jgi.p|Nanoce1779_2|573688, mRNA_660 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573688
Unique NamemRNA_660
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length720
Alignment locationscaffold_2:126045..126764 +

Link to JBrowse

Properties
Property NameValue
TranscriptId573774
TrackFilteredModels2
ProteinId573688
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:126045..126764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573688gene_660Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573688mRNA_660-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_660CDS_660Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_660 ID=mRNA_660|Name=jgi.p|Nanoce1779_2|573688|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
TCGAGCTTGTGGGTCGTACTTATGCTTTTCGATTGCTCCTTTTTGAATCC
CCACGCGGCTTGGGGCCCTGGTCTTTTTCTCTCTCCTTCCCCTCCTGTGA
GTGCATTTCCCCTCTGCACGTGTTTTCTATCTCCCCTTGGGGTTTGTGCT
TGCCCCTTGGCCACAGAGCAACGACACAATCACGTGCTGTTTCTTGTCTT
TCTCTTTTCTCTTTTCTCCTTTCTCCTCACTCTTATTCCTCTTTTCCTCC
TTGTCGGCACCAGGACAGTCGTGTGAGAAATAAATAGTAGTAAATAACCT
TCCCTATCTTCTCAATTTCGATCTCCGTTTTGATTGTCCTCAATTTCGTT
CTCCGTTTTAATTGTCCATCCCCTCTCCTACTTCTCTTCCTCCCTCCAGC
TCTTCATTTGATTCGAATACAACCAATAGAAAAGACTTCACCACAGGCAC
TAAAATCTCCTCCTCTTTATCCTATCCCTTCGTTCTCCTTATCGTTCTCC
TTATTTTCCAACAAACTAAGTTTTACACACCACAGGCCCCATTTCCTTCC
GTTCTCATCCCTCCTTCCCCCCCTTCGTTCTTCCAGACGTGGAATAAGAC
CTGCCGTATTATTCCTCAACGACAAGGCAACACTCTTCACCCACTCTTTC
TCCCTCCCTCCAGCACGCTGTACCGAGATAATGCACGATCCAGTGACAAG
GCCCTGTGTATTCCCCCCTT
back to top

protein sequence of jgi.p|Nanoce1779_2|573688

>mRNA_660-protein ID=mRNA_660-protein|Name=jgi.p|Nanoce1779_2|573688|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MLFDCSFLNPHAAWGPGLFLSPSPPVSAFPLCTCFLSPLGVCACPLATEQ
RHNHVLFLVFLFSLFSFLLTLIPLFLLVGTRTVV*
back to top

mRNA from alignment at scaffold_2:126045..126764+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_660 ID=mRNA_660|Name=jgi.p|Nanoce1779_2|573688|organism=Nannochloropsis oceanica|type=mRNA|length=720bp|location=Sequence derived from alignment at scaffold_2:126045..126764+ (Nannochloropsis oceanica)
TCGAGCTTGTGGGTCGTACTTATGCTTTTCGATTGCTCCTTTTTGAATCC
CCACGCGGCTTGGGGCCCTGGTCTTTTTCTCTCTCCTTCCCCTCCTGTGA
GTGCATTTCCCCTCTGCACGTGTTTTCTATCTCCCCTTGGGGTTTGTGCT
TGCCCCTTGGCCACAGAGCAACGACACAATCACGTGCTGTTTCTTGTCTT
TCTCTTTTCTCTTTTCTCCTTTCTCCTCACTCTTATTCCTCTTTTCCTCC
TTGTCGGCACCAGGACAGTCGTGTGAGAAATAAATAGTAGTAAATAACCT
TCCCTATCTTCTCAATTTCGATCTCCGTTTTGATTGTCCTCAATTTCGTT
CTCCGTTTTAATTGTCCATCCCCTCTCCTACTTCTCTTCCTCCCTCCAGC
TCTTCATTTGATTCGAATACAACCAATAGAAAAGACTTCACCACAGGCAC
TAAAATCTCCTCCTCTTTATCCTATCCCTTCGTTCTCCTTATCGTTCTCC
TTATTTTCCAACAAACTAAGTTTTACACACCACAGGCCCCATTTCCTTCC
GTTCTCATCCCTCCTTCCCCCCCTTCGTTCTTCCAGACGTGGAATAAGAC
CTGCCGTATTATTCCTCAACGACAAGGCAACACTCTTCACCCACTCTTTC
TCCCTCCCTCCAGCACGCTGTACCGAGATAATGCACGATCCAGTGACAAG
GCCCTGTGTATTCCCCCCTT
back to top

Coding sequence (CDS) from alignment at scaffold_2:126045..126764+

>mRNA_660 ID=mRNA_660|Name=jgi.p|Nanoce1779_2|573688|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_2:126045..126764+ (Nannochloropsis oceanica)
ATGCTTTTCGATTGCTCCTTTTTGAATCCCCACGCGGCTTGGGGCCCTGG
TCTTTTTCTCTCTCCTTCCCCTCCTGTGAGTGCATTTCCCCTCTGCACGT
GTTTTCTATCTCCCCTTGGGGTTTGTGCTTGCCCCTTGGCCACAGAGCAA
CGACACAATCACGTGCTGTTTCTTGTCTTTCTCTTTTCTCTTTTCTCCTT
TCTCCTCACTCTTATTCCTCTTTTCCTCCTTGTCGGCACCAGGACAGTCG
TGTGA
back to top
Synonyms
Publications