jgi.p|Nanoce1779_2|672490, mRNA_6602 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672490
Unique Name	mRNA_6602
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2205
Alignment location	scaffold_18:242677..245066 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672576
Track	FilteredModels2
ProteinId	672490

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:242677..245066 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672490	gene_6602	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672490	mRNA_6602-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6602	CDS_6602	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:242677..245066+
coding sequence from alignment at scaffold_18:242677..245066+

mRNA sequence

>mRNA_6602 ID=mRNA_6602|Name=jgi.p|Nanoce1779_2|672490|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp
ACAGCCCCGCCTTGTCTACAGTTTTCTGTGCGCGTCAGCACTCGCCGAAC
AACGAGCAAGCCAAGCAGGAACAAAAGCAATGGTAGTCCCCAAGCTCTTG
CCATACGACGTCCACGAGCCGCCCAAGGGCTTCAACTCTTTCACCGCCAA
GGCCCATGAGCTAATTCCCTTGAGCGCACAGCGGGCCTTCCGCGATCGGC
ATGCTCATTGGTTTGATCGGGCCGTGTCGGTCTCCGCCGTTGCCTTGGCG
GCTCGCCACCCGAAGGCCCTGCTTCGCTTCCTGGCGCTGCGTCGCTCGGC
ACAAGTCTTTCAGTACGGCCTCGAGTCGTCTCAGCAGGTCGTCGAGCTGC
ATCAATGCGGGAAGCAAGGCGCGCCTGTGGTGATTTTCATGCACGGTGGG
GCGTGGTTCAGCGGTCGGCCGTGGATGTATCGCTTGATTGCGACGGCCCT
GAATCGACAAGGGTTGGACGTAGGCATTGTGGGCTATGGGACTTACAAAA
CCTTGCCCCCCATACCGGGTACGCTGTTGCCTGACCCGGCTTTGGAAGGG
ATAGGCGATTTTTCCGTGGTGCTAGGAAATGTGGACCATCAAATCGACGA
CCTGCAGCACTGTCTGGAATTCCTCATGACGGACCCTCGCAGCCCCTATA
GCATTGATGACACGCCCATTTTCCTTTCCGGACACTCGTCCGGGGCGCAT
GTCTGTAGCCTCTTGCTCCTCCGCCAAGCCCTGGGGCTACCTGGTCATGC
CACCCTCCCTCGGCCCATCGCGGGTTTCATCGGACTTAGTGGTGTGTACG
ACGTGGCGGCCCACCACGAGTATGAAGCACGGAGAGGAGTCCACGAAATT
TCGGGCATGGGCCCATGTAACGGTGGCCTGGCCGGTTTCCATCGCAATTC
CCCGACGACCTTGGCGGGAATGTTAACGGCTGAACAGGCGGAGAAGTTGC
CGCCGTGTTTGATATTGCATGGGGTGGAGGATGAGACCGTGCCGTTCACG
AGTTCGTTAGTGTTTGCGAATTGTTTGGAGGGACATGGAGGGAGGGTGAA
GACGGGATGGCTCCCTGGGATGGACCACCAGGGGACGGTGGCAGTGCTGA
TGATGGGGAGGGACTCGGAGGTGGAGCGGCAGATAGCCGCGTTTTCGGGG
GGGAAAGGAGGGAGGAAGGGGGAGGAAGGAGTGGCGCCCATGGCGAGGTT
GTAAAGAGAAACGAGAAAGATACCATGACATATAGAGCAGAGAGGGATTG
TTTTGAGGTGGATAAATCAAACGTTTGGAATGCAATGAAAGTAAGAATGG
ATGAAGAAGTAGCTTTGCATGTGCGTGTGCGTATATATACATTTCGCTTC
TTGGAATGAGGAATGACACCGCCATTTAATCCAGGGGGAATAACGCATGA
GAGAGAAAGAGCATTTTCAAACATGGGAGATTAGAGGGCAGACAAAGAGC
AAGGGAGAAGGACGATGAAGAGGGAGACCCACTCAAAGGGCAGATGAAGC
ACGTCCCTCATCTCGTGGTGAGCGAATTGTCAGAGCCTTCCCCGAGGCCA
CGTCGAAGCTGCGGCACATATGCGGCACATACGTTGGCAGAATATCAAGT
CACGTATCTTTGCTCCGTGCTGCCAACTCGGGTGCCTAGACCATCGCCTC
CCACCTAACTTTGCATGACTTTGTCCAAAATCGAACACCTCCCCAAGGCA
GCTCCGTTCTTCATCAGCAGAGCATCTTAAGCCCAATCCTACCACTGTAC
CGTCCGCCCATGCCACCTCTTCAACACACGCGAGGAGAAGCATCTACCAT
TTCATGCATTGCCTGACCTCGACATTCAGCCTGCCATCTGACAGCCGGCT
TCCCTAGGCCCGCCTCGCGCTAGTGCAGAAGCATGTCGTCACCATTGCAG
AAGCAAGCGATTCATGCCACCGCGTCCAACTCCACGCCTGTAGTAGATGT
GGACGGCGAGTCCTTACTTAATTTTTCCCTGTCAAACATTTCCATAGCCA
CGAACGCATTTACCAGAATTTGATGAAAGACGCCATAAGAGTACCCCGAT
ATCTGCCCCCTTCGAAATGTGCCCCCCCCCCCTTGAAAACTTCACGGGAT
CCGATCAAGAAACAACAACAACGACGACGGTAAGAAACAGTGTCGGTAAC
ATAAATATTGAAAGTGCCACTAAAAATTCCTTGTGTGTGGTCGAAACAAT
TTTTT

