jgi.p|Nanoce1779_2|597420, mRNA_6591 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597420
Unique NamemRNA_6591
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length330
Alignment locationscaffold_18:219967..220296 -

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Properties
Property NameValue
TranscriptId597506
TrackFilteredModels2
ProteinId597420
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:219967..220296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597420gene_6591Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597420mRNA_6591-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6591CDS_6591Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6591 ID=mRNA_6591|Name=jgi.p|Nanoce1779_2|597420|organism=Nannochloropsis oceanica|type=mRNA|length=330bp
GGAAGTATGGTTTGTTTGTTTTGCGTTTACATATGGATTATTTGTGTATC
CGGAGTCTCGAGTCTTTCGTCTCTCGCCCCCTTTCCCTTTTCCTTATTTT
CTTTATTTGTGGCCCAGGTCCTCGCTTTCTCTATGTCCTTCTCTTACCCC
GTTTTGCCAGTTTATGGATTTGGACGGTAAATCATCTAAAGTCCAGCCAA
TGAGGCCACCGTGCGATGCCGTCGTCTTCGTCGTTGCTCCCGTCTGCATG
CCCATATTGATTTTATGTCTATTCCATCTATTTTCTTCTTGTTCTTCTCT
GTCTTTTCCTTCTCCTTCTCCTTCTTCTTC
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protein sequence of jgi.p|Nanoce1779_2|597420

>mRNA_6591-protein ID=mRNA_6591-protein|Name=jgi.p|Nanoce1779_2|597420|organism=Nannochloropsis oceanica|type=polypeptide|length=58bp
MVCLFCVYIWIICVSGVSSLSSLAPFPFSLFSLFVAQVLAFSMSFSYPVL
PVYGFGR*
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mRNA from alignment at scaffold_18:219967..220296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6591 ID=mRNA_6591|Name=jgi.p|Nanoce1779_2|597420|organism=Nannochloropsis oceanica|type=mRNA|length=330bp|location=Sequence derived from alignment at scaffold_18:219967..220296- (Nannochloropsis oceanica)
GGAAGTATGGTTTGTTTGTTTTGCGTTTACATATGGATTATTTGTGTATC
CGGAGTCTCGAGTCTTTCGTCTCTCGCCCCCTTTCCCTTTTCCTTATTTT
CTTTATTTGTGGCCCAGGTCCTCGCTTTCTCTATGTCCTTCTCTTACCCC
GTTTTGCCAGTTTATGGATTTGGACGGTAAATCATCTAAAGTCCAGCCAA
TGAGGCCACCGTGCGATGCCGTCGTCTTCGTCGTTGCTCCCGTCTGCATG
CCCATATTGATTTTATGTCTATTCCATCTATTTTCTTCTTGTTCTTCTCT
GTCTTTTCCTTCTCCTTCTCCTTCTTCTTC
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Coding sequence (CDS) from alignment at scaffold_18:219967..220296-

>mRNA_6591 ID=mRNA_6591|Name=jgi.p|Nanoce1779_2|597420|organism=Nannochloropsis oceanica|type=CDS|length=174bp|location=Sequence derived from alignment at scaffold_18:219967..220296- (Nannochloropsis oceanica)
ATGGTTTGTTTGTTTTGCGTTTACATATGGATTATTTGTGTATCCGGAGT
CTCGAGTCTTTCGTCTCTCGCCCCCTTTCCCTTTTCCTTATTTTCTTTAT
TTGTGGCCCAGGTCCTCGCTTTCTCTATGTCCTTCTCTTACCCCGTTTTG
CCAGTTTATGGATTTGGACGGTAA
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Synonyms
Publications