jgi.p|Nanoce1779_2|597444, mRNA_6599 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597444
Unique NamemRNA_6599
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1724
Alignment locationscaffold_18:234470..236193 -

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Properties
Property NameValue
TranscriptId597530
TrackFilteredModels2
ProteinId597444
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:234470..236193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597444gene_6599Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597444mRNA_6599-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6599CDS_6599Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6599 ID=mRNA_6599|Name=jgi.p|Nanoce1779_2|597444|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp
AGGCTATCTATCACAATCTCCGTCGTCTTTCGCCGACCCTCCCTGCAACG
AGGAATCCTGCCGCAGCCAATCCTGCGCCCTTTCCTCTACCTTCCAACCG
TGTTGTTGCTACTCAGCCGCGTGCCGTCTTTCGTCGCCGCCAGTGCTATC
TCTCGCTGGACGCTCGCCCCCTCTACAGCCTCAGCCGTTGCCACTGCCTT
CGTCTTCGCGCCTCATCTCAGTCGACGTAGACCGTCTCGCAGATATCGGT
CTTTTACAACATCTAACAACCCTTCAAGTATCCCTCTTTATCGCGAAGAG
GACTCAACGCCCCGTAGGCCCTTTGACATCGAATTACTTTTCACCATGGC
TACCCCTTCTTCCGACAATATCATCGACGGCAAGGCAATCGCAGAGGTGA
TCCGAGGAGAGATTAAGGACGAGTGCACCGCCCTATTGGCATCTTCGGAC
GTGAAGCCCGGCTTGGCTGTTGTGCTTGTGGGGAACCGTACGGACTCCGC
GACCTACGTCCGAATGAAGATCAAGGCTTGTGAGGAGGTGGGGATCAATT
CGTTCAAATTCGAGTTCCCCGAAGATGTGACCGAGGCAGATTTGATCGCC
AAAGTTGAAGAATTGAATGCTGACCCAGCCGTGCATGGTATTTTGGTACA
GCTGCCCATTCCTCCTCACATTCATGAGCAGAAGGTCTTGGACACAATCC
TGCCTGACAAGGACGTCGATGGTCTCCACCCTTTGAATCTGGCCAAGCTG
GCGCATACCAATACGCATGGATCCAAGGGGAAATTTGACTTAAAGGCGTT
GCCTTTCCACGCGGCCTGCACGCCCCAAGGGTGTATTGAGCTGATCGAGA
GGTCCGGGATGGTGATTGAAGGCAAAGAAGCCGTAGTCATTGGGAGGAGT
AACATTGTTGGGATCCCCGTCTCTCTCCTTCTGATGCAAAAGAATGCAAC
CGTGACGATCGTGCACTCGCGAACAAAGGACGCGGCGGCGGTTTGCAAAC
GCGCGGATATCATCGTGGCAGCCGTTGGGCGGGCGGAGATGGTCAAGGCC
GACTTTGTGAAGCCGGGGGCGGTGGTGATTGATGTGGGAATCAACAGTGT
TGATGATCCGACGAGCAAGAGGGGGTATAAATTGGTGGGGGACGTTGATT
TTGAAGGCTGTAAGACGGTGGCGGGAAAGATAACCCCGGTGCCCGGGGGT
GTTGGCCCGATGACGATTGCGATGCTATTGAGGAATACGCTGCAGGGGGC
GAAGAGGAAGGCGCAAGAGGGGAAGTAGAATGAGTATTAGATGAGAAGGA
TGGGGGAAAGGGAGGAAGGTTAAGTAGGAATAGGCGCTGGTCGTCTCGGT
GCTTGGTGCACTTTGTGTTTTCTTGTCTGACGTCAGACAGAGATATATAG
AGTGGGAGGGAGTAGAGGGGGAACAAGGAACGGTAATTGATGCGCTCGGA
TCGTCGTCCTTGCTACATAATCGTGTAGTTTTTATTTCAATTGTAGCCTT
TGCATTTTGGGATGTATGTGAGTTTGTGTGCTCTAGGCAAGGTTTAAAGG
AGAGGTGGGGAAAAGAGGGGATGGTATTGTTCCAATCAGGGAAGGAAGGA
GTTGGCTTAAGAACATGAATGGGAAAGCTAAGAAAGAGAAGAGAGAGAAA
GGATTGGATCGGTAAAGCAAGGACACTGCCAAGAGGAGAAGAATATTATC
ACAGACCAACACTCACACTACTAA
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protein sequence of jgi.p|Nanoce1779_2|597444

>mRNA_6599-protein ID=mRNA_6599-protein|Name=jgi.p|Nanoce1779_2|597444|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MATPSSDNIIDGKAIAEVIRGEIKDECTALLASSDVKPGLAVVLVGNRTD
SATYVRMKIKACEEVGINSFKFEFPEDVTEADLIAKVEELNADPAVHGIL
VQLPIPPHIHEQKVLDTILPDKDVDGLHPLNLAKLAHTNTHGSKGKFDLK
ALPFHAACTPQGCIELIERSGMVIEGKEAVVIGRSNIVGIPVSLLLMQKN
ATVTIVHSRTKDAAAVCKRADIIVAAVGRAEMVKADFVKPGAVVIDVGIN
SVDDPTSKRGYKLVGDVDFEGCKTVAGKITPVPGGVGPMTIAMLLRNTLQ
GAKRKAQEGK*
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mRNA from alignment at scaffold_18:234470..236193-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6599 ID=mRNA_6599|Name=jgi.p|Nanoce1779_2|597444|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp|location=Sequence derived from alignment at scaffold_18:234470..236193- (Nannochloropsis oceanica)
AGGCTATCTATCACAATCTCCGTCGTCTTTCGCCGACCCTCCCTGCAACG
AGGAATCCTGCCGCAGCCAATCCTGCGCCCTTTCCTCTACCTTCCAACCG
TGTTGTTGCTACTCAGCCGCGTGCCGTCTTTCGTCGCCGCCAGTGCTATC
TCTCGCTGGACGCTCGCCCCCTCTACAGCCTCAGCCGTTGCCACTGCCTT
CGTCTTCGCGCCTCATCTCAGTCGACGTAGACCGTCTCGCAGATATCGGT
CTTTTACAACATCTAACAACCCTTCAAGTATCCCTCTTTATCGCGAAGAG
GACTCAACGCCCCGTAGGCCCTTTGACATCGAATTACTTTTCACCATGGC
TACCCCTTCTTCCGACAATATCATCGACGGCAAGGCAATCGCAGAGGTGA
TCCGAGGAGAGATTAAGGACGAGTGCACCGCCCTATTGGCATCTTCGGAC
GTGAAGCCCGGCTTGGCTGTTGTGCTTGTGGGGAACCGTACGGACTCCGC
GACCTACGTCCGAATGAAGATCAAGGCTTGTGAGGAGGTGGGGATCAATT
CGTTCAAATTCGAGTTCCCCGAAGATGTGACCGAGGCAGATTTGATCGCC
AAAGTTGAAGAATTGAATGCTGACCCAGCCGTGCATGGTATTTTGGTACA
GCTGCCCATTCCTCCTCACATTCATGAGCAGAAGGTCTTGGACACAATCC
TGCCTGACAAGGACGTCGATGGTCTCCACCCTTTGAATCTGGCCAAGCTG
GCGCATACCAATACGCATGGATCCAAGGGGAAATTTGACTTAAAGGCGTT
GCCTTTCCACGCGGCCTGCACGCCCCAAGGGTGTATTGAGCTGATCGAGA
GGTCCGGGATGGTGATTGAAGGCAAAGAAGCCGTAGTCATTGGGAGGAGT
AACATTGTTGGGATCCCCGTCTCTCTCCTTCTGATGCAAAAGAATGCAAC
CGTGACGATCGTGCACTCGCGAACAAAGGACGCGGCGGCGGTTTGCAAAC
GCGCGGATATCATCGTGGCAGCCGTTGGGCGGGCGGAGATGGTCAAGGCC
GACTTTGTGAAGCCGGGGGCGGTGGTGATTGATGTGGGAATCAACAGTGT
TGATGATCCGACGAGCAAGAGGGGGTATAAATTGGTGGGGGACGTTGATT
TTGAAGGCTGTAAGACGGTGGCGGGAAAGATAACCCCGGTGCCCGGGGGT
GTTGGCCCGATGACGATTGCGATGCTATTGAGGAATACGCTGCAGGGGGC
GAAGAGGAAGGCGCAAGAGGGGAAGTAGAATGAGTATTAGATGAGAAGGA
TGGGGGAAAGGGAGGAAGGTTAAGTAGGAATAGGCGCTGGTCGTCTCGGT
GCTTGGTGCACTTTGTGTTTTCTTGTCTGACGTCAGACAGAGATATATAG
AGTGGGAGGGAGTAGAGGGGGAACAAGGAACGGTAATTGATGCGCTCGGA
TCGTCGTCCTTGCTACATAATCGTGTAGTTTTTATTTCAATTGTAGCCTT
TGCATTTTGGGATGTATGTGAGTTTGTGTGCTCTAGGCAAGGTTTAAAGG
AGAGGTGGGGAAAAGAGGGGATGGTATTGTTCCAATCAGGGAAGGAAGGA
GTTGGCTTAAGAACATGAATGGGAAAGCTAAGAAAGAGAAGAGAGAGAAA
GGATTGGATCGGTAAAGCAAGGACACTGCCAAGAGGAGAAGAATATTATC
ACAGACCAACACTCACACTACTAA
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Coding sequence (CDS) from alignment at scaffold_18:234470..236193-

>mRNA_6599 ID=mRNA_6599|Name=jgi.p|Nanoce1779_2|597444|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at scaffold_18:234470..236193- (Nannochloropsis oceanica)
ATGGCTACCCCTTCTTCCGACAATATCATCGACGGCAAGGCAATCGCAGA
GGTGATCCGAGGAGAGATTAAGGACGAGTGCACCGCCCTATTGGCATCTT
CGGACGTGAAGCCCGGCTTGGCTGTTGTGCTTGTGGGGAACCGTACGGAC
TCCGCGACCTACGTCCGAATGAAGATCAAGGCTTGTGAGGAGGTGGGGAT
CAATTCGTTCAAATTCGAGTTCCCCGAAGATGTGACCGAGGCAGATTTGA
TCGCCAAAGTTGAAGAATTGAATGCTGACCCAGCCGTGCATGGTATTTTG
GTACAGCTGCCCATTCCTCCTCACATTCATGAGCAGAAGGTCTTGGACAC
AATCCTGCCTGACAAGGACGTCGATGGTCTCCACCCTTTGAATCTGGCCA
AGCTGGCGCATACCAATACGCATGGATCCAAGGGGAAATTTGACTTAAAG
GCGTTGCCTTTCCACGCGGCCTGCACGCCCCAAGGGTGTATTGAGCTGAT
CGAGAGGTCCGGGATGGTGATTGAAGGCAAAGAAGCCGTAGTCATTGGGA
GGAGTAACATTGTTGGGATCCCCGTCTCTCTCCTTCTGATGCAAAAGAAT
GCAACCGTGACGATCGTGCACTCGCGAACAAAGGACGCGGCGGCGGTTTG
CAAACGCGCGGATATCATCGTGGCAGCCGTTGGGCGGGCGGAGATGGTCA
AGGCCGACTTTGTGAAGCCGGGGGCGGTGGTGATTGATGTGGGAATCAAC
AGTGTTGATGATCCGACGAGCAAGAGGGGGTATAAATTGGTGGGGGACGT
TGATTTTGAAGGCTGTAAGACGGTGGCGGGAAAGATAACCCCGGTGCCCG
GGGGTGTTGGCCCGATGACGATTGCGATGCTATTGAGGAATACGCTGCAG
GGGGCGAAGAGGAAGGCGCAAGAGGGGAAGTAG
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Synonyms
Publications