protein sequence of jgi.p|Nanoce1779_2|672490

>mRNA_6602-protein ID=mRNA_6602-protein|Name=jgi.p|Nanoce1779_2|672490|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MVVPKLLPYDVHEPPKGFNSFTAKAHELIPLSAQRAFRDRHAHWFDRAVS
VSAVALAARHPKALLRFLALRRSAQVFQYGLESSQQVVELHQCGKQGAPV
VIFMHGGAWFSGRPWMYRLIATALNRQGLDVGIVGYGTYKTLPPIPGTLL
PDPALEGIGDFSVVLGNVDHQIDDLQHCLEFLMTDPRSPYSIDDTPIFLS
GHSSGAHVCSLLLLRQALGLPGHATLPRPIAGFIGLSGVYDVAAHHEYEA
RRGVHEISGMGPCNGGLAGFHRNSPTTLAGMLTAEQAEKLPPCLILHGVE
DETVPFTSSLVFANCLEGHGGRVKTGWLPGMDHQGTVAVLMMGRDSEVER
QIAAFSGGKGGRKGEEGVAPMARL*

mRNA from alignment at scaffold_18:242677..245066+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6602 ID=mRNA_6602|Name=jgi.p|Nanoce1779_2|672490|organism=Nannochloropsis oceanica|type=mRNA|length=2390bp|location=Sequence derived from alignment at scaffold_18:242677..245066+ (Nannochloropsis oceanica)
ACAGCCCCGCCTTGTCTACAGTTTTCTGTGCGCGTCAGCACTCGCCGAAC
AACGAGCAAGCCAAGCAGGAACAAAAGCAATGGTAGTCCCCAAGCTCTTG
CCATACGACGTCCACGAGCCGCCCAAGGGCTTCAACTCTTTCACCGCCAA
GGCCCATGAGCTAATTCCCTTGAGCGCACAGCGGGCCTTCCGCGATCGGC
ATGCTCATTGGTTTGATCGGGCCGTGTCGGTCTCCGCCGTTGCCTTGGCG
GCTCGCCACCCGAAGGCCCTGCTTCGCTTCCTGGCGCTGCGTCGCTCGGC
ACAAGTCTTTCAGTACGGCCTCGAGTCGTCTCAGCAGGTCGTCGAGCTGC
ATCAATGCGGGAAGCAAGGCGCGCCTGTGGTGATTTTCATGCACGGTGGG
GCGTGGTTCAGCGGTCGGCCGTGGATGTATCGCTTGATTGCGACGGCCCT
GAATCGACAAGGGTTGGACGTAGGCATTGTGGGCTATGGGACTTACAAAA
CCTTGCCCCCCATACCGGGTACGCTGTTGCCTGACCCGGCTTTGGAAGGG
ATAGGCGATTTTTCCGTGGTGCTAGGAAATGTGGTAAGTCTCTCTCTTCC
TTCGTCACTTTTCTTCCTCCCTCCCTTAGAAATTCATCCCCTCCATTCTT
TCGTTTCCTGCACTTTAATGTGCCAATACCCTCTCTACCCTTGCTCTTAC
TCCTGCTCCTTTCCCCGTCCTTCTCACTACCCACCCTGCCCTTTGCTTTC
CCCCCAATCAAATCACAGGACCATCAAATCGACGACCTGCAGCACTGTCT
GGAATTCCTCATGACGGACCCTCGCAGCCCCTATAGCATTGATGACACGC
CCATTTTCCTTTCCGGACACTCGTCCGGGGCGCATGTCTGTAGCCTCTTG
CTCCTCCGCCAAGCCCTGGGGCTACCTGGTCATGCCACCCTCCCTCGGCC
CATCGCGGGTTTCATCGGACTTAGTGGTGTGTACGACGTGGCGGCCCACC
ACGAGTATGAAGCACGGAGAGGAGTCCACGAAATTTCGGGCATGGGCCCA
TGTAACGGTGGCCTGGCCGGTTTCCATCGCAATTCCCCGACGACCTTGGC
GGGAATGTTAACGGCTGAACAGGCGGAGAAGTTGCCGCCGTGTTTGATAT
TGCATGGGGTGGAGGATGAGACCGTGCCGTTCACGAGTTCGTTAGTGTTT
GCGAATTGTTTGGAGGGACATGGAGGGAGGGTGAAGACGGGATGGCTCCC
TGGGATGGACCACCAGGGGACGGTGGCAGTGCTGATGATGGGGAGGGACT
CGGAGGTGGAGCGGCAGATAGCCGCGTTTTCGGGGGGGAAAGGAGGGAGG
AAGGGGGAGGAAGGAGTGGCGCCCATGGCGAGGTTGTAAAGAGAAACGAG
AAAGATACCATGACATATAGAGCAGAGAGGGATTGTTTTGAGGTGGATAA
ATCAAACGTTTGGAATGCAATGAAAGTAAGAATGGATGAAGAAGTAGCTT
TGCATGTGCGTGTGCGTATATATACATTTCGCTTCTTGGAATGAGGAATG
ACACCGCCATTTAATCCAGGGGGAATAACGCATGAGAGAGAAAGAGCATT
TTCAAACATGGGAGATTAGAGGGCAGACAAAGAGCAAGGGAGAAGGACGA
TGAAGAGGGAGACCCACTCAAAGGGCAGATGAAGCACGTCCCTCATCTCG
TGGTGAGCGAATTGTCAGAGCCTTCCCCGAGGCCACGTCGAAGCTGCGGC
ACATATGCGGCACATACGTTGGCAGAATATCAAGTCACGTATCTTTGCTC
CGTGCTGCCAACTCGGGTGCCTAGACCATCGCCTCCCACCTAACTTTGCA
TGACTTTGTCCAAAATCGAACACCTCCCCAAGGCAGCTCCGTTCTTCATC
AGCAGAGCATCTTAAGCCCAATCCTACCACTGTACCGTCCGCCCATGCCA
CCTCTTCAACACACGCGAGGAGAAGCATCTACCATTTCATGCATTGCCTG
ACCTCGACATTCAGCCTGCCATCTGACAGCCGGCTTCCCTAGGCCCGCCT
CGCGCTAGTGCAGAAGCATGTCGTCACCATTGCAGAAGCAAGCGATTCAT
GCCACCGCGTCCAACTCCACGCCTGTAGTAGATGTGGACGGCGAGTCCTT
ACTTAATTTTTCCCTGTCAAACATTTCCATAGCCACGAACGCATTTACCA
GAATTTGATGAAAGACGCCATAAGAGTACCCCGATATCTGCCCCCTTCGA
AATGTGCCCCCCCCCCCTTGAAAACTTCACGGGATCCGATCAAGAAACAA
CAACAACGACGACGGTAAGAAACAGTGTCGGTAACATAAATATTGAAAGT
GCCACTAAAAATTCCTTGTGTGTGGTCGAAACAATTTTTT

Coding sequence (CDS) from alignment at scaffold_18:242677..245066+

>mRNA_6602 ID=mRNA_6602|Name=jgi.p|Nanoce1779_2|672490|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at scaffold_18:242677..245066+ (Nannochloropsis oceanica)
ATGGTAGTCCCCAAGCTCTTGCCATACGACGTCCACGAGCCGCCCAAGGG
CTTCAACTCTTTCACCGCCAAGGCCCATGAGCTAATTCCCTTGAGCGCAC
AGCGGGCCTTCCGCGATCGGCATGCTCATTGGTTTGATCGGGCCGTGTCG
GTCTCCGCCGTTGCCTTGGCGGCTCGCCACCCGAAGGCCCTGCTTCGCTT
CCTGGCGCTGCGTCGCTCGGCACAAGTCTTTCAGTACGGCCTCGAGTCGT
CTCAGCAGGTCGTCGAGCTGCATCAATGCGGGAAGCAAGGCGCGCCTGTG
GTGATTTTCATGCACGGTGGGGCGTGGTTCAGCGGTCGGCCGTGGATGTA
TCGCTTGATTGCGACGGCCCTGAATCGACAAGGGTTGGACGTAGGCATTG
TGGGCTATGGGACTTACAAAACCTTGCCCCCCATACCGGGTACGCTGTTG
CCTGACCCGGCTTTGGAAGGGATAGGCGATTTTTCCGTGGTGCTAGGAAA
TGTGGACCATCAAATCGACGACCTGCAGCACTGTCTGGAATTCCTCATGA
CGGACCCTCGCAGCCCCTATAGCATTGATGACACGCCCATTTTCCTTTCC
GGACACTCGTCCGGGGCGCATGTCTGTAGCCTCTTGCTCCTCCGCCAAGC
CCTGGGGCTACCTGGTCATGCCACCCTCCCTCGGCCCATCGCGGGTTTCA
TCGGACTTAGTGGTGTGTACGACGTGGCGGCCCACCACGAGTATGAAGCA
CGGAGAGGAGTCCACGAAATTTCGGGCATGGGCCCATGTAACGGTGGCCT
GGCCGGTTTCCATCGCAATTCCCCGACGACCTTGGCGGGAATGTTAACGG
CTGAACAGGCGGAGAAGTTGCCGCCGTGTTTGATATTGCATGGGGTGGAG
GATGAGACCGTGCCGTTCACGAGTTCGTTAGTGTTTGCGAATTGTTTGGA
GGGACATGGAGGGAGGGTGAAGACGGGATGGCTCCCTGGGATGGACCACC
AGGGGACGGTGGCAGTGCTGATGATGGGGAGGGACTCGGAGGTGGAGCGG
CAGATAGCCGCGTTTTCGGGGGGGAAAGGAGGGAGGAAGGGGGAGGAAGG
AGTGGCGCCCATGGCGAGGTTGTAAATGGTAGTCCCCAAGCTCTTGCCAT
ACGACGTCCACGAGCCGCCCAAGGGCTTCAACTCTTTCACCGCCAAGGCC
CATGAGCTAATTCCCTTGAGCGCACAGCGGGCCTTCCGCGATCGGCATGC
TCATTGGTTTGATCGGGCCGTGTCGGTCTCCGCCGTTGCCTTGGCGGCTC
GCCACCCGAAGGCCCTGCTTCGCTTCCTGGCGCTGCGTCGCTCGGCACAA
GTCTTTCAGTACGGCCTCGAGTCGTCTCAGCAGGTCGTCGAGCTGCATCA
ATGCGGGAAGCAAGGCGCGCCTGTGGTGATTTTCATGCACGGTGGGGCGT
GGTTCAGCGGTCGGCCGTGGATGTATCGCTTGATTGCGACGGCCCTGAAT
CGACAAGGGTTGGACGTAGGCATTGTGGGCTATGGGACTTACAAAACCTT
GCCCCCCATACCGGGTACGCTGTTGCCTGACCCGGCTTTGGAAGGGATAG
GCGATTTTTCCGTGGTGCTAGGAAATGTGGACCATCAAATCGACGACCTG
CAGCACTGTCTGGAATTCCTCATGACGGACCCTCGCAGCCCCTATAGCAT
TGATGACACGCCCATTTTCCTTTCCGGACACTCGTCCGGGGCGCATGTCT
GTAGCCTCTTGCTCCTCCGCCAAGCCCTGGGGCTACCTGGTCATGCCACC
CTCCCTCGGCCCATCGCGGGTTTCATCGGACTTAGTGGTGTGTACGACGT
GGCGGCCCACCACGAGTATGAAGCACGGAGAGGAGTCCACGAAATTTCGG
GCATGGGCCCATGTAACGGTGGCCTGGCCGGTTTCCATCGCAATTCCCCG
ACGACCTTGGCGGGAATGTTAACGGCTGAACAGGCGGAGAAGTTGCCGCC
GTGTTTGATATTGCATGGGGTGGAGGATGAGACCGTGCCGTTCACGAGTT
CGTTAGTGTTTGCGAATTGTTTGGAGGGACATGGAGGGAGGGTGAAGACG
GGATGGCTCCCTGGGATGGACCACCAGGGGACGGTGGCAGTGCTGATGAT
GGGGAGGGACTCGGAGGTGGAGCGGCAGATAGCCGCGTTTTCGGGGGGGA
AAGGAGGGAGGAAGGGGGAGGAAGGAGTGGCGCCCATGGCGAGGTTGTAA

Synonyms

Publications