jgi.p|Nanoce1779_2|597435, mRNA_6595 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597435
Unique NamemRNA_6595
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length992
Alignment locationscaffold_18:225258..226249 +

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Properties
Property NameValue
TranscriptId597521
TrackFilteredModels2
ProteinId597435
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:225258..226249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597435gene_6595Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597435mRNA_6595-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6595CDS_6595Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6595 ID=mRNA_6595|Name=jgi.p|Nanoce1779_2|597435|organism=Nannochloropsis oceanica|type=mRNA|length=992bp
AACAGACAGGTGCCACACCACACTTCGCTCTTGGCGCAAACCACACCATG
GCGCTATCAATGAAGGGGTCGCGCCGCGCCTTGATCACGGGCGCGGGTAG
TGGTATCGGGGAGGGTATTGCTATCTCCTTGGCCATTGAGCATGGGTGGG
AGATCATCGCTACGGATTTGAATTTCGAGGCGGCACAAGGAACGGCTGCG
CAGATAAAGGCCCGGGGCGGCGAGGCCGAGGCATATGCGCTCAATGTAGC
CGACAACTCTCAGATAACGGCACTCGTTGAGGAGCTCAAGGCGGGACGAA
AACGAATTGATGTGTTGGTCAACAACGCAGGATTGCAGCACGTAGCGCGC
TTGGAAGATTTCCCGTCGGAGAAGTGGGGGTTTATGATCCAAGTCATGCT
CACGGGGGTGGCCGACTTGACCCGGTCCATCTTGCCTATCATGCGTAAGC
AAGGCTTCGGCCGCATTGTGAACATTGGTTCTATCCACAGTGTGATTGCG
TCTCCATACAAGTCTGCATACGTGGCGGCGAAACACGGTTTGATTGGCTT
TTCTAAGGTCATGGCTTTGGAGACCAGTGACGTCGACGTCACAATCAATA
CTATCTGTCCTTCATATGTCAAAACACCCTTGGTGGATTCTCAAATTGCT
AACCAGGCCAAGACTCATGGGATTAGTGAGGAGGATGTGATCAATAAAAT
TATGCTTGAACCCATGCCGAAAAAAGCGTTTATCTCGATGGAGGAGCTGG
TGGGGACAACGGTATTTTTGTCGTCCAACGCTGCGAGGAATATGACGGGG
CAGGCGTTGGTATTGGATGGGGGTTGGACAGTACGTTAATATATATCATT
TAAAGAAAGGAAGTACGTGGTGTGCACGTAAGAATTATGACTCGGTAGGC
GAGAGGATATACGCGAAGGGAAAGGTTGGTTTGCTTATGGGAGAGCGCGC
CTTTAAACAAAAATGAACAGGCGAACAACAAACGTTGCTGTG
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protein sequence of jgi.p|Nanoce1779_2|597435

>mRNA_6595-protein ID=mRNA_6595-protein|Name=jgi.p|Nanoce1779_2|597435|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MALSMKGSRRALITGAGSGIGEGIAISLAIEHGWEIIATDLNFEAAQGTA
AQIKARGGEAEAYALNVADNSQITALVEELKAGRKRIDVLVNNAGLQHVA
RLEDFPSEKWGFMIQVMLTGVADLTRSILPIMRKQGFGRIVNIGSIHSVI
ASPYKSAYVAAKHGLIGFSKVMALETSDVDVTINTICPSYVKTPLVDSQI
ANQAKTHGISEEDVINKIMLEPMPKKAFISMEELVGTTVFLSSNAARNMT
GQALVLDGGWTVR*
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mRNA from alignment at scaffold_18:225258..226249+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6595 ID=mRNA_6595|Name=jgi.p|Nanoce1779_2|597435|organism=Nannochloropsis oceanica|type=mRNA|length=992bp|location=Sequence derived from alignment at scaffold_18:225258..226249+ (Nannochloropsis oceanica)
AACAGACAGGTGCCACACCACACTTCGCTCTTGGCGCAAACCACACCATG
GCGCTATCAATGAAGGGGTCGCGCCGCGCCTTGATCACGGGCGCGGGTAG
TGGTATCGGGGAGGGTATTGCTATCTCCTTGGCCATTGAGCATGGGTGGG
AGATCATCGCTACGGATTTGAATTTCGAGGCGGCACAAGGAACGGCTGCG
CAGATAAAGGCCCGGGGCGGCGAGGCCGAGGCATATGCGCTCAATGTAGC
CGACAACTCTCAGATAACGGCACTCGTTGAGGAGCTCAAGGCGGGACGAA
AACGAATTGATGTGTTGGTCAACAACGCAGGATTGCAGCACGTAGCGCGC
TTGGAAGATTTCCCGTCGGAGAAGTGGGGGTTTATGATCCAAGTCATGCT
CACGGGGGTGGCCGACTTGACCCGGTCCATCTTGCCTATCATGCGTAAGC
AAGGCTTCGGCCGCATTGTGAACATTGGTTCTATCCACAGTGTGATTGCG
TCTCCATACAAGTCTGCATACGTGGCGGCGAAACACGGTTTGATTGGCTT
TTCTAAGGTCATGGCTTTGGAGACCAGTGACGTCGACGTCACAATCAATA
CTATCTGTCCTTCATATGTCAAAACACCCTTGGTGGATTCTCAAATTGCT
AACCAGGCCAAGACTCATGGGATTAGTGAGGAGGATGTGATCAATAAAAT
TATGCTTGAACCCATGCCGAAAAAAGCGTTTATCTCGATGGAGGAGCTGG
TGGGGACAACGGTATTTTTGTCGTCCAACGCTGCGAGGAATATGACGGGG
CAGGCGTTGGTATTGGATGGGGGTTGGACAGTACGTTAATATATATCATT
TAAAGAAAGGAAGTACGTGGTGTGCACGTAAGAATTATGACTCGGTAGGC
GAGAGGATATACGCGAAGGGAAAGGTTGGTTTGCTTATGGGAGAGCGCGC
CTTTAAACAAAAATGAACAGGCGAACAACAAACGTTGCTGTG
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Coding sequence (CDS) from alignment at scaffold_18:225258..226249+

>mRNA_6595 ID=mRNA_6595|Name=jgi.p|Nanoce1779_2|597435|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_18:225258..226249+ (Nannochloropsis oceanica)
ATGGCGCTATCAATGAAGGGGTCGCGCCGCGCCTTGATCACGGGCGCGGG
TAGTGGTATCGGGGAGGGTATTGCTATCTCCTTGGCCATTGAGCATGGGT
GGGAGATCATCGCTACGGATTTGAATTTCGAGGCGGCACAAGGAACGGCT
GCGCAGATAAAGGCCCGGGGCGGCGAGGCCGAGGCATATGCGCTCAATGT
AGCCGACAACTCTCAGATAACGGCACTCGTTGAGGAGCTCAAGGCGGGAC
GAAAACGAATTGATGTGTTGGTCAACAACGCAGGATTGCAGCACGTAGCG
CGCTTGGAAGATTTCCCGTCGGAGAAGTGGGGGTTTATGATCCAAGTCAT
GCTCACGGGGGTGGCCGACTTGACCCGGTCCATCTTGCCTATCATGCGTA
AGCAAGGCTTCGGCCGCATTGTGAACATTGGTTCTATCCACAGTGTGATT
GCGTCTCCATACAAGTCTGCATACGTGGCGGCGAAACACGGTTTGATTGG
CTTTTCTAAGGTCATGGCTTTGGAGACCAGTGACGTCGACGTCACAATCA
ATACTATCTGTCCTTCATATGTCAAAACACCCTTGGTGGATTCTCAAATT
GCTAACCAGGCCAAGACTCATGGGATTAGTGAGGAGGATGTGATCAATAA
AATTATGCTTGAACCCATGCCGAAAAAAGCGTTTATCTCGATGGAGGAGC
TGGTGGGGACAACGGTATTTTTGTCGTCCAACGCTGCGAGGAATATGACG
GGGCAGGCGTTGGTATTGGATGGGGGTTGGACAGTACGTTAA
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Synonyms
Publications