Properties
Property Name | Value |
TranscriptId | 122967 |
Track | FilteredModels2 |
ProteinId | 122881 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_18 | supercontig | scaffold_18:253175..256240 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6605 ID=mRNA_6605|Name=jgi.p|Nanoce1779_2|122881|organism=Nannochloropsis oceanica|type=mRNA|length=3066bp ACGCCCACACGCACCCCACAGGCCTCGTCTTTTGCCCTTGCTTTCCAGGA AAGTATTGTATCCTTGGCAATTTACCCCCACCGACCTCCCCCATCTCCAT CCCATGCGGGATCAAGTGCCTGACAACCACGAGGCCAATGGCGCGATGGC GACGGATGGGACCTCTCACGGCCCTGCGCGGCCTCGGCGGCCCGACAGCG AGACGCTGACATACCTGCGCTCATTGGAGCCTTTGATCGACAGAAGCGTG GCGGCCCTGCTCCAGCGGCAGCAGCAAGAACAAGGCCGAGGAGGATGTAG GGGCACAGTGGATGGAGACGATATCCAACAGCCGACGGAGGAAGACGAAG AGGAAGCGGAGGAACGGGCCTTGCTGGTGAGCAACTTGATCAACGAACTG ATGTTCAAGGTGGCCAGCTTGGCCATGGACAGGCACGCGGCGCCGTTGCT GGAAAAACTGGCTCGTCTGTGTACGCGCAAGCAGCTCGCACGTCTTTTAG AGGGTTGCTTAGGGTATGCGGCTAGCTTGGCGAGTAATCGATACTCTTCG CATGTGCTGCAGACGCTCTTGTCATTGGCGGGGCCTATGATTGAGGCAGA GATGCGTGGGGAGGACGAGGACGAGGGGGAGGACGAGGACGCCGACGCCC CTGTGCTTGATGTGGACGGCGAGGAAACTACCCCCAAAAGCCCCGTGACA TTATGTGGCTCAGCAAGTAAATTGGCGGAGGAGTTGCACGATTCGTGGTT GTCCTTGATTTACGATATCTGTGGGACTCACAGCATGCGAGCTCTTTTCT GTCTGTTGACGGGTATGCCGGTCGTGGCCGAACGCAGGGGAAAAAACGCC AAGCACCAGCATGCGATCGAAACGGCAATTGTTTTGGATTTCCAACATTG TGCCGCGGAAGGACGGAGGGCGGGGAACACAGGCGAAGCTGTAAATCTCC ACACGACCCCCCTAGTCATGTTTCAAGTGCCTGATACTTTCTCCATCGTT TTGGATGAAATGATCGCCGAATTGGGCAGAATAGAGCTCATGACTTTGCA TCAAACGCTTTGCGATGCCTATGCCAATCCTGCTCTATGCTTGCTCCTTC AAGCAGTGGCTCGAAAGGAAGGTGCGGCGCGACAAGAATTGACTCTCTCC CCCGCTGGCCTCTTTTTCAACAAAGTGGTTCAAAAAGCCCTGTGCACACA CACACCCTCCCGATGCGCCGAAGTCGTTTATGCCATGGCCGGTGAGAGCC TGAGCAGCCGCTTTCTAGAAGCCGTGCTCTGGCATACCGATCCAAGCACG TTCCTCGTGCAATTTTTTGAGATATGCATGCAGGGGAAGGTGATGGAATA TGCCGAAGATGAGGTGGCGAATTTTGTCCTTCAAACATGGTTGCAACGGA CAGAAAGTGCTAAACAAATCAAGGTGGTTTTGGAGGAACTAGGACCGTCT TTTGGTAAGCTGGTGAAGGAAAAACGAAGGTCGGGGGTGTTGTGGCGCTT GGCGGGGGCATGTCTAAGGCTGGGAAAGGGGGAGAAAAAGATTGTCAAGG CCTTATTGCTTGCATTGGGTGGGAAAGAGGGAGAGGAGGTGAAGGGGGAA GGGACAACTTTAACGGCTGCTGTACGGGCGGTGCAGACACTGCTGGCTTT GAGAATAGGCCAAGAAGATGCAGGGGGAGGGGAGAAGAAAGGACGCGGCG TTGGTAGAGATGATGGTCGCCTGTATTTGAGTGTGCCGGGGGCACGGCTG CTTGAGTGTGTCATGCGGTTCCCGGGTCGGGAAGGGGGAGAAATGGGAGT TGGATGGGTGTTTTGTCAGGCCGTGTTAGAATTACCTTCCGAGAGTCTCG TCGCGATTGCGAAAGACAATGTGGGAAGTCGTACGATTCTTGACCCGCTC TTGGAGCTCTCGTCTACAGCGACTGCAGCGATGACAGAGGCAACAGCTAC GGCTGGGGACACCAAGAAGAGAAAGGAGAATGGTTGTGGTAAGAATGGCA GCGGCAGTGGCGGCGGTAGCAGCAGCAGCGGCCGCAGCAGTACCAGTCAA TTGGCGGATCATTTGGCAGACAAATTACGCGGGCATTTTGCGTCATTAGC GCTGCATCCTGTTGGATACCATGTGTTGACTAAATGCTTCACTACTGGTG GGTTGAGCTTAGAAGGGAAACGTGCGATCGCTCAGGAACTGATGCAAGCG GAAAGCAGACTTGCTGGCTGTCATTTCGGCCGAAGGGCTTTGGGTGTGGT AGGGGTGAGTTTGTTCAGAGGGAATAGGAAGAAGTGGGAGGAACTGCAGA GGGAGGGGAAGAAGAAGAAGCAGGTGTTGGACAATTTGTTTGAAATGCTG GAGAGGGAGGTAGTGGTGGCTGGAAAGGGGCAAAGGAAGCGGCAAGTGAA GGAAGGAGACAAGGAAGAGGGGGAGGGAGGGAAGATGAGGAGTCCTTCGT ACGAAAAGGAAGGCAAGGATGGTGAGTCATTTTTGGACCTTCTGATGGGA AATAAGCAGGGTAAGAAGGAGACGGAGAAAAAGAAGGAGGAAGAGGGACG AGAGGAGGAAGAGGGTGGTGGGGATTTGGGTTTTGTGCTGGAGGCGATTA AGCGAAGCGGCTGTGGCAGTGAGACACTAAGACGGTCTGCTCTAGACAAC GGTTACGGGCGTAAGAGGAAGATCAGTCGTGGCGCCAGCTCCGAGGAGCA GGAGCGGGCACTGCCACGACGAAGGAAAGATGTGCCAGCTGCCAATGCTG CTCCTTCCTCGGCTGTTCCCAAGCCCAAGAAGAAGTACCGACACGACAAC GACTCAAAGCATGCACGGGGGACGGCGGTGGAAAAGGCTCAGCGCCTATT GGGGACGCGGACGATGATGAGCAAGAGCGAGCTCCTCACGGCCGTGGAGG ACTTGGAGCGAGACGTCAAGGGGGGGAGAAACGGTGGCGGCAGTCGCAAC GATGCGCCCGAGGTTGTGAAGACCGAGAAAAAGAGCAGTAGCAAGACATG ACGAAAGCAAGTATATGTGTTTGTGTAAAAGTAAATTACAAGAACGAGGA ACAAAATTTAAAAAAC back to topprotein sequence of jgi.p|Nanoce1779_2|122881 >mRNA_6605-protein ID=mRNA_6605-protein|Name=jgi.p|Nanoce1779_2|122881|organism=Nannochloropsis oceanica|type=polypeptide|length=966bp MRDQVPDNHEANGAMATDGTSHGPARPRRPDSETLTYLRSLEPLIDRSVA ALLQRQQQEQGRGGCRGTVDGDDIQQPTEEDEEEAEERALLVSNLINELM FKVASLAMDRHAAPLLEKLARLCTRKQLARLLEGCLGYAASLASNRYSSH VLQTLLSLAGPMIEAEMRGEDEDEGEDEDADAPVLDVDGEETTPKSPVTL CGSASKLAEELHDSWLSLIYDICGTHSMRALFCLLTGMPVVAERRGKNAK HQHAIETAIVLDFQHCAAEGRRAGNTGEAVNLHTTPLVMFQVPDTFSIVL DEMIAELGRIELMTLHQTLCDAYANPALCLLLQAVARKEGAARQELTLSP AGLFFNKVVQKALCTHTPSRCAEVVYAMAGESLSSRFLEAVLWHTDPSTF LVQFFEICMQGKVMEYAEDEVANFVLQTWLQRTESAKQIKVVLEELGPSF GKLVKEKRRSGVLWRLAGACLRLGKGEKKIVKALLLALGGKEGEEVKGEG TTLTAAVRAVQTLLALRIGQEDAGGGEKKGRGVGRDDGRLYLSVPGARLL ECVMRFPGREGGEMGVGWVFCQAVLELPSESLVAIAKDNVGSRTILDPLL ELSSTATAAMTEATATAGDTKKRKENGCGKNGSGSGGGSSSSGRSSTSQL ADHLADKLRGHFASLALHPVGYHVLTKCFTTGGLSLEGKRAIAQELMQAE SRLAGCHFGRRALGVVGVSLFRGNRKKWEELQREGKKKKQVLDNLFEMLE REVVVAGKGQRKRQVKEGDKEEGEGGKMRSPSYEKEGKDGESFLDLLMGN KQGKKETEKKKEEEGREEEEGGGDLGFVLEAIKRSGCGSETLRRSALDNG YGRKRKISRGASSEEQERALPRRRKDVPAANAAPSSAVPKPKKKYRHDND SKHARGTAVEKAQRLLGTRTMMSKSELLTAVEDLERDVKGGRNGGGSRND APEVVKTEKKSSSKT* back to topmRNA from alignment at scaffold_18:253175..256240+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6605 ID=mRNA_6605|Name=jgi.p|Nanoce1779_2|122881|organism=Nannochloropsis oceanica|type=mRNA|length=3066bp|location=Sequence derived from alignment at scaffold_18:253175..256240+ (Nannochloropsis oceanica) ACGCCCACACGCACCCCACAGGCCTCGTCTTTTGCCCTTGCTTTCCAGGA
AAGTATTGTATCCTTGGCAATTTACCCCCACCGACCTCCCCCATCTCCAT
CCCATGCGGGATCAAGTGCCTGACAACCACGAGGCCAATGGCGCGATGGC
GACGGATGGGACCTCTCACGGCCCTGCGCGGCCTCGGCGGCCCGACAGCG
AGACGCTGACATACCTGCGCTCATTGGAGCCTTTGATCGACAGAAGCGTG
GCGGCCCTGCTCCAGCGGCAGCAGCAAGAACAAGGCCGAGGAGGATGTAG
GGGCACAGTGGATGGAGACGATATCCAACAGCCGACGGAGGAAGACGAAG
AGGAAGCGGAGGAACGGGCCTTGCTGGTGAGCAACTTGATCAACGAACTG
ATGTTCAAGGTGGCCAGCTTGGCCATGGACAGGCACGCGGCGCCGTTGCT
GGAAAAACTGGCTCGTCTGTGTACGCGCAAGCAGCTCGCACGTCTTTTAG
AGGGTTGCTTAGGGTATGCGGCTAGCTTGGCGAGTAATCGATACTCTTCG
CATGTGCTGCAGACGCTCTTGTCATTGGCGGGGCCTATGATTGAGGCAGA
GATGCGTGGGGAGGACGAGGACGAGGGGGAGGACGAGGACGCCGACGCCC
CTGTGCTTGATGTGGACGGCGAGGAAACTACCCCCAAAAGCCCCGTGACA
TTATGTGGCTCAGCAAGTAAATTGGCGGAGGAGTTGCACGATTCGTGGTT
GTCCTTGATTTACGATATCTGTGGGACTCACAGCATGCGAGCTCTTTTCT
GTCTGTTGACGGGTATGCCGGTCGTGGCCGAACGCAGGGGAAAAAACGCC
AAGCACCAGCATGCGATCGAAACGGCAATTGTTTTGGATTTCCAACATTG
TGCCGCGGAAGGACGGAGGGCGGGGAACACAGGCGAAGCTGTAAATCTCC
ACACGACCCCCCTAGTCATGTTTCAAGTGCCTGATACTTTCTCCATCGTT
TTGGATGAAATGATCGCCGAATTGGGCAGAATAGAGCTCATGACTTTGCA
TCAAACGCTTTGCGATGCCTATGCCAATCCTGCTCTATGCTTGCTCCTTC
AAGCAGTGGCTCGAAAGGAAGGTGCGGCGCGACAAGAATTGACTCTCTCC
CCCGCTGGCCTCTTTTTCAACAAAGTGGTTCAAAAAGCCCTGTGCACACA
CACACCCTCCCGATGCGCCGAAGTCGTTTATGCCATGGCCGGTGAGAGCC
TGAGCAGCCGCTTTCTAGAAGCCGTGCTCTGGCATACCGATCCAAGCACG
TTCCTCGTGCAATTTTTTGAGATATGCATGCAGGGGAAGGTGATGGAATA
TGCCGAAGATGAGGTGGCGAATTTTGTCCTTCAAACATGGTTGCAACGGA
CAGAAAGTGCTAAACAAATCAAGGTGGTTTTGGAGGAACTAGGACCGTCT
TTTGGTAAGCTGGTGAAGGAAAAACGAAGGTCGGGGGTGTTGTGGCGCTT
GGCGGGGGCATGTCTAAGGCTGGGAAAGGGGGAGAAAAAGATTGTCAAGG
CCTTATTGCTTGCATTGGGTGGGAAAGAGGGAGAGGAGGTGAAGGGGGAA
GGGACAACTTTAACGGCTGCTGTACGGGCGGTGCAGACACTGCTGGCTTT
GAGAATAGGCCAAGAAGATGCAGGGGGAGGGGAGAAGAAAGGACGCGGCG
TTGGTAGAGATGATGGTCGCCTGTATTTGAGTGTGCCGGGGGCACGGCTG
CTTGAGTGTGTCATGCGGTTCCCGGGTCGGGAAGGGGGAGAAATGGGAGT
TGGATGGGTGTTTTGTCAGGCCGTGTTAGAATTACCTTCCGAGAGTCTCG
TCGCGATTGCGAAAGACAATGTGGGAAGTCGTACGATTCTTGACCCGCTC
TTGGAGCTCTCGTCTACAGCGACTGCAGCGATGACAGAGGCAACAGCTAC
GGCTGGGGACACCAAGAAGAGAAAGGAGAATGGTTGTGGTAAGAATGGCA
GCGGCAGTGGCGGCGGTAGCAGCAGCAGCGGCCGCAGCAGTACCAGTCAA
TTGGCGGATCATTTGGCAGACAAATTACGCGGGCATTTTGCGTCATTAGC
GCTGCATCCTGTTGGATACCATGTGTTGACTAAATGCTTCACTACTGGTG
GGTTGAGCTTAGAAGGGAAACGTGCGATCGCTCAGGAACTGATGCAAGCG
GAAAGCAGACTTGCTGGCTGTCATTTCGGCCGAAGGGCTTTGGGTGTGGT
AGGGGTGAGTTTGTTCAGAGGGAATAGGAAGAAGTGGGAGGAACTGCAGA
GGGAGGGGAAGAAGAAGAAGCAGGTGTTGGACAATTTGTTTGAAATGCTG
GAGAGGGAGGTAGTGGTGGCTGGAAAGGGGCAAAGGAAGCGGCAAGTGAA
GGAAGGAGACAAGGAAGAGGGGGAGGGAGGGAAGATGAGGAGTCCTTCGT
ACGAAAAGGAAGGCAAGGATGGTGAGTCATTTTTGGACCTTCTGATGGGA
AATAAGCAGGGTAAGAAGGAGACGGAGAAAAAGAAGGAGGAAGAGGGACG
AGAGGAGGAAGAGGGTGGTGGGGATTTGGGTTTTGTGCTGGAGGCGATTA
AGCGAAGCGGCTGTGGCAGTGAGACACTAAGACGGTCTGCTCTAGACAAC
GGTTACGGGCGTAAGAGGAAGATCAGTCGTGGCGCCAGCTCCGAGGAGCA
GGAGCGGGCACTGCCACGACGAAGGAAAGATGTGCCAGCTGCCAATGCTG
CTCCTTCCTCGGCTGTTCCCAAGCCCAAGAAGAAGTACCGACACGACAAC
GACTCAAAGCATGCACGGGGGACGGCGGTGGAAAAGGCTCAGCGCCTATT
GGGGACGCGGACGATGATGAGCAAGAGCGAGCTCCTCACGGCCGTGGAGG
ACTTGGAGCGAGACGTCAAGGGGGGGAGAAACGGTGGCGGCAGTCGCAAC
GATGCGCCCGAGGTTGTGAAGACCGAGAAAAAGAGCAGTAGCAAGACATG
ACGAAAGCAAGTATATGTGTTTGTGTAAAAGTAAATTACAAGAACGAGGA
ACAAAATTTAAAAAAC back to topCoding sequence (CDS) from alignment at scaffold_18:253175..256240+ >mRNA_6605 ID=mRNA_6605|Name=jgi.p|Nanoce1779_2|122881|organism=Nannochloropsis oceanica|type=CDS|length=2898bp|location=Sequence derived from alignment at scaffold_18:253175..256240+ (Nannochloropsis oceanica) ATGCGGGATCAAGTGCCTGACAACCACGAGGCCAATGGCGCGATGGCGAC GGATGGGACCTCTCACGGCCCTGCGCGGCCTCGGCGGCCCGACAGCGAGA CGCTGACATACCTGCGCTCATTGGAGCCTTTGATCGACAGAAGCGTGGCG GCCCTGCTCCAGCGGCAGCAGCAAGAACAAGGCCGAGGAGGATGTAGGGG CACAGTGGATGGAGACGATATCCAACAGCCGACGGAGGAAGACGAAGAGG AAGCGGAGGAACGGGCCTTGCTGGTGAGCAACTTGATCAACGAACTGATG TTCAAGGTGGCCAGCTTGGCCATGGACAGGCACGCGGCGCCGTTGCTGGA AAAACTGGCTCGTCTGTGTACGCGCAAGCAGCTCGCACGTCTTTTAGAGG GTTGCTTAGGGTATGCGGCTAGCTTGGCGAGTAATCGATACTCTTCGCAT GTGCTGCAGACGCTCTTGTCATTGGCGGGGCCTATGATTGAGGCAGAGAT GCGTGGGGAGGACGAGGACGAGGGGGAGGACGAGGACGCCGACGCCCCTG TGCTTGATGTGGACGGCGAGGAAACTACCCCCAAAAGCCCCGTGACATTA TGTGGCTCAGCAAGTAAATTGGCGGAGGAGTTGCACGATTCGTGGTTGTC CTTGATTTACGATATCTGTGGGACTCACAGCATGCGAGCTCTTTTCTGTC TGTTGACGGGTATGCCGGTCGTGGCCGAACGCAGGGGAAAAAACGCCAAG CACCAGCATGCGATCGAAACGGCAATTGTTTTGGATTTCCAACATTGTGC CGCGGAAGGACGGAGGGCGGGGAACACAGGCGAAGCTGTAAATCTCCACA CGACCCCCCTAGTCATGTTTCAAGTGCCTGATACTTTCTCCATCGTTTTG GATGAAATGATCGCCGAATTGGGCAGAATAGAGCTCATGACTTTGCATCA AACGCTTTGCGATGCCTATGCCAATCCTGCTCTATGCTTGCTCCTTCAAG CAGTGGCTCGAAAGGAAGGTGCGGCGCGACAAGAATTGACTCTCTCCCCC GCTGGCCTCTTTTTCAACAAAGTGGTTCAAAAAGCCCTGTGCACACACAC ACCCTCCCGATGCGCCGAAGTCGTTTATGCCATGGCCGGTGAGAGCCTGA GCAGCCGCTTTCTAGAAGCCGTGCTCTGGCATACCGATCCAAGCACGTTC CTCGTGCAATTTTTTGAGATATGCATGCAGGGGAAGGTGATGGAATATGC CGAAGATGAGGTGGCGAATTTTGTCCTTCAAACATGGTTGCAACGGACAG AAAGTGCTAAACAAATCAAGGTGGTTTTGGAGGAACTAGGACCGTCTTTT GGTAAGCTGGTGAAGGAAAAACGAAGGTCGGGGGTGTTGTGGCGCTTGGC GGGGGCATGTCTAAGGCTGGGAAAGGGGGAGAAAAAGATTGTCAAGGCCT TATTGCTTGCATTGGGTGGGAAAGAGGGAGAGGAGGTGAAGGGGGAAGGG ACAACTTTAACGGCTGCTGTACGGGCGGTGCAGACACTGCTGGCTTTGAG AATAGGCCAAGAAGATGCAGGGGGAGGGGAGAAGAAAGGACGCGGCGTTG GTAGAGATGATGGTCGCCTGTATTTGAGTGTGCCGGGGGCACGGCTGCTT GAGTGTGTCATGCGGTTCCCGGGTCGGGAAGGGGGAGAAATGGGAGTTGG ATGGGTGTTTTGTCAGGCCGTGTTAGAATTACCTTCCGAGAGTCTCGTCG CGATTGCGAAAGACAATGTGGGAAGTCGTACGATTCTTGACCCGCTCTTG GAGCTCTCGTCTACAGCGACTGCAGCGATGACAGAGGCAACAGCTACGGC TGGGGACACCAAGAAGAGAAAGGAGAATGGTTGTGGTAAGAATGGCAGCG GCAGTGGCGGCGGTAGCAGCAGCAGCGGCCGCAGCAGTACCAGTCAATTG GCGGATCATTTGGCAGACAAATTACGCGGGCATTTTGCGTCATTAGCGCT GCATCCTGTTGGATACCATGTGTTGACTAAATGCTTCACTACTGGTGGGT TGAGCTTAGAAGGGAAACGTGCGATCGCTCAGGAACTGATGCAAGCGGAA AGCAGACTTGCTGGCTGTCATTTCGGCCGAAGGGCTTTGGGTGTGGTAGG GGTGAGTTTGTTCAGAGGGAATAGGAAGAAGTGGGAGGAACTGCAGAGGG AGGGGAAGAAGAAGAAGCAGGTGTTGGACAATTTGTTTGAAATGCTGGAG AGGGAGGTAGTGGTGGCTGGAAAGGGGCAAAGGAAGCGGCAAGTGAAGGA AGGAGACAAGGAAGAGGGGGAGGGAGGGAAGATGAGGAGTCCTTCGTACG AAAAGGAAGGCAAGGATGGTGAGTCATTTTTGGACCTTCTGATGGGAAAT AAGCAGGGTAAGAAGGAGACGGAGAAAAAGAAGGAGGAAGAGGGACGAGA GGAGGAAGAGGGTGGTGGGGATTTGGGTTTTGTGCTGGAGGCGATTAAGC GAAGCGGCTGTGGCAGTGAGACACTAAGACGGTCTGCTCTAGACAACGGT TACGGGCGTAAGAGGAAGATCAGTCGTGGCGCCAGCTCCGAGGAGCAGGA GCGGGCACTGCCACGACGAAGGAAAGATGTGCCAGCTGCCAATGCTGCTC CTTCCTCGGCTGTTCCCAAGCCCAAGAAGAAGTACCGACACGACAACGAC TCAAAGCATGCACGGGGGACGGCGGTGGAAAAGGCTCAGCGCCTATTGGG GACGCGGACGATGATGAGCAAGAGCGAGCTCCTCACGGCCGTGGAGGACT TGGAGCGAGACGTCAAGGGGGGGAGAAACGGTGGCGGCAGTCGCAACGAT GCGCCCGAGGTTGTGAAGACCGAGAAAAAGAGCAGTAGCAAGACATGA back to top
|