jgi.p|Nanoce1779_2|531073, mRNA_6596 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531073
Unique NamemRNA_6596
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1185
Alignment locationscaffold_18:226325..227509 -

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Properties
Property NameValue
TranscriptId531159
TrackFilteredModels2
ProteinId531073
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:226325..227509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531073gene_6596Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6596CDS_6596Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531073mRNA_6596-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6596 ID=mRNA_6596|Name=jgi.p|Nanoce1779_2|531073|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
ATGCCCCAAGGGCCGCCGCCCACACCGGCCTCAAGGCGCATTCATTCCTA
TCGGGCCCACATTTCCTCTTCCTCGTCCTTTGACAATAAAAAGGAAGCAG
CCACTTCCAAACCCCCTTCCAAGCCTTCAAGAGGACCTCCAGCCACGACA
TCACTCAACGCCAATGACGAAAGCGAGTCCTCCGATTCGGAGGGAGACAA
CGACGAAAGCCCGCCGGGCAACAGTAAGACCTCCCCCCCCACCTCCCTGT
CCCTCAAAAACGACGATGATAGTGGCGTCGATGACAGCATATCCGTTAAT
GCTGCCTTGGCTTTTCAAACTTCAGAATCTACCCGCTCTTTGGACCTGAA
CATCCTCCTAGCCACCCGCGCGGACGTCCGTCGTTTTGTCACTCACCCTA
TCCCCCGCACCGCCGGCGTCGTGCATTGTTATATCAAGCGTCGCAAAGCC
GGGACCGGCAAACTCTATCCCGAGTATCACCTTTATACACGTCAAGGGAG
CCATTTCCTAATGGCGGCCAAGAAACAAGCGAATAACAAGACGTCCAACT
ACCACGTGACGTTAAACGACCGCGATTTCGCGAAGGAAAGCCCCGATTAC
CTAGGGAAGCTCCGTGCAAATTTTGTGGGGACAGAATTCCAGATCTTCGA
CCGCGGAAGCAACGGCAGCACCAACAGCAAAGGTGTAGATGGGGCGGAGG
TACTTGGGCCGAATAGTGGACCGTCAAATGCCAGTGCGCCGAGGGAAGAG
TTAGGGGTGGTGGTGTACGCTGCGAATGTACTAGGTGCGCGAGGTCCCCG
AAAAATGCAAGCATTTTTACCGCGTGTTAGTAAGGTAGACGACCGAATGG
TGGTATGGAAGTCCAAGGAGGATCTGGCGGAGCAGGATGCGATGCTTGAG
AGGGTCCGGAGGGGGGATACGGCGAAGTTTCATCATTTTATTAATAAGCC
CCCTAGGTGGAATGACCAGGTAGGGGCGTACGTGTTGAATTTTATGGGAA
GGGTGACCATGGCTTCGGTGAAGAATTTTCAATTGATTGAGCCTGAAGAC
CATGAGTTGGTGGTGTTACAGTTTGGACGGGTGGGGAGGCACGATTTTAC
AATGGATGTCAGGTGGCCCTTCACACCCCTACAGGCTTTGGCGGTGGCGT
TGAGTTCGTTTGATTCGAAGATTGCGTGTGATTAG
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protein sequence of jgi.p|Nanoce1779_2|531073

>mRNA_6596-protein ID=mRNA_6596-protein|Name=jgi.p|Nanoce1779_2|531073|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MPQGPPPTPASRRIHSYRAHISSSSSFDNKKEAATSKPPSKPSRGPPATT
SLNANDESESSDSEGDNDESPPGNSKTSPPTSLSLKNDDDSGVDDSISVN
AALAFQTSESTRSLDLNILLATRADVRRFVTHPIPRTAGVVHCYIKRRKA
GTGKLYPEYHLYTRQGSHFLMAAKKQANNKTSNYHVTLNDRDFAKESPDY
LGKLRANFVGTEFQIFDRGSNGSTNSKGVDGAEVLGPNSGPSNASAPREE
LGVVVYAANVLGARGPRKMQAFLPRVSKVDDRMVVWKSKEDLAEQDAMLE
RVRRGDTAKFHHFINKPPRWNDQVGAYVLNFMGRVTMASVKNFQLIEPED
HELVVLQFGRVGRHDFTMDVRWPFTPLQALAVALSSFDSKIACD*
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mRNA from alignment at scaffold_18:226325..227509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6596 ID=mRNA_6596|Name=jgi.p|Nanoce1779_2|531073|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_18:226325..227509- (Nannochloropsis oceanica)
ATGCCCCAAGGGCCGCCGCCCACACCGGCCTCAAGGCGCATTCATTCCTA
TCGGGCCCACATTTCCTCTTCCTCGTCCTTTGACAATAAAAAGGAAGCAG
CCACTTCCAAACCCCCTTCCAAGCCTTCAAGAGGACCTCCAGCCACGACA
TCACTCAACGCCAATGACGAAAGCGAGTCCTCCGATTCGGAGGGAGACAA
CGACGAAAGCCCGCCGGGCAACAGTAAGACCTCCCCCCCCACCTCCCTGT
CCCTCAAAAACGACGATGATAGTGGCGTCGATGACAGCATATCCGTTAAT
GCTGCCTTGGCTTTTCAAACTTCAGAATCTACCCGCTCTTTGGACCTGAA
CATCCTCCTAGCCACCCGCGCGGACGTCCGTCGTTTTGTCACTCACCCTA
TCCCCCGCACCGCCGGCGTCGTGCATTGTTATATCAAGCGTCGCAAAGCC
GGGACCGGCAAACTCTATCCCGAGTATCACCTTTATACACGTCAAGGGAG
CCATTTCCTAATGGCGGCCAAGAAACAAGCGAATAACAAGACGTCCAACT
ACCACGTGACGTTAAACGACCGCGATTTCGCGAAGGAAAGCCCCGATTAC
CTAGGGAAGCTCCGTGCAAATTTTGTGGGGACAGAATTCCAGATCTTCGA
CCGCGGAAGCAACGGCAGCACCAACAGCAAAGGTGTAGATGGGGCGGAGG
TACTTGGGCCGAATAGTGGACCGTCAAATGCCAGTGCGCCGAGGGAAGAG
TTAGGGGTGGTGGTGTACGCTGCGAATGTACTAGGTGCGCGAGGTCCCCG
AAAAATGCAAGCATTTTTACCGCGTGTTAGTAAGGTAGACGACCGAATGG
TGGTATGGAAGTCCAAGGAGGATCTGGCGGAGCAGGATGCGATGCTTGAG
AGGGTCCGGAGGGGGGATACGGCGAAGTTTCATCATTTTATTAATAAGCC
CCCTAGGTGGAATGACCAGGTAGGGGCGTACGTGTTGAATTTTATGGGAA
GGGTGACCATGGCTTCGGTGAAGAATTTTCAATTGATTGAGCCTGAAGAC
CATGAGTTGGTGGTGTTACAGTTTGGACGGGTGGGGAGGCACGATTTTAC
AATGGATGTCAGGTGGCCCTTCACACCCCTACAGGCTTTGGCGGTGGCGT
TGAGTTCGTTTGATTCGAAGATTGCGTGTGATTAG
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Coding sequence (CDS) from alignment at scaffold_18:226325..227509-

>mRNA_6596 ID=mRNA_6596|Name=jgi.p|Nanoce1779_2|531073|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at scaffold_18:226325..227509- (Nannochloropsis oceanica)
ATGCCCCAAGGGCCGCCGCCCACACCGGCCTCAAGGCGCATTCATTCCTA
TCGGGCCCACATTTCCTCTTCCTCGTCCTTTGACAATAAAAAGGAAGCAG
CCACTTCCAAACCCCCTTCCAAGCCTTCAAGAGGACCTCCAGCCACGACA
TCACTCAACGCCAATGACGAAAGCGAGTCCTCCGATTCGGAGGGAGACAA
CGACGAAAGCCCGCCGGGCAACAGTAAGACCTCCCCCCCCACCTCCCTGT
CCCTCAAAAACGACGATGATAGTGGCGTCGATGACAGCATATCCGTTAAT
GCTGCCTTGGCTTTTCAAACTTCAGAATCTACCCGCTCTTTGGACCTGAA
CATCCTCCTAGCCACCCGCGCGGACGTCCGTCGTTTTGTCACTCACCCTA
TCCCCCGCACCGCCGGCGTCGTGCATTGTTATATCAAGCGTCGCAAAGCC
GGGACCGGCAAACTCTATCCCGAGTATCACCTTTATACACGTCAAGGGAG
CCATTTCCTAATGGCGGCCAAGAAACAAGCGAATAACAAGACGTCCAACT
ACCACGTGACGTTAAACGACCGCGATTTCGCGAAGGAAAGCCCCGATTAC
CTAGGGAAGCTCCGTGCAAATTTTGTGGGGACAGAATTCCAGATCTTCGA
CCGCGGAAGCAACGGCAGCACCAACAGCAAAGGTGTAGATGGGGCGGAGG
TACTTGGGCCGAATAGTGGACCGTCAAATGCCAGTGCGCCGAGGGAAGAG
TTAGGGGTGGTGGTGTACGCTGCGAATGTACTAGGTGCGCGAGGTCCCCG
AAAAATGCAAGCATTTTTACCGCGTGTTAGTAAGGTAGACGACCGAATGG
TGGTATGGAAGTCCAAGGAGGATCTGGCGGAGCAGGATGCGATGCTTGAG
AGGGTCCGGAGGGGGGATACGGCGAAGTTTCATCATTTTATTAATAAGCC
CCCTAGGTGGAATGACCAGGTAGGGGCGTACGTGTTGAATTTTATGGGAA
GGGTGACCATGGCTTCGGTGAAGAATTTTCAATTGATTGAGCCTGAAGAC
CATGAGTTGGTGGTGTTACAGTTTGGACGGGTGGGGAGGCACGATTTTAC
AATGGATGTCAGGTGGCCCTTCACACCCCTACAGGCTTTGGCGGTGGCGT
TGAGTTCGTTTGATTCGAAGATTGCGTGTGATTAG
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Synonyms
Publications