jgi.p|Nanoce1779_2|531272, mRNA_6608 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531272
Unique NamemRNA_6608
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length471
Alignment locationscaffold_18:266251..266721 +

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Properties
Property NameValue
TranscriptId531358
TrackFilteredModels2
ProteinId531272
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:266251..266721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531272gene_6608Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531272mRNA_6608-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6608CDS_6608Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6608 ID=mRNA_6608|Name=jgi.p|Nanoce1779_2|531272|organism=Nannochloropsis oceanica|type=mRNA|length=471bp
ATGGAGTGTCATGCTACGGGTACCTACGTGGGAGATGTTTTGGAGCTGCA
AGCGATCGGCGACGTGCTAGGGAAGGCTCGGGGCGTCAAGGACAAGGATG
ATGTTCAGGGACTACTGCGCGTGGCTTCGGTCAAGAGCAACATCGGGCAT
GCAGAAGTGTCAGCGGGACTTTTTTCTTTGGCCAAGGTGATTGAGATGAT
GCGGCGTCGTGTGTACTTGCCGACGGCGGGCGTCACGACCCCACGAACTG
ACTTCGATTGGCAAGGGCATAACATGCGCGTGATTCAGGAGACGGAACCT
TTTGGTCCTGTGGAGAGCACCCCACCAGTGTTAATGGGTGTTAATTCCTT
TGGTATTGGTGGATCTTATTCTCATGTTATTGTGGAAGAATATCGTCCGC
CGGCCGCTTTGGTCCAGCGGGTGTTGGCTCGCCCGGCATTTGCAGGACCA
GTGCTCTTGCCTCTGTCGGCG
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protein sequence of jgi.p|Nanoce1779_2|531272

>mRNA_6608-protein ID=mRNA_6608-protein|Name=jgi.p|Nanoce1779_2|531272|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MECHATGTYVGDVLELQAIGDVLGKARGVKDKDDVQGLLRVASVKSNIGH
AEVSAGLFSLAKVIEMMRRRVYLPTAGVTTPRTDFDWQGHNMRVIQETEP
FGPVESTPPVLMGVNSFGIGGSYSHVIVEEYRPPAALVQRVLARPAFAGP
VLLPLSA
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mRNA from alignment at scaffold_18:266251..266721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6608 ID=mRNA_6608|Name=jgi.p|Nanoce1779_2|531272|organism=Nannochloropsis oceanica|type=mRNA|length=471bp|location=Sequence derived from alignment at scaffold_18:266251..266721+ (Nannochloropsis oceanica)
ATGGAGTGTCATGCTACGGGTACCTACGTGGGAGATGTTTTGGAGCTGCA
AGCGATCGGCGACGTGCTAGGGAAGGCTCGGGGCGTCAAGGACAAGGATG
ATGTTCAGGGACTACTGCGCGTGGCTTCGGTCAAGAGCAACATCGGGCAT
GCAGAAGTGTCAGCGGGACTTTTTTCTTTGGCCAAGGTGATTGAGATGAT
GCGGCGTCGTGTGTACTTGCCGACGGCGGGCGTCACGACCCCACGAACTG
ACTTCGATTGGCAAGGGCATAACATGCGCGTGATTCAGGAGACGGAACCT
TTTGGTCCTGTGGAGAGCACCCCACCAGTGTTAATGGGTGTTAATTCCTT
TGGTATTGGTGGATCTTATTCTCATGTTATTGTGGAAGAATATCGTCCGC
CGGCCGCTTTGGTCCAGCGGGTGTTGGCTCGCCCGGCATTTGCAGGACCA
GTGCTCTTGCCTCTGTCGGCG
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Coding sequence (CDS) from alignment at scaffold_18:266251..266721+

>mRNA_6608 ID=mRNA_6608|Name=jgi.p|Nanoce1779_2|531272|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_18:266251..266721+ (Nannochloropsis oceanica)
ATGGAGTGTCATGCTACGGGTACCTACGTGGGAGATGTTTTGGAGCTGCA
AGCGATCGGCGACGTGCTAGGGAAGGCTCGGGGCGTCAAGGACAAGGATG
ATGTTCAGGGACTACTGCGCGTGGCTTCGGTCAAGAGCAACATCGGGCAT
GCAGAAGTGTCAGCGGGACTTTTTTCTTTGGCCAAGGTGATTGAGATGAT
GCGGCGTCGTGTGTACTTGCCGACGGCGGGCGTCACGACCCCACGAACTG
ACTTCGATTGGCAAGGGCATAACATGCGCGTGATTCAGGAGACGGAACCT
TTTGGTCCTGTGGAGAGCACCCCACCAGTGTTAATGGGTGTTAATTCCTT
TGGTATTGGTGGATCTTATTCTCATGTTATTGTGGAAGAATATCGTCCGC
CGGCCGCTTTGGTCCAGCGGGTGTTGGCTCGCCCGGCATTTGCAGGACCA
GTGCTCTTGCCTCTGTCGGCG
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Synonyms
Publications