jgi.p|Nanoce1779_2|531208, mRNA_6588 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531208
Unique NamemRNA_6588
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length420
Alignment locationscaffold_18:213600..214019 +

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Properties
Property NameValue
TranscriptId531294
TrackFilteredModels2
ProteinId531208
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:213600..214019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531208gene_6588Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531208mRNA_6588-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6588CDS_6588Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6588 ID=mRNA_6588|Name=jgi.p|Nanoce1779_2|531208|organism=Nannochloropsis oceanica|type=mRNA|length=420bp
ATGATTCAGAGAGCCGTCCTCCCAACCCCGTCCTCCCTCCCACCCTCTTC
CCTCTCGGAGGCGGCGCCCCCGCCTTCCATTTCACCTTATTCCTTCCTCT
CGTTCCGTGAACAACAGATTTATGGTTCTCTACACGTTTCCCATCCCGTC
TTACGATATCGTCGCTACAGCCCTGTGGTTGCGGACCTCAAGTTCGTCCT
GAACGTCCCAGGTGTATCCGCTCACTTTGCCAAGGCCTGCATGGACGCCT
GGATCGCCCGTCTTCTTCTTCCCCTCCAATATGTCCACTCCCAAAAGAGA
GAATTGAGGGAGCATGTGGCGTATGAATCGAGAGAGTGGATGTTTGCTTT
CAATGTGCAAATTTCTCTGAGTCATGTCTTAGATTGTCTATTGAATTGGG
TTAGGACGGCCGAGGCTGGC
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protein sequence of jgi.p|Nanoce1779_2|531208

>mRNA_6588-protein ID=mRNA_6588-protein|Name=jgi.p|Nanoce1779_2|531208|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MIQRAVLPTPSSLPPSSLSEAAPPPSISPYSFLSFREQQIYGSLHVSHPV
LRYRRYSPVVADLKFVLNVPGVSAHFAKACMDAWIARLLLPLQYVHSQKR
ELREHVAYESREWMFAFNVQISLSHVLDCLLNWVRTAEAG
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mRNA from alignment at scaffold_18:213600..214019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6588 ID=mRNA_6588|Name=jgi.p|Nanoce1779_2|531208|organism=Nannochloropsis oceanica|type=mRNA|length=420bp|location=Sequence derived from alignment at scaffold_18:213600..214019+ (Nannochloropsis oceanica)
ATGATTCAGAGAGCCGTCCTCCCAACCCCGTCCTCCCTCCCACCCTCTTC
CCTCTCGGAGGCGGCGCCCCCGCCTTCCATTTCACCTTATTCCTTCCTCT
CGTTCCGTGAACAACAGATTTATGGTTCTCTACACGTTTCCCATCCCGTC
TTACGATATCGTCGCTACAGCCCTGTGGTTGCGGACCTCAAGTTCGTCCT
GAACGTCCCAGGTGTATCCGCTCACTTTGCCAAGGCCTGCATGGACGCCT
GGATCGCCCGTCTTCTTCTTCCCCTCCAATATGTCCACTCCCAAAAGAGA
GAATTGAGGGAGCATGTGGCGