCTTAG
AGGGCGTGATGCCCATCGCGCGGGAGTACGTTGGGTTTTTAAACGAGCTC
GCAGGAGAAGGAGACAGGGAAGCGATCGAATTAGTAAGTGATGCCTCGTC
AGCCGCGGAAGGAGACGGAGAGGACGAGGAAGGCGAAGGAGCACAAGGGG
AGGAAGCTCCGCCCTTGCCAGACATAGCTCTCAATGCCTCCGTGTCCTTG
TCGTACGATGATTTCGTACAGCTTTTGGCTCATCCTGGATCAATTGAAGT
GGTGAAATCCATGCAGCGTTTCGTCACTGCCTTTATCCAAAGCCAAGAGC
GACGCGAGGGGTTGTCCGCTCTCCCTCCCTCCTCCCTCTCCACCCCTCGT
CCGCAAGGACAGCATCTGCACGCATTTATCGAAAGTTTGCGATTAGAAAT
GTGCAAGAGTGGGGTGTGGGCGGCACGGCTGGCAATCGAGGAGAAACGCT
CCTCTCCAGGCTCCTCCTCCTTTTCCTCCTCTTCCTCCTCCGCTTGGGAT
GGGTTGAGAGAGCACCTCGAAAAGTTCCTCGTTATCAAACTTTACCGCTA
CCTTTTCACCGAAGCTGAAACCCAGACCCTTAGAGATCAAGAAGCCGCCT
GGCAAGCCCGCCTTGACTCCCTCGCCTTCCTCGGCCCCGAGCACCTCGAA
GTCCGCTCCCTCATCTCCTCCTTGCCCTCCATATCCATCTCCACCTCTCT
AGCTCCCGCCATCGCCGAATTCAGCCTTGTCCCCTCTTACAAAGCCCCCG
TGGATATAATGTCTTGCCTTTTACGTTGCTCTTATCTTCTCTCTCGCGGG
CTCGTTGCAGCTCACCCTCCCGGAACCGGCCTACCAGGTGCGGATGAATT
CCTGCCTGCCATGATTTTAATGATCAAAGAGAGTAAACCTTCCGGCTTGA
GGAAAGCATTGGACATAGTGCAGTGTTACCGCTATCCGCCGCGATTGCAG
GTGTCCGAGCCGGCGTATGTCTTTACGAATGTGCTATCTGCCGTCCATTT
CCTGGAGACAGCGAAGGCGGGTCAGTTGAATATGACGCCTGAGGTGTTCG
AAAGATCCTTGGTAGCGTGTAGCAGGAGTATGGGAAGATGGAGGGAGGGT
GTGTTCGAAACAAGAGCAGGAGCAGGAGGAGGAGGAGGAGGGGTGGTAAC
GGGGGAAGAGGAGGAGGGACATGGGGTGGGAGTGTTGCCTGTTTTGTCTG
CACTTAAGGACATGACGCTTAAAGAGGGTACCTCGCTGTCTTCCTCTTCC
TTCTTGTCTTCCTCCCTCGTTGTCTGTAACGGTCATTACAAGAGCAGCGA
ACCCCATGGGACTTGCGGGTAAGCGATATGTCGGCCCTGCTATCAGAGTA
TAGATGCCTCGCCATAGTTGCTGGCGAATGTCTTAATTTGCTGCAAGAGC
AAAGAAGGTAGGTTGATTTAAACGTAATCTTTAGGTAATGAAAAAGTGAG
AAACGATAAAGTAAAAAAAGCACACGAGACTTTT

protein sequence of jgi.p|Nanoce1779_2|632032

>mRNA_6610-protein ID=mRNA_6610-protein|Name=jgi.p|Nanoce1779_2|632032|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MMTPALAVSRAAARRRALLLEARKQREAWIQDEDYKEVGVVQALMEKQQQ
QRQQQEQPPSQTKKRGTLTGLFEGIPGLEGVMPIAREYVGFLNELAGEGD
REAIELVSDASSAAEGDGEDEEGEGAQGEEAPPLPDIALNASVSLSYDDF
VQLLAHPGSIEVVKSMQRFVTAFIQSQERREGLSALPPSSLSTPRPQGQH
LHAFIESLRLEMCKSGVWAARLAIEEKRSSPGSSSFSSSSSSAWDGLREH
LEKFLVIKLYRYLFTEAETQTLRDQEAAWQARLDSLAFLGPEHLEVRSLI
SSLPSISISTSLAPAIAEFSLVPSYKAPVDIMSCLLRCSYLLSRGLVAAH
PPGTGLPGADEFLPAMILMIKESKPSGLRKALDIVQCYRYPPRLQVSEPA
YVFTNVLSAVHFLETAKAGQLNMTPEVFERSLVACSRSMGRWREGVFETR
AGAGGGGGGVVTGEEEEGHGVGVLPVLSALKDMTLKEGTSLSSSSFLSSS
LVVCNGHYKSSEPHGTCG*

mRNA from alignment at scaffold_18:274603..276735-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6610 ID=mRNA_6610|Name=jgi.p|Nanoce1779_2|632032|organism=Nannochloropsis oceanica|type=mRNA|length=2133bp|location=Sequence derived from alignment at scaffold_18:274603..276735- (Nannochloropsis oceanica)
ACAGGCAGGGCTATCGTGATCCAGCCGCCCATGTCGTCAGTCTAGTCAAC
CGCTTTCCCCCTCGAATGATGACGCCTGCCCTTGCCGTCTCTAGGGCCGC
TGCCCGCCGCCGTGCCCTGCTTCTCGAAGCCCGCAAGCAGCGCGAGGCGT
GGATCCAGGATGAAGATTATAAGGAGGTGGGTGTGGTGCAAGCCCTGATG
GAGAAGCAGCAACAACAGCGGCAGCAGCAGGAGCAGCCACCATCACAAAC
GAAGAAGAGGGGCACTCTCACAGGGCTTTTTGAAGGCATTCCAGGCTTAG
AGGGCGTGATGCCCATCGCGCGGGAGTACGTTGGGTTTTTAAACGAGCTC
GCAGGAGAAGGAGACAGGGAAGCGATCGAATTAGTAAGTGATGCCTCGTC
AGCCGCGGAAGGAGACGGAGAGGACGAGGAAGGCGAAGGAGCACAAGGGG
AGGAAGCTCCGCCCTTGCCAGACATAGCTCTCAATGCCTCCGTGTCCTTG
TCGTACGATGATTTCGTACAGCTTTTGGCTCATCCTGGATCAATTGAAGT
GGTGAAATCCATGCAGCGTTTCGTCACTGCCTTTATCCAAAGCCAAGAGC
GACGCGAGGGGTTGTCCGCTCTCCCTCCCTCCTCCCTCTCCACCCCTCGT
CCGCAAGGACAGCATCTGCACGCATTTATCGAAAGTTTGCGATTAGAAAT
GTGCAAGAGTGGGGTGTGGGCGGCACGGCTGGCAATCGAGGAGAAACGCT
CCTCTCCAGGCTCCTCCTCCTTTTCCTCCTCTTCCTCCTCCGCTTGGGAT
GGGTTGAGAGAGCACCTCGAAAAGTTCCTCGTTATCAAACTTTACCGCTA
CCTTTTCACCGAAGCTGAAACCCAGACCCTTAGAGATCAAGAAGCCGCCT
GGCAAGCCCGCCTTGACTCCCTCGCCTTCCTCGGCCCCGAGCACCTCGAA
GTCCGCTCCCTCATCTCCTCCTTGCCCTCCATATCCATCTCCACCTCTCT
AGCTCCCGCCATCGCCGAATTCAGCCTTGTCCCCTCTTACAAAGCCCCCG
TGGATATAATGTCTTGCCTTTTACGTTGCTCTTATCTTCTCTCTCGCGGG
CTCGTTGCAGCTCACCCTCCCGGAACCGGCCTACCAGGTGCGGATGAATT
CCTGCCTGCCATGATTTTAATGATCAAAGAGAGTAAACCTTCCGGCTTGA
GGAAAGCATTGGACATAGTGCAGTGTTACCGCTATCCGCCGCGATTGCAG
GTGTCCGAGCCGGCGTATGTCTTTACGAATGTGCTATCTGCCGTCCATTT
CCTGGAGACAGCGAAGGCGGGTCAGTTGAATATGACGCCTGAGGTGTTCG
AAAGATCCTTGGTAGCGTGTAGCAGGAGTATGGGAAGATGGAGGGAGGGT
GTGTTCGAAACAAGAGCAGGAGCAGGAGGAGGAGGAGGAGGGGTGGTAAC
GGGGGAAGAGGAGGAGGGACATGGGGTGGGAGTGTTGCCTGTTTTGTCTG
CACTTAAGGACATGACGCTTAAAGAGGGTACCTCGCTGTCTTCCTCTTCC
TTCTTGTCTTCCTCCCTCGTTGTCTGTAACGGTCATTACAAGAGCAGCGA
ACCCCATGGGTCAGTTTTGCTGCCAGCACGCAGTATTCAAGACATAAGAC
GAGAACGGATGGCTGGGGCAGCTGCAGCAAGAGTTGTAACTGTGCCAAGC
ACAGCAGCTGTCTCTCCCTCCAATTCTACTCGATCTTTTACTTCCTTGCG
TCTCCACGACTTGCTTGGACGCATTCAAGACACACATAGGAATCGCAGCA
GTAGTAGCAACAAAAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGATGC
ACGCAGGGCAAGCACCAAGAAGGAGCAATAGGACAACCCCACCTCCTCCA
ATCCCTCTCCTCCGAGCAGCTTAAGAAGGCCTGCTCCTTTCTAACTGTCC
CTCCGCAGGACTTGCGGGTAAGCGATATGTCGGCCCTGCTATCAGAGTAT
AGATGCCTCGCCATAGTTGCTGGCGAATGTCTTAATTTGCTGCAAGAGCA
AAGAAGGTAGGTTGATTTAAACGTAATCTTTAGGTAATGAAAAAGTGAGA
AACGATAAAGTAAAAAAAGCACACGAGACTTTT

Coding sequence (CDS) from alignment at scaffold_18:274603..276735-

>mRNA_6610 ID=mRNA_6610|Name=jgi.p|Nanoce1779_2|632032|organism=Nannochloropsis oceanica|type=CDS|length=3114bp|location=Sequence derived from alignment at scaffold_18:274603..276735- (Nannochloropsis oceanica)
GACTTGCGGGTAAATGATGACGCCTGCCCTTGCCGTCTCTAGGGCCGCTG
CCCGCCGCCGTGCCCTGCTTCTCGAAGCCCGCAAGCAGCGCGAGGCGTGG
ATCCAGGATGAAGATTATAAGGAGGTGGGTGTGGTGCAAGCCCTGATGGA
GAAGCAGCAACAACAGCGGCAGCAGCAGGAGCAGCCACCATCACAAACGA
AGAAGAGGGGCACTCTCACAGGGCTTTTTGAAGGCATTCCAGGCTTAGAG
GGCGTGATGCCCATCGCGCGGGAGTACGTTGGGTTTTTAAACGAGCTCGC
AGGAGAAGGAGACAGGGAAGCGATCGAATTAGTAAGTGATGCCTCGTCAG
CCGCGGAAGGAGACGGAGAGGACGAGGAAGGCGAAGGAGCACAAGGGGAG
GAAGCTCCGCCCTTGCCAGACATAGCTCTCAATGCCTCCGTGTCCTTGTC
GTACGATGATTTCGTACAGCTTTTGGCTCATCCTGGATCAATTGAAGTGG
TGAAATCCATGCAGCGTTTCGTCACTGCCTTTATCCAAAGCCAAGAGCGA
CGCGAGGGGTTGTCCGCTCTCCCTCCCTCCTCCCTCTCCACCCCTCGTCC
GCAAGGACAGCATCTGCACGCATTTATCGAAAGTTTGCGATTAGAAATGT
GCAAGAGTGGGGTGTGGGCGGCACGGCTGGCAATCGAGGAGAAACGCTCC
TCTCCAGGCTCCTCCTCCTTTTCCTCCTCTTCCTCCTCCGCTTGGGATGG
GTTGAGAGAGCACCTCGAAAAGTTCCTCGTTATCAAACTTTACCGCTACC
TTTTCACCGAAGCTGAAACCCAGACCCTTAGAGATCAAGAAGCCGCCTGG
CAAGCCCGCCTTGACTCCCTCGCCTTCCTCGGCCCCGAGCACCTCGAAGT
CCGCTCCCTCATCTCCTCCTTGCCCTCCATATCCATCTCCACCTCTCTAG
CTCCCGCCATCGCCGAATTCAGCCTTGTCCCCTCTTACAAAGCCCCCGTG
GATATAATGTCTTGCCTTTTACGTTGCTCTTATCTTCTCTCTCGCGGGCT
CGTTGCAGCTCACCCTCCCGGAACCGGCCTACCAGGTGCGGATGAATTCC
TGCCTGCCATGATTTTAATGATCAAAGAGAGTAAACCTTCCGGCTTGAGG
AAAGCATTGGACATAGTGCAGTGTTACCGCTATCCGCCGCGATTGCAGGT
GTCCGAGCCGGCGTATGTCTTTACGAATGTGCTATCTGCCGTCCATTTCC
TGGAGACAGCGAAGGCGGGTCAGTTGAATATGACGCCTGAGGTGTTCGAA
AGATCCTTGGTAGCGTGTAGCAGGAGTATGGGAAGATGGAGGGAGGGTGT
GTTCGAAACAAGAGCAGGAGCAGGAGGAGGAGGAGGAGGGGTGGTAACGG
GGGAAGAGGAGGAGGGACATGGGGTGGGAGTGTTGCCTGTTTTGTCTGCA
CTTAAGGACATGACGCTTAAAGAGGGTACCTCGCTGTCTTCCTCTTCCTT
CTTGTCTTCCTCCCTCGTTGTCTGTAACGGTCATTACAAGAGCAGCGAAC
CCCATGGGACTTGCGGGTAAATGATGACGCCTGCCCTTGCCGTCTCTAGG
GCCGCTGCCCGCCGCCGTGCCCTGCTTCTCGAAGCCCGCAAGCAGCGCGA
GGCGTGGATCCAGGATGAAGATTATAAGGAGGTGGGTGTGGTGCAAGCCC
TGATGGAGAAGCAGCAACAACAGCGGCAGCAGCAGGAGCAGCCACCATCA
CAAACGAAGAAGAGGGGCACTCTCACAGGGCTTTTTGAAGGCATTCCAGG
CTTAGAGGGCGTGATGCCCATCGCGCGGGAGTACGTTGGGTTTTTAAACG
AGCTCGCAGGAGAAGGAGACAGGGAAGCGATCGAATTAGTAAGTGATGCC
TCGTCAGCCGCGGAAGGAGACGGAGAGGACGAGGAAGGCGAAGGAGCACA
AGGGGAGGAAGCTCCGCCCTTGCCAGACATAGCTCTCAATGCCTCCGTGT
CCTTGTCGTACGATGATTTCGTACAGCTTTTGGCTCATCCTGGATCAATT
GAAGTGGTGAAATCCATGCAGCGTTTCGTCACTGCCTTTATCCAAAGCCA
AGAGCGACGCGAGGGGTTGTCCGCTCTCCCTCCCTCCTCCCTCTCCACCC
CTCGTCCGCAAGGACAGCATCTGCACGCATTTATCGAAAGTTTGCGATTA
GAAATGTGCAAGAGTGGGGTGTGGGCGGCACGGCTGGCAATCGAGGAGAA
ACGCTCCTCTCCAGGCTCCTCCTCCTTTTCCTCCTCTTCCTCCTCCGCTT
GGGATGGGTTGAGAGAGCACCTCGAAAAGTTCCTCGTTATCAAACTTTAC
CGCTACCTTTTCACCGAAGCTGAAACCCAGACCCTTAGAGATCAAGAAGC
CGCCTGGCAAGCCCGCCTTGACTCCCTCGCCTTCCTCGGCCCCGAGCACC
TCGAAGTCCGCTCCCTCATCTCCTCCTTGCCCTCCATATCCATCTCCACC
TCTCTAGCTCCCGCCATCGCCGAATTCAGCCTTGTCCCCTCTTACAAAGC
CCCCGTGGATATAATGTCTTGCCTTTTACGTTGCTCTTATCTTCTCTCTC
GCGGGCTCGTTGCAGCTCACCCTCCCGGAACCGGCCTACCAGGTGCGGAT
GAATTCCTGCCTGCCATGATTTTAATGATCAAAGAGAGTAAACCTTCCGG
CTTGAGGAAAGCATTGGACATAGTGCAGTGTTACCGCTATCCGCCGCGAT
TGCAGGTGTCCGAGCCGGCGTATGTCTTTACGAATGTGCTATCTGCCGTC
CATTTCCTGGAGACAGCGAAGGCGGGTCAGTTGAATATGACGCCTGAGGT
GTTCGAAAGATCCTTGGTAGCGTGTAGCAGGAGTATGGGAAGATGGAGGG
AGGGTGTGTTCGAAACAAGAGCAGGAGCAGGAGGAGGAGGAGGAGGGGTG
GTAACGGGGGAAGAGGAGGAGGGACATGGGGTGGGAGTGTTGCCTGTTTT
GTCTGCACTTAAGGACATGACGCTTAAAGAGGGTACCTCGCTGTCTTCCT
CTTCCTTCTTGTCTTCCTCCCTCGTTGTCTGTAACGGTCATTACAAGAGC
AGCGAACCCCATGG

Synonyms

Publications