jgi.p|Nanoce1779_2|667684, mRNA_659 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667684
Unique Name	mRNA_659
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	969
Alignment location	scaffold_2:124386..125930 +

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Properties


Property Name	Value
TranscriptId	667770
Track	FilteredModels2
ProteinId	667684

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:124386..125930 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667684	gene_659	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667684	mRNA_659-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_659	CDS_659	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:124386..125930+
coding sequence from alignment at scaffold_2:124386..125930+

mRNA sequence

>mRNA_659 ID=mRNA_659|Name=jgi.p|Nanoce1779_2|667684|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
ATGCGAGTCATCAGCATACCCAAGTCGTCATCGTCATCTGCATCAAGTGA
CGAGCAGCCGAAGGCCGTCAAGGAGAAGACAGAAAACATCCCACACGCCA
CAAATGGCGGAGTAAACGACGGCCCAACATATTTCGAATGGCTAGGTCGA
CAAGTCGAGCTCAAGCTTCGTCCAAAGCCGTACCAAGGCCTGCGCTTGAA
AATCGACAAGGAATTAGCAGTGTTGCTGATGCGGTCCTCCTATGAGATTG
CAGATGAGTTGGACTTTGTGGCAATGAATGACTTTCAGAAGGATTTTTTC
ACATTTCGACAGGCCGAATGGGAAGACTACGTCAACACCTTTCCCCCCCT
CTCCGTCCGGCAAGGCGAGCTTACCCAACCCTCCTACTTCGACTTTATTT
CCTTTGCACAATACTGCACATTAAATGAAGAAATGCGCCATGGCAAGATG
GTGTTTGTCGAGCTGATCTCTGCAGAGGGAGAAAAGCAGGTCGTCCGTCG
GGCGGACGACCCCTCCTTGCCTCAGGACAACGCCCTGTTACCCGCGGAGC
ATGCACGGAGGGTTGGACAAAGGATACTTGACAAGTTTCTGGAGGCGCCT
GAGGTGTATGCACCAACGGTCAGGGGCAGGGAGAAAGGGAAGGAGGGCCG
GGCGGGGGATGAGGAGGTGTTGGAGAACGTGAAGAGAATCATGGATTTGT
TCACGGCCAAACAGTACAATCAGGGAGGGGAGGTGAGGGTGCTAGAGGGA
GGGAAGGAGGGAAGAAGGGGGATAATGAAATTGCAGATTTCGAGTCGGGC
GCCGGCGAATTTGTGGAGCTTACAGAGTCTCTTGTTTCGAAAAGAGCCTT
TATTAAACGACTTCGAAGGGAAGGCCGTGGCGGCTTACCTGAGGGCGAGC
GGGAGGGAGGGAGGAAGTTACGGTGTGGAGGTGCAGGGGACAGACGTAAT
TTATACGATCAGTATTTAG

protein sequence of jgi.p|Nanoce1779_2|667684

>mRNA_659-protein ID=mRNA_659-protein|Name=jgi.p|Nanoce1779_2|667684|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MRVISIPKSSSSSASSDEQPKAVKEKTENIPHATNGGVNDGPTYFEWLGR
QVELKLRPKPYQGLRLKIDKELAVLLMRSSYEIADELDFVAMNDFQKDFF
TFRQAEWEDYVNTFPPLSVRQGELTQPSYFDFISFAQYCTLNEEMRHGKM
VFVELISAEGEKQVVRRADDPSLPQDNALLPAEHARRVGQRILDKFLEAP
EVYAPTVRGREKGKEGRAGDEEVLENVKRIMDLFTAKQYNQGGEVRVLEG
GKEGRRGIMKLQISSRAPANLWSLQSLLFRKEPLLNDFEGKAVAAYLRAS
GREGGSYGVEVQGTDVIYTISI*

mRNA from alignment at scaffold_2:124386..125930+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_659 ID=mRNA_659|Name=jgi.p|Nanoce1779_2|667684|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp|location=Sequence derived from alignment at scaffold_2:124386..125930+ (Nannochloropsis oceanica)
ATGCGAGTCATCAGCATACCCAAGTCGTCATCGTCATCTGCATCAAGTGA
CGAGGTATGAGCTTGCTTGCCTGTCTACGCATGCCCATTTACCAAAGCAA
CGCTCTCTTTCTTCCCTCACAGGTATTCGGTATTATCTTAGTCGTCAGGC
CAGCCTCAGGATCTTTCCGCTCGCAGCTACGAGACTGAGGGGTAGGGCAG
GTACGCGGGTTTGGACCGAAGAGCAAATGGACAGCTACCACCACCGACAT
CACTGTCCCTCCACGACAAGCAGCCGAAGGCCGTCAAGGAGAAGACAGAA
AACATGTCAGATAAAGTATCTGCCCGTGCTTCTTGTCCTTATAACGCTTC
TCGCCTTCGCATCTGCCTTCCTCCCGCAATCCCCTTCCCGGCGGCTTCCT
CTACCCCTCGCCCGCCGTCCTTCCCGCAGCCCACACGCCACAAATGGCGG
AGTAAACGACGGCCCAACATATTTCGAATGGCTAGGTCGACAAGTCGAGC
TCAAGCTTCGTCCAAAGCCGTACCAAGGCCTGCGCTTGAAAATCGACAAG
GAATTAGCAGTGTTGCTGATGCGGTCCTCCTATGAGATTGCAGATGAGTT
GGACTTTGTGGCAATGAATGACTTTCAGAAGGATTTTTTCACATTTCGAC
AGGTAAGAGATGGACAGGGGGAAGGAGGAAAGGACGAGAAGAATGAAAGG
GACAGGAGGACGAATAGTTGCGGCTGTGAAGTGTCGGCGCAATCTATACG
CTGTTCCTTATTTATTCCCTGCCCTGACAAATCCCTTGTTTAAGCTTGGT
CGTATAGTTTCTGTATCTTAGCTGTTCTCTCAAAATATCACTTCTTCCGC
CCCCTTCAACCCTTTGCCCCCCCCCCTTCCTCCATTAGGCCGAATGGGAA
GACTACGTCAACACCTTTCCCCCCCTCTCCGTCCGGCAAGGCGAGCTTAC
CCAACCCTCCTACTTCGACTTTATTTCCTTTGCACAATACTGCACATTAA
ATGAAGAAATGCGCCATGGCAAGATGGTGTTTGTCGAGCTGATCTCTGCA
GAGGGAGAAAAGCAGGTCGTCCGTCGGGCGGACGACCCCTCCTTGCCTCA
GGACAACGCCCTGTTACCCGCGGAGCATGCACGGAGGGTTGGACAAAGGA
TACTTGACAAGTTTCTGGAGGCGCCTGAGGTGTATGCACCAACGGTCAGG
GGCAGGGAGAAAGGGAAGGAGGGCCGGGCGGGGGATGAGGAGGTGTTGGA
GAACGTGAAGAGAATCATGGATTTGTTCACGGCCAAACAGTACAATCAGG
GAGGGGAGGTGAGGGTGCTAGAGGGAGGGAAGGAGGGAAGAAGGGGGATA
ATGAAATTGCAGATTTCGAGTCGGGCGCCGGCGAATTTGTGGAGCTTACA
GAGTCTCTTGTTTCGAAAAGAGCCTTTATTAAACGACTTCGAAGGGAAGG
CCGTGGCGGCTTACCTGAGGGCGAGCGGGAGGGAGGGAGGAAGTTACGGT
GTGGAGGTGCAGGGGACAGACGTAATTTATACGATCAGTATTTAG

Coding sequence (CDS) from alignment at scaffold_2:124386..125930+

>mRNA_659 ID=mRNA_659|Name=jgi.p|Nanoce1779_2|667684|organism=Nannochloropsis oceanica|type=CDS|length=3876bp|location=Sequence derived from alignment at scaffold_2:124386..125930+ (Nannochloropsis oceanica)
ATGCGAGTCATCAGCATACCCAAGTCGTCATCGTCATCTGCATCAAGTGA
CGAGCAGCCGAAGGCCGTCAAGGAGAAGACAGAAAACATCCCACACGCCA
CAAATGGCGGAGTAAACGACGGCCCAACATATTTCGAATGGCTAGGTCGA
CAAGTCGAGCTCAAGCTTCGTCCAAAGCCGTACCAAGGCCTGCGCTTGAA
AATCGACAAGGAATTAGCAGTGTTGCTGATGCGGTCCTCCTATGAGATTG
CAGATGAGTTGGACTTTGTGGCAATGAATGACTTTCAGAAGGATTTTTTC
ACATTTCGACAGGCCGAATGGGAAGACTACGTCAACACCTTTCCCCCCCT
CTCCGTCCGGCAAGGCGAGCTTACCCAACCCTCCTACTTCGACTTTATTT
CCTTTGCACAATACTGCACATTAAATGAAGAAATGCGCCATGGCAAGATG
GTGTTTGTCGAGCTGATCTCTGCAGAGGGAGAAAAGCAGGTCGTCCGTCG
GGCGGACGACCCCTCCTTGCCTCAGGACAACGCCCTGTTACCCGCGGAGC
ATGCACGGAGGGTTGGACAAAGGATACTTGACAAGTTTCTGGAGGCGCCT
GAGGTGTATGCACCAACGGTCAGGGGCAGGGAGAAAGGGAAGGAGGGCCG
GGCGGGGGATGAGGAGGTGTTGGAGAACGTGAAGAGAATCATGGATTTGT
TCACGGCCAAACAGTACAATCAGGGAGGGGAGGTGAGGGTGCTAGAGGGA
GGGAAGGAGGGAAGAAGGGGGATAATGAAATTGCAGATTTCGAGTCGGGC
GCCGGCGAATTTGTGGAGCTTACAGAGTCTCTTGTTTCGAAAAGAGCCTT
TATTAAACGACTTCGAAGGGAAGGCCGTGGCGGCTTACCTGAGGGCGAGC
GGGAGGGAGGGAGGAAGTTACGGTGTGGAGGTGCAGGGGACAGACGTAAT
TTATACGATCAGTATTTAGATGCGAGTCATCAGCATACCCAAGTCGTCAT
CGTCATCTGCATCAAGTGACGAGCAGCCGAAGGCCGTCAAGGAGAAGACA
GAAAACATCCCACACGCCACAAATGGCGGAGTAAACGACGGCCCAACATA
TTTCGAATGGCTAGGTCGACAAGTCGAGCTCAAGCTTCGTCCAAAGCCGT
ACCAAGGCCTGCGCTTGAAAATCGACAAGGAATTAGCAGTGTTGCTGATG
CGGTCCTCCTATGAGATTGCAGATGAGTTGGACTTTGTGGCAATGAATGA
CTTTCAGAAGGATTTTTTCACATTTCGACAGGCCGAATGGGAAGACTACG
TCAACACCTTTCCCCCCCTCTCCGTCCGGCAAGGCGAGCTTACCCAACCC
TCCTACTTCGACTTTATTTCCTTTGCACAATACTGCACATTAAATGAAGA
AATGCGCCATGGCAAGATGGTGTTTGTCGAGCTGATCTCTGCAGAGGGAG
AAAAGCAGGTCGTCCGTCGGGCGGACGACCCCTCCTTGCCTCAGGACAAC
GCCCTGTTACCCGCGGAGCATGCACGGAGGGTTGGACAAAGGATACTTGA
CAAGTTTCTGGAGGCGCCTGAGGTGTATGCACCAACGGTCAGGGGCAGGG
AGAAAGGGAAGGAGGGCCGGGCGGGGGATGAGGAGGTGTTGGAGAACGTG
AAGAGAATCATGGATTTGTTCACGGCCAAACAGTACAATCAGGGAGGGGA
GGTGAGGGTGCTAGAGGGAGGGAAGGAGGGAAGAAGGGGGATAATGAAAT
TGCAGATTTCGAGTCGGGCGCCGGCGAATTTGTGGAGCTTACAGAGTCTC
TTGTTTCGAAAAGAGCCTTTATTAAACGACTTCGAAGGGAAGGCCGTGGC
GGCTTACCTGAGGGCGAGCGGGAGGGAGGGAGGAAGTTACGGTGTGGAGG
TGCAGGGGACAGACGTAATTTATACGATCAGTATTTAGATGCGAGTCATC
AGCATACCCAAGTCGTCATCGTCATCTGCATCAAGTGACGAGCAGCCGAA
GGCCGTCAAGGAGAAGACAGAAAACATCCCACACGCCACAAATGGCGGAG
TAAACGACGGCCCAACATATTTCGAATGGCTAGGTCGACAAGTCGAGCTC
AAGCTTCGTCCAAAGCCGTACCAAGGCCTGCGCTTGAAAATCGACAAGGA
ATTAGCAGTGTTGCTGATGCGGTCCTCCTATGAGATTGCAGATGAGTTGG
ACTTTGTGGCAATGAATGACTTTCAGAAGGATTTTTTCACATTTCGACAG
GCCGAATGGGAAGACTACGTCAACACCTTTCCCCCCCTCTCCGTCCGGCA
AGGCGAGCTTACCCAACCCTCCTACTTCGACTTTATTTCCTTTGCACAAT
ACTGCACATTAAATGAAGAAATGCGCCATGGCAAGATGGTGTTTGTCGAG
CTGATCTCTGCAGAGGGAGAAAAGCAGGTCGTCCGTCGGGCGGACGACCC
CTCCTTGCCTCAGGACAACGCCCTGTTACCCGCGGAGCATGCACGGAGGG
TTGGACAAAGGATACTTGACAAGTTTCTGGAGGCGCCTGAGGTGTATGCA
CCAACGGTCAGGGGCAGGGAGAAAGGGAAGGAGGGCCGGGCGGGGGATGA
GGAGGTGTTGGAGAACGTGAAGAGAATCATGGATTTGTTCACGGCCAAAC
AGTACAATCAGGGAGGGGAGGTGAGGGTGCTAGAGGGAGGGAAGGAGGGA
AGAAGGGGGATAATGAAATTGCAGATTTCGAGTCGGGCGCCGGCGAATTT
GTGGAGCTTACAGAGTCTCTTGTTTCGAAAAGAGCCTTTATTAAACGACT
TCGAAGGGAAGGCCGTGGCGGCTTACCTGAGGGCGAGCGGGAGGGAGGGA
GGAAGTTACGGTGTGGAGGTGCAGGGGACAGACGTAATTTATACGATCAG
TATTTAGATGCGAGTCATCAGCATACCCAAGTCGTCATCGTCATCTGCAT
CAAGTGACGAGCAGCCGAAGGCCGTCAAGGAGAAGACAGAAAACATCCCA
CACGCCACAAATGGCGGAGTAAACGACGGCCCAACATATTTCGAATGGCT
AGGTCGACAAGTCGAGCTCAAGCTTCGTCCAAAGCCGTACCAAGGCCTGC
GCTTGAAAATCGACAAGGAATTAGCAGTGTTGCTGATGCGGTCCTCCTAT
GAGATTGCAGATGAGTTGGACTTTGTGGCAATGAATGACTTTCAGAAGGA
TTTTTTCACATTTCGACAGGCCGAATGGGAAGACTACGTCAACACCTTTC
CCCCCCTCTCCGTCCGGCAAGGCGAGCTTACCCAACCCTCCTACTTCGAC
TTTATTTCCTTTGCACAATACTGCACATTAAATGAAGAAATGCGCCATGG
CAAGATGGTGTTTGTCGAGCTGATCTCTGCAGAGGGAGAAAAGCAGGTCG
TCCGTCGGGCGGACGACCCCTCCTTGCCTCAGGACAACGCCCTGTTACCC
GCGGAGCATGCACGGAGGGTTGGACAAAGGATACTTGACAAGTTTCTGGA
GGCGCCTGAGGTGTATGCACCAACGGTCAGGGGCAGGGAGAAAGGGAAGG
AGGGCCGGGCGGGGGATGAGGAGGTGTTGGAGAACGTGAAGAGAATCATG
GATTTGTTCACGGCCAAACAGTACAATCAGGGAGGGGAGGTGAGGGTGCT
AGAGGGAGGGAAGGAGGGAAGAAGGGGGATAATGAAATTGCAGATTTCGA
GTCGGGCGCCGGCGAATTTGTGGAGCTTACAGAGTCTCTTGTTTCGAAAA
GAGCCTTTATTAAACGACTTCGAAGGGAAGGCCGTGGCGGCTTACCTGAG
GGCGAGCGGGAGGGAGGGAGGAAGTTACGGTGTGGAGGTGCAGGGGACAG
ACGTAATTTATACGATCAGTATTTAG

Synonyms

Publications