jgi.p|Nanoce1779_2|597432, mRNA_6594 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597432
Unique NamemRNA_6594
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1201
Alignment locationscaffold_18:223557..224881 +

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Properties
Property NameValue
TranscriptId597518
TrackFilteredModels2
ProteinId597432
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:223557..224881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597432gene_6594Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597432mRNA_6594-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6594CDS_6594Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6594 ID=mRNA_6594|Name=jgi.p|Nanoce1779_2|597432|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp
AGGACAATAGTTTAAATTTGCTTCAAATCATGCTCAAATGGCTCGTTGTT
GCCCTCGCCATTGTCCTGGCTATTGGCTCAAAGTATGCGAAGAGGAAGCT
TCCCTTGGTGCCCGTCAACTTGGAAGGCAAGCATTTCATTGTCACTGGCG
CCAGTGCCGGTATCGGCAAGGAAACCGTCCGTACCCTAGCACAATGGAAC
GCCAGTGTGGTCATGGCCGTACGTAACACAAACAAGGGTAACGCCGTGCT
GGAGGACATCCGCGCATCGCTTGGAGGAGGCAGTATTCCCGTGGAAGTAT
GGGAGATGGATTTAGCGAAATTTGAATCCGTTCGGGCGTTCGCTGCCAAG
TACCTGGAATCTAGTCGCCCTTTAGATGTTTTGATCAACAATGCGGGGCT
GGTCTCGTGGGATTATATCATAACGGAGGATGGTCATGAGCTCACTCACC
AGACTAATCACCTCGGGCATTTCTTGCTTACCAAGCTTTTGATGGGCCCG
CTCCAGGCCTCGGCGCCCTCGCGAGTGATTCAAGTTTCTTCAGAAGCTCA
CTATATGGGCAAGATCGATTTGGACAACCTCGAATCTTCCAACGAGACCT
ACAATCACTTTGCCACCTATGGCAACACCAAGCTCATGAATGTCCTGTTC
GGCAATGAGCTCAACCGCCGCTTCAAGGACTCAGGCGTTGTCTCCACCTC
CCTCCATCCCGGATTCGTCCAAACGGAGTTCCTGAGAGACGTCCCTGAAT
GGCTGATACCAATCAGCAAAGCTGCATGTGCTTTATTTGCTCGTGATGAA
ATGGAGGGGGCCAAGACCCAGATCATGGCTGCCACGGCACCGGAGTACGA
AAGTGTGGGAGGTGTGTATTTTGATTCGTGTGCGCCAAAGCAACCAAATA
AGCTTGCGTTGGACGAGGCGTTGGCCACGGCATTTTGGGAGAAGTCCGAG
GAGGCTATCAACAAAGTGCTGGTTCGAGATGCGGAGGATTTAGAGGTGCC
GGAAGAGCAGATGGAAGAGGAGGTGTTCAAGGATGCCGTCGAGGCGTAAC
GAGTGATGTGTATTGGCTGAGGCCTGATATGGGAATTCGGAAAATAAAAA
TTTGGACACACAGTACTATGTTGTTTTATCCTAATTGAACTGTTTTCCTT
TCGAACCTTGATCATTCAATGCTGTGTGCAAATATGGGAAATGGGGCTTT
T
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protein sequence of jgi.p|Nanoce1779_2|597432

>mRNA_6594-protein ID=mRNA_6594-protein|Name=jgi.p|Nanoce1779_2|597432|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MLKWLVVALAIVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETV
RTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFES
VRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLL
TKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNT
KLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEWLIPISKAAC
ALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALAT
AFWEKSEEAINKVLVRDAEDLEVPEEQMEEEVFKDAVEA*
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mRNA from alignment at scaffold_18:223557..224881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6594 ID=mRNA_6594|Name=jgi.p|Nanoce1779_2|597432|organism=Nannochloropsis oceanica|type=mRNA|length=1325bp|location=Sequence derived from alignment at scaffold_18:223557..224881+ (Nannochloropsis oceanica)
AGGACAATAGTTTAAATTTGCTTCAAATCATGCTCAAATGGCTCGTTGTT
GCCCTCGCCATTGTCCTGGCTATTGGCTCAAAGTATGCGAAGAGGAAGCT
TCCCTTGGTGCCCGTCAACTTGGAAGGCAAGCATTTCATTGTCACTGGCG
CCAGTGCCGGTATCGGCAAGGAAACCGTCCGTACCCTAGCACAATGGAAC
GCCAGTGTGGTCATGGCCGTACGTAACACAAACAAGGGTAACGCCGTGCT
GGAGGACATCCGCGCATCGCTTGGAGGAGGCAGTATTCCCGTGGAAGTAT
GGGAGATGGATTTAGCGAAATTTGAATCCGTTCGGGCGTTCGCTGCCAAG
TACCTGGAATCTAGTCGCCCTTTAGATGTTTTGATCAACAATGCGGGGCT
GGTCTCGTGGGATTATATCATAACGGAGGATGGTCATGAGCTCACTCACC
AGACTAATCACCTCGGGCATTTCTTGCTTACCAAGCTTTTGATGGGCCCG
CTCCAGGCCTCGGCGCCCTCGCGAGTGATTCAAGTTTCTTCAGAAGCTCA
CTATATGGGCAAGATCGATTTGGGTGAGTCGGAGAGGGGGAGGGGGCAGT
GAGGATGATGGCTTTGCGAAGCATCACCGTTGAAATGCAGCATCCTTCCT
TCCTTCTCTCTTACGTGACCCTGCTTTTTTCACTTTTACCGACACAGACA
ACCTCGAATCTTCCAACGAGACCTACAATCACTTTGCCACCTATGGCAAC
ACCAAGCTCATGAATGTCCTGTTCGGCAATGAGCTCAACCGCCGCTTCAA
GGACTCAGGCGTTGTCTCCACCTCCCTCCATCCCGGATTCGTCCAAACGG
AGTTCCTGAGAGACGTCCCTGAATGGCTGATACCAATCAGCAAAGCTGCA
TGTGCTTTATTTGCTCGTGATGAAATGGAGGGGGCCAAGACCCAGATCAT
GGCTGCCACGGCACCGGAGTACGAAAGTGTGGGAGGTGTGTATTTTGATT
CGTGTGCGCCAAAGCAACCAAATAAGCTTGCGTTGGACGAGGCGTTGGCC
ACGGCATTTTGGGAGAAGTCCGAGGAGGCTATCAACAAAGTGCTGGTTCG
AGATGCGGAGGATTTAGAGGTGCCGGAAGAGCAGATGGAAGAGGAGGTGT
TCAAGGATGCCGTCGAGGCGTAACGAGTGATGTGTATTGGCTGAGGCCTG
ATATGGGAATTCGGAAAATAAAAATTTGGACACACAGTACTATGTTGTTT
TATCCTAATTGAACTGTTTTCCTTTCGAACCTTGATCATTCAATGCTGTG
TGCAAATATGGGAAATGGGGCTTTT
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Coding sequence (CDS) from alignment at scaffold_18:223557..224881+

>mRNA_6594 ID=mRNA_6594|Name=jgi.p|Nanoce1779_2|597432|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_18:223557..224881+ (Nannochloropsis oceanica)
ATGCTCAAATGGCTCGTTGTTGCCCTCGCCATTGTCCTGGCTATTGGCTC
AAAGTATGCGAAGAGGAAGCTTCCCTTGGTGCCCGTCAACTTGGAAGGCA
AGCATTTCATTGTCACTGGCGCCAGTGCCGGTATCGGCAAGGAAACCGTC
CGTACCCTAGCACAATGGAACGCCAGTGTGGTCATGGCCGTACGTAACAC
AAACAAGGGTAACGCCGTGCTGGAGGACATCCGCGCATCGCTTGGAGGAG
GCAGTATTCCCGTGGAAGTATGGGAGATGGATTTAGCGAAATTTGAATCC
GTTCGGGCGTTCGCTGCCAAGTACCTGGAATCTAGTCGCCCTTTAGATGT
TTTGATCAACAATGCGGGGCTGGTCTCGTGGGATTATATCATAACGGAGG
ATGGTCATGAGCTCACTCACCAGACTAATCACCTCGGGCATTTCTTGCTT
ACCAAGCTTTTGATGGGCCCGCTCCAGGCCTCGGCGCCCTCGCGAGTGAT
TCAAGTTTCTTCAGAAGCTCACTATATGGGCAAGATCGATTTGGACAACC
TCGAATCTTCCAACGAGACCTACAATCACTTTGCCACCTATGGCAACACC
AAGCTCATGAATGTCCTGTTCGGCAATGAGCTCAACCGCCGCTTCAAGGA
CTCAGGCGTTGTCTCCACCTCCCTCCATCCCGGATTCGTCCAAACGGAGT
TCCTGAGAGACGTCCCTGAATGGCTGATACCAATCAGCAAAGCTGCATGT
GCTTTATTTGCTCGTGATGAAATGGAGGGGGCCAAGACCCAGATCATGGC
TGCCACGGCACCGGAGTACGAAAGTGTGGGAGGTGTGTATTTTGATTCGT
GTGCGCCAAAGCAACCAAATAAGCTTGCGTTGGACGAGGCGTTGGCCACG
GCATTTTGGGAGAAGTCCGAGGAGGCTATCAACAAAGTGCTGGTTCGAGA
TGCGGAGGATTTAGAGGTGCCGGAAGAGCAGATGGAAGAGGAGGTGTTCA
AGGATGCCGTCGAGGCGTAAATGCTCAAATGGCTCGTTGTTGCCCTCGCC
ATTGTCCTGGCTATTGGCTCAAAGTATGCGAAGAGGAAGCTTCCCTTGGT
GCCCGTCAACTTGGAAGGCAAGCATTTCATTGTCACTGGCGCCAGTGCCG
GTATCGGCAAGGAAACCGTCCGTACCCTAGCACAATGGAACGCCAGTGTG
GTCATGGCCGTACGTAACACAAACAAGGGTAACGCCGTGCTGGAGGACAT
CCGCGCATCGCTTGGAGGAGGCAGTATTCCCGTGGAAGTATGGGAGATGG
ATTTAGCGAAATTTGAATCCGTTCGGGCGTTCGCTGCCAAGTACCTGGAA
TCTAGTCGCCCTTTAGATGTTTTGATCAACAATGCGGGGCTGGTCTCGTG
GGATTATATCATAACGGAGGATGGTCATGAGCTCACTCACCAGACTAATC
ACCTCGGGCATTTCTTGCTTACCAAGCTTTTGATGGGCCCGCTCCAGGCC
TCGGCGCCCTCGCGAGTGATTCAAGTTTCTTCAGAAGCTCACTATATGGG
CAAGATCGATTTGGACAACCTCGAATCTTCCAACGAGACCTACAATCACT
TTGCCACCTATGGCAACACCAAGCTCATGAATGTCCTGTTCGGCAATGAG
CTCAACCGCCGCTTCAAGGACTCAGGCGTTGTCTCCACCTCCCTCCATCC
CGGATTCGTCCAAACGGAGTTCCTGAGAGACGTCCCTGAATGGCTGATAC
CAATCAGCAAAGCTGCATGTGCTTTATTTGCTCGTGATGAAATGGAGGGG
GCCAAGACCCAGATCATGGCTGCCACGGCACCGGAGTACGAAAGTGTGGG
AGGTGTGTATTTTGATTCGTGTGCGCCAAAGCAACCAAATAAGCTTGCGT
TGGACGAGGCGTTGGCCACGGCATTTTGGGAGAAGTCCGAGGAGGCTATC
AACAAAGTGCTGGTTCGAGATGCGGAGGATTTAGAGGTGCCGGAAGAGCA
GATGGAAGAGGAGGTGTTCAAGGATGCCGTCGAGGCGTAA
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Synonyms
Publications