jgi.p|Nanoce1779_2|597437, mRNA_6597 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597437
Unique Name	mRNA_6597
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2127
Alignment location	scaffold_18:228028..230154 -

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Properties


Property Name	Value
TranscriptId	597523
Track	FilteredModels2
ProteinId	597437

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:228028..230154 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597437	gene_6597	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597437	mRNA_6597-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6597	CDS_6597	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:228028..230154-
coding sequence from alignment at scaffold_18:228028..230154-

mRNA sequence

>mRNA_6597 ID=mRNA_6597|Name=jgi.p|Nanoce1779_2|597437|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp
ACAGCTCCACACACAGCCACACTCTCTCATCAATATGAGTGCCGCGGAAG
CCGAGGCGCATAAGGCAACGGGAAACAAGGCTTTGCAAGCCAAGGAATTT
GACGAGGCTATCGCGGCGTACACCAAGGCCATCGAAGTCAGTGCCTGCCT
CCCCGTCTCGGGTGAGGGCGCCGCCCCCCGGCATGTCTACTTCTCGAACC
GCTCTGCCGCTTACTTATCCAAGAACGATACTGTCGCTGCCTTAGAAGAT
GCGGAGCAATGCATTCAAGCCAACCCCACGTGGCCGAAGGGTTTCTCTCG
CAAGGGTGCAGCGCTTCACGCAATGAAGAAATACGACGAAGCGCAGGCCG
CTTACGAGGCCGGCCTGGAGGTGGCCCCCGAAGATGCTGGTCTCGCCGCG
GCACTGGACGATGTAAAGAAGGCCAAACAAGGAAACCAGCCGCGGGCTAA
CCCGCTTGCGTCGATTTTTGCGCCGGAGAACGTGGCACGCTTGTTGACCC
ATCCCGTATTTTGCAAGTACATGATGGACGAGGATTTCAAGGCCAAGATG
CACTTATTGCAGACGGACCCGAGTGCGATCAGCACAATTCTGCAGGATAA
ACGGGTGATGGAGGTTTTTGGGTTCTTGACCGGGATTGACATGCGCGCAG
GAGGGATGGAGGGCGAAGAGGAGGAGTCATCCGCGTACGGCAGCAGCAGC
AATAGCAGCTGCAGCGACAACAAGAAGCAGGAACCTCCCACCCCGGCGCC
CGAACCCGCAGACGAGGACCTGACAGAGGCTGAGCGGGAATTGCGCAAAC
GGAAGCGGGAGGCGCTGGAGGCGAAGGAGCGCGGGAATAAGCATTATGTG
AAGAAGGAGTTCAGTGAGGCGCTGGCGGCGTATGAAGAGGCAATCGAGAA
AGATCCGAGCAATATGGCGTTTTTGACGAATAAAGCCGCGGTATTTTATG
AGCAGGGGGAATACGCCCAGGCGGTGTCGCAGTGCGAGGAGGCGATCCAG
GTGGGGAGGAGTCACAGGGCGCCATACGCTGATGTGGGGAAGGCGTTAGT
GAGGAAGGGGAAGGCATTGGTTAAGATGGGGGATTTGGCCGGCGCAGTGG
AAGCTTTTAAGAATGCGCAGATGGAGCATTTTGATAAGACGGTGGAGAGG
TTGATCAAGACCACGGAGGTGGAGAGGAAGAAGATGGAGGAGGCGGCGTA
TGTGGATCCTACGAAGGCGGTGGAAGCGAAGGATAGGGGGAATGAAGCTT
TCCGCGCTGGACGGTGGCCGGACGCGGTGAAGGAGTACGAGGAGGCTATC
AAAAGGGACCCGACGAATGCGGCCTATCACAATAATTTAGCGGCGGCGCT
GTCGAAGCTGATGGATTTCCCGGCGGCCAAGGCGGCGTGTGAGAAAGCTA
TTGCACTAGATGCCAAGTATGTCAAGGCATGGGCTAAAAAAGGTGACATT
GAATTTTTCATGAAGGAGTACCATCGGGCACTTGAAAGCTACAAGCATGG
AATGAAAATTGAGCCAAACAACAGCTTGTGTGTGCAGGGGCTGCAGAAGA
CGATGATGAAGATTCGGGAGTCGTCGTCGGAAGAGGCAGACATGGAGCGC
GCGGCCCACGGTATGGCTGATCCTGAGATTCAGGCGATTTTGAGCGACCC
TGTTATTCAGCAGGTTCTGCGGGACGTACAGGAGAATCCGAGGGAAGGAC
AGAAGGCAATGAGCGACCCGGGGGTGGCGGCTAAGATTGAGAAGCTTATT
AATGCGGGGGTACTGAGGACGAGGTAGAGGTAGAGGGTGGTTGTTTGGGT
AGGGGAAAGGACAATAGGATGGGGGTAGGGGGAGAAGGAGGGAAGAAGAG
TACAGAAATGAGTGGTACGATTTGCGCCTGCGCGTTATTTGTCGGACGGA
AGGGAGAATTAGGGAGTAACAAGATGACCGGATTGCAGGTCAGAAGGGTG
GGAGGTTGGATTTTCGAATTGGTAAATCGAACCCCTCATCCTCAAATGCG
AACCCGGTAGAGGAAAAAAAAGATGGATGGAGCTTTACGTGAGTCACTGA
GCCTTATTGTACTTGTGCTTTCTGCGTAAATGTCTCGCCTAAGATAAAGA
ATGGAAAGTGTGGATGCGTGTGTTCTC

protein sequence of jgi.p|Nanoce1779_2|597437

>mRNA_6597-protein ID=mRNA_6597-protein|Name=jgi.p|Nanoce1779_2|597437|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MSAAEAEAHKATGNKALQAKEFDEAIAAYTKAIEVSACLPVSGEGAAPRH
VYFSNRSAAYLSKNDTVAALEDAEQCIQANPTWPKGFSRKGAALHAMKKY
DEAQAAYEAGLEVAPEDAGLAAALDDVKKAKQGNQPRANPLASIFAPENV
ARLLTHPVFCKYMMDEDFKAKMHLLQTDPSAISTILQDKRVMEVFGFLTG
IDMRAGGMEGEEEESSAYGSSSNSSCSDNKKQEPPTPAPEPADEDLTEAE
RELRKRKREALEAKERGNKHYVKKEFSEALAAYEEAIEKDPSNMAFLTNK
AAVFYEQGEYAQAVSQCEEAIQVGRSHRAPYADVGKALVRKGKALVKMGD
LAGAVEAFKNAQMEHFDKTVERLIKTTEVERKKMEEAAYVDPTKAVEAKD
RGNEAFRAGRWPDAVKEYEEAIKRDPTNAAYHNNLAAALSKLMDFPAAKA
ACEKAIALDAKYVKAWAKKGDIEFFMKEYHRALESYKHGMKIEPNNSLCV
QGLQKTMMKIRESSSEEADMERAAHGMADPEIQAILSDPVIQQVLRDVQE
NPREGQKAMSDPGVAAKIEKLINAGVLRTR*

mRNA from alignment at scaffold_18:228028..230154-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6597 ID=mRNA_6597|Name=jgi.p|Nanoce1779_2|597437|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp|location=Sequence derived from alignment at scaffold_18:228028..230154- (Nannochloropsis oceanica)
ACAGCTCCACACACAGCCACACTCTCTCATCAATATGAGTGCCGCGGAAG
CCGAGGCGCATAAGGCAACGGGAAACAAGGCTTTGCAAGCCAAGGAATTT
GACGAGGCTATCGCGGCGTACACCAAGGCCATCGAAGTCAGTGCCTGCCT
CCCCGTCTCGGGTGAGGGCGCCGCCCCCCGGCATGTCTACTTCTCGAACC
GCTCTGCCGCTTACTTATCCAAGAACGATACTGTCGCTGCCTTAGAAGAT
GCGGAGCAATGCATTCAAGCCAACCCCACGTGGCCGAAGGGTTTCTCTCG
CAAGGGTGCAGCGCTTCACGCAATGAAGAAATACGACGAAGCGCAGGCCG
CTTACGAGGCCGGCCTGGAGGTGGCCCCCGAAGATGCTGGTCTCGCCGCG
GCACTGGACGATGTAAAGAAGGCCAAACAAGGAAACCAGCCGCGGGCTAA
CCCGCTTGCGTCGATTTTTGCGCCGGAGAACGTGGCACGCTTGTTGACCC
ATCCCGTATTTTGCAAGTACATGATGGACGAGGATTTCAAGGCCAAGATG
CACTTATTGCAGACGGACCCGAGTGCGATCAGCACAATTCTGCAGGATAA
ACGGGTGATGGAGGTTTTTGGGTTCTTGACCGGGATTGACATGCGCGCAG
GAGGGATGGAGGGCGAAGAGGAGGAGTCATCCGCGTACGGCAGCAGCAGC
AATAGCAGCTGCAGCGACAACAAGAAGCAGGAACCTCCCACCCCGGCGCC
CGAACCCGCAGACGAGGACCTGACAGAGGCTGAGCGGGAATTGCGCAAAC
GGAAGCGGGAGGCGCTGGAGGCGAAGGAGCGCGGGAATAAGCATTATGTG
AAGAAGGAGTTCAGTGAGGCGCTGGCGGCGTATGAAGAGGCAATCGAGAA
AGATCCGAGCAATATGGCGTTTTTGACGAATAAAGCCGCGGTATTTTATG
AGCAGGGGGAATACGCCCAGGCGGTGTCGCAGTGCGAGGAGGCGATCCAG
GTGGGGAGGAGTCACAGGGCGCCATACGCTGATGTGGGGAAGGCGTTAGT
GAGGAAGGGGAAGGCATTGGTTAAGATGGGGGATTTGGCCGGCGCAGTGG
AAGCTTTTAAGAATGCGCAGATGGAGCATTTTGATAAGACGGTGGAGAGG
TTGATCAAGACCACGGAGGTGGAGAGGAAGAAGATGGAGGAGGCGGCGTA
TGTGGATCCTACGAAGGCGGTGGAAGCGAAGGATAGGGGGAATGAAGCTT
TCCGCGCTGGACGGTGGCCGGACGCGGTGAAGGAGTACGAGGAGGCTATC
AAAAGGGACCCGACGAATGCGGCCTATCACAATAATTTAGCGGCGGCGCT
GTCGAAGCTGATGGATTTCCCGGCGGCCAAGGCGGCGTGTGAGAAAGCTA
TTGCACTAGATGCCAAGTATGTCAAGGCATGGGCTAAAAAAGGTGACATT
GAATTTTTCATGAAGGAGTACCATCGGGCACTTGAAAGCTACAAGCATGG
AATGAAAATTGAGCCAAACAACAGCTTGTGTGTGCAGGGGCTGCAGAAGA
CGATGATGAAGATTCGGGAGTCGTCGTCGGAAGAGGCAGACATGGAGCGC
GCGGCCCACGGTATGGCTGATCCTGAGATTCAGGCGATTTTGAGCGACCC
TGTTATTCAGCAGGTTCTGCGGGACGTACAGGAGAATCCGAGGGAAGGAC
AGAAGGCAATGAGCGACCCGGGGGTGGCGGCTAAGATTGAGAAGCTTATT
AATGCGGGGGTACTGAGGACGAGGTAGAGGTAGAGGGTGGTTGTTTGGGT
AGGGGAAAGGACAATAGGATGGGGGTAGGGGGAGAAGGAGGGAAGAAGAG
TACAGAAATGAGTGGTACGATTTGCGCCTGCGCGTTATTTGTCGGACGGA
AGGGAGAATTAGGGAGTAACAAGATGACCGGATTGCAGGTCAGAAGGGTG
GGAGGTTGGATTTTCGAATTGGTAAATCGAACCCCTCATCCTCAAATGCG
AACCCGGTAGAGGAAAAAAAAGATGGATGGAGCTTTACGTGAGTCACTGA
GCCTTATTGTACTTGTGCTTTCTGCGTAAATGTCTCGCCTAAGATAAAGA
ATGGAAAGTGTGGATGCGTGTGTTCTC

Coding sequence (CDS) from alignment at scaffold_18:228028..230154-

>mRNA_6597 ID=mRNA_6597|Name=jgi.p|Nanoce1779_2|597437|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at scaffold_18:228028..230154- (Nannochloropsis oceanica)
ATGAGTGCCGCGGAAGCCGAGGCGCATAAGGCAACGGGAAACAAGGCTTT
GCAAGCCAAGGAATTTGACGAGGCTATCGCGGCGTACACCAAGGCCATCG
AAGTCAGTGCCTGCCTCCCCGTCTCGGGTGAGGGCGCCGCCCCCCGGCAT
GTCTACTTCTCGAACCGCTCTGCCGCTTACTTATCCAAGAACGATACTGT
CGCTGCCTTAGAAGATGCGGAGCAATGCATTCAAGCCAACCCCACGTGGC
CGAAGGGTTTCTCTCGCAAGGGTGCAGCGCTTCACGCAATGAAGAAATAC
GACGAAGCGCAGGCCGCTTACGAGGCCGGCCTGGAGGTGGCCCCCGAAGA
TGCTGGTCTCGCCGCGGCACTGGACGATGTAAAGAAGGCCAAACAAGGAA
ACCAGCCGCGGGCTAACCCGCTTGCGTCGATTTTTGCGCCGGAGAACGTG
GCACGCTTGTTGACCCATCCCGTATTTTGCAAGTACATGATGGACGAGGA
TTTCAAGGCCAAGATGCACTTATTGCAGACGGACCCGAGTGCGATCAGCA
CAATTCTGCAGGATAAACGGGTGATGGAGGTTTTTGGGTTCTTGACCGGG
ATTGACATGCGCGCAGGAGGGATGGAGGGCGAAGAGGAGGAGTCATCCGC
GTACGGCAGCAGCAGCAATAGCAGCTGCAGCGACAACAAGAAGCAGGAAC
CTCCCACCCCGGCGCCCGAACCCGCAGACGAGGACCTGACAGAGGCTGAG
CGGGAATTGCGCAAACGGAAGCGGGAGGCGCTGGAGGCGAAGGAGCGCGG
GAATAAGCATTATGTGAAGAAGGAGTTCAGTGAGGCGCTGGCGGCGTATG
AAGAGGCAATCGAGAAAGATCCGAGCAATATGGCGTTTTTGACGAATAAA
GCCGCGGTATTTTATGAGCAGGGGGAATACGCCCAGGCGGTGTCGCAGTG
CGAGGAGGCGATCCAGGTGGGGAGGAGTCACAGGGCGCCATACGCTGATG
TGGGGAAGGCGTTAGTGAGGAAGGGGAAGGCATTGGTTAAGATGGGGGAT
TTGGCCGGCGCAGTGGAAGCTTTTAAGAATGCGCAGATGGAGCATTTTGA
TAAGACGGTGGAGAGGTTGATCAAGACCACGGAGGTGGAGAGGAAGAAGA
TGGAGGAGGCGGCGTATGTGGATCCTACGAAGGCGGTGGAAGCGAAGGAT
AGGGGGAATGAAGCTTTCCGCGCTGGACGGTGGCCGGACGCGGTGAAGGA
GTACGAGGAGGCTATCAAAAGGGACCCGACGAATGCGGCCTATCACAATA
ATTTAGCGGCGGCGCTGTCGAAGCTGATGGATTTCCCGGCGGCCAAGGCG
GCGTGTGAGAAAGCTATTGCACTAGATGCCAAGTATGTCAAGGCATGGGC
TAAAAAAGGTGACATTGAATTTTTCATGAAGGAGTACCATCGGGCACTTG
AAAGCTACAAGCATGGAATGAAAATTGAGCCAAACAACAGCTTGTGTGTG
CAGGGGCTGCAGAAGACGATGATGAAGATTCGGGAGTCGTCGTCGGAAGA
GGCAGACATGGAGCGCGCGGCCCACGGTATGGCTGATCCTGAGATTCAGG
CGATTTTGAGCGACCCTGTTATTCAGCAGGTTCTGCGGGACGTACAGGAG
AATCCGAGGGAAGGACAGAAGGCAATGAGCGACCCGGGGGTGGCGGCTAA
GATTGAGAAGCTTATTAATGCGGGGGTACTGAGGACGAGGTAG

Synonyms

Publications