Properties
| Property Name | Value |
|---|
| TranscriptId | 122651 |
| Track | FilteredModels2 |
| ProteinId | 122565 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:221823..222895 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6593 ID=mRNA_6593|Name=jgi.p|Nanoce1779_2|122565|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
CTCAACTCGTTCCTGTATCACACCAACCACAGGAACCACACTGCCGCGCG
AACCTTCAAAGTCAACATAGTAGCAGTCCTAAGACGCCCACCTCATTAGC
ACCATGCCGGCTACTTCTGGGCGCGTGAAAATGCCACACAACAACCGCAT
GTCCAGCTCAGCGGCCTTGGGTACAAGCGATATGTGGAAGAATGTTATCA
AATACGACCCCTACGCCAACAACGAAGACGCTGCTGCCGAAGCTGCTGCT
GCGGAGCTGGCCGAGGAGCAACAAAGGGGGTTGATGGATGTAGTGAGGAT
CAAGGCTCGAGAGACGCTCGGTGCAGAAAGCAAACGTGGCGCCTGCCGAA
AATGTGGGAATGTCGGACATTTGACCTATCAGTGCCGGAACCACCTGGGG
GGTAATAATCGAGCAGCGGATTCCGATGATGGCAGCAGTGATGATGATGA
TGAAAGTGTTGAGAGTGATGAGGACGTAGTGCAAGCCAAGGCTGATGCAG
CAGCAACAATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGGAGAC
AAGGCGGGGAGAGGAAAGCGTCGGAAGGAAAGGGAGAGGGGATGTAGTAA
TGAGGATGGTAGCAGTAGCAGTGGAGCGGATAGCGAAGGGAAGGAAAGGG
GGGCCGACAGACGGAAAAGGAAGCGGGAAAGAGAACGGAGAGTTAGTCGG
AGCCCGGAGCGCTCCAACAAGGAGAGCAAGAAACAAAGAAAGGATAAAAA
GTATAAGAAGGTATGTTTTTATATGATCTTATAAGATGAAACTTGTCAAT
TTCAGTAGAGCAGTAGGTCATCGAGGGGGGGGGGACGGTTTACAAATACT
GAGCTCTCACGCCTTTC back to topprotein sequence of jgi.p|Nanoce1779_2|122565 >mRNA_6593-protein ID=mRNA_6593-protein|Name=jgi.p|Nanoce1779_2|122565|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAA
ELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHLGG
NNRAADSDDGSSDDDDESVESDEDVVQAKADAAATMAAAAAAAAAAVGDK
AGRGKRRKERERGCSNEDGSSSSGADSEGKERGADRRKRKRERERRVSRS
PERSNKESKKQRKDKKYKKVCFYMIL* back to topmRNA from alignment at scaffold_18:221823..222895+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6593 ID=mRNA_6593|Name=jgi.p|Nanoce1779_2|122565|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp|location=Sequence derived from alignment at scaffold_18:221823..222895+ (Nannochloropsis oceanica)
CTCAACTCGTTCCTGTATCACACCAACCACAGGAACCACACTGCCGCGCG
AACCTTCAAAGTCAACATAGTAGCAGTCCTAAGACGCCCACCTCATTAGC
ACCATGCCGGCTACTTCTGGGCGCGTGGTAAGTACACACAGCGAGGCACC
ACACTCTCCAAGTCCCGCCATCGAGTATCTCATGCTCTCCCCCTTCTTCC
ATACCCACCACAGAAAATGCCACACAACAACCGCATGTCCAGCTCAGCGG
CCTTGGGTACAAGCGATATGTGGAAGAATGTTATCAAATACGACCCCTAC
GCCAACAACGAAGGTACGTACGTAAGCTCTCTGTCCCTAGGACGGGTGAG
CTCCACGTCCACACCCTAAACCCACAAAAGACCTTCTCTCCGTCCTTTGC
GACCCCTACCCAAATCCATGCATCACAAAACAGACGCTGCTGCCGAAGCT
GCTGCTGCGGAGCTGGCCGAGGAGCAACAAAGGGGGTTGATGGATGTAGT
GAGGATCAAGGCTCGAGAGACGCTCGGTGCAGAAAGCAAACGTGGCGCCT
GCCGAAAATGTGGGAATGTCGGACATTTGACCTATCAGTGCCGGAACCAC
CTGGGGGGTAATAATCGAGCAGCGGATTCCGATGATGGCAGCAGTGATGA
TGATGATGAAAGTGTTGAGAGTGATGAGGACGTAGTGCAAGCCAAGGCTG
ATGCAGCAGCAACAATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTA
GGAGACAAGGCGGGGAGAGGAAAGCGTCGGAAGGAAAGGGAGAGGGGATG
TAGTAATGAGGATGGTAGCAGTAGCAGTGGAGCGGATAGCGAAGGGAAGG
AAAGGGGGGCCGACAGACGGAAAAGGAAGCGGGAAAGAGAACGGAGAGTT
AGTCGGAGCCCGGAGCGCTCCAACAAGGAGAGCAAGAAACAAAGAAAGGA
TAAAAAGTATAAGAAGGTATGTTTTTATATGATCTTATAAGATGAAACTT
GTCAATTTCAGTAGAGCAGTAGGTCATCGAGGGGGGGGGGACGGTTTACA
AATACTGAGCTCTCACGCCTTTC back to topCoding sequence (CDS) from alignment at scaffold_18:221823..222895+ >mRNA_6593 ID=mRNA_6593|Name=jgi.p|Nanoce1779_2|122565|organism=Nannochloropsis oceanica|type=CDS|length=2043bp|location=Sequence derived from alignment at scaffold_18:221823..222895+ (Nannochloropsis oceanica)
ATGCCGGCTACTTCTGGGCGCGTGAAAATGCCACACAACAACCGCATGTC
CAGCTCAGCGGCCTTGGGTACAAGCGATATGTGGAAGAATGTTATCAAAT
ACGACCCCTACGCCAACAACGAAGACGCTGCTGCCGAAGCTGCTGCTGCG
GAGCTGGCCGAGGAGCAACAAAGGGGGTTGATGGATGTAGTGAGGATCAA
GGCTCGAGAGACGCTCGGTGCAGAAAGCAAACGTGGCGCCTGCCGAAAAT
GTGGGAATGTCGGACATTTGACCTATCAGTGCCGGAACCACCTGGGGGGT
AATAATCGAGCAGCGGATTCCGATGATGGCAGCAGTGATGATGATGATGA
AAGTGTTGAGAGTGATGAGGACGTAGTGCAAGCCAAGGCTGATGCAGCAG
CAACAATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGGAGACAAG
GCGGGGAGAGGAAAGCGTCGGAAGGAAAGGGAGAGGGGATGTAGTAATGA
GGATGGTAGCAGTAGCAGTGGAGCGGATAGCGAAGGGAAGGAAAGGGGGG
CCGACAGACGGAAAAGGAAGCGGGAAAGAGAACGGAGAGTTAGTCGGAGC
CCGGAGCGCTCCAACAAGGAGAGCAAGAAACAAAGAAAGGATAAAAAGTA
TAAGAAGGTATGTTTTTATATGATCTTATAAATGCCGGCTACTTCTGGGC
GCGTGAAAATGCCACACAACAACCGCATGTCCAGCTCAGCGGCCTTGGGT
ACAAGCGATATGTGGAAGAATGTTATCAAATACGACCCCTACGCCAACAA
CGAAGACGCTGCTGCCGAAGCTGCTGCTGCGGAGCTGGCCGAGGAGCAAC
AAAGGGGGTTGATGGATGTAGTGAGGATCAAGGCTCGAGAGACGCTCGGT
GCAGAAAGCAAACGTGGCGCCTGCCGAAAATGTGGGAATGTCGGACATTT
GACCTATCAGTGCCGGAACCACCTGGGGGGTAATAATCGAGCAGCGGATT
CCGATGATGGCAGCAGTGATGATGATGATGAAAGTGTTGAGAGTGATGAG
GACGTAGTGCAAGCCAAGGCTGATGCAGCAGCAACAATGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGTAGGAGACAAGGCGGGGAGAGGAAAGCGTC
GGAAGGAAAGGGAGAGGGGATGTAGTAATGAGGATGGTAGCAGTAGCAGT
GGAGCGGATAGCGAAGGGAAGGAAAGGGGGGCCGACAGACGGAAAAGGAA
GCGGGAAAGAGAACGGAGAGTTAGTCGGAGCCCGGAGCGCTCCAACAAGG
AGAGCAAGAAACAAAGAAAGGATAAAAAGTATAAGAAGGTATGTTTTTAT
ATGATCTTATAAATGCCGGCTACTTCTGGGCGCGTGAAAATGCCACACAA
CAACCGCATGTCCAGCTCAGCGGCCTTGGGTACAAGCGATATGTGGAAGA
ATGTTATCAAATACGACCCCTACGCCAACAACGAAGACGCTGCTGCCGAA
GCTGCTGCTGCGGAGCTGGCCGAGGAGCAACAAAGGGGGTTGATGGATGT
AGTGAGGATCAAGGCTCGAGAGACGCTCGGTGCAGAAAGCAAACGTGGCG
CCTGCCGAAAATGTGGGAATGTCGGACATTTGACCTATCAGTGCCGGAAC
CACCTGGGGGGTAATAATCGAGCAGCGGATTCCGATGATGGCAGCAGTGA
TGATGATGATGAAAGTGTTGAGAGTGATGAGGACGTAGTGCAAGCCAAGG
CTGATGCAGCAGCAACAATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GTAGGAGACAAGGCGGGGAGAGGAAAGCGTCGGAAGGAAAGGGAGAGGGG
ATGTAGTAATGAGGATGGTAGCAGTAGCAGTGGAGCGGATAGCGAAGGGA
AGGAAAGGGGGGCCGACAGACGGAAAAGGAAGCGGGAAAGAGAACGGAGA
GTTAGTCGGAGCCCGGAGCGCTCCAACAAGGAGAGCAAGAAACAAAGAAA
GGATAAAAAGTATAAGAAGGTATGTTTTTATATGATCTTATAA back to top
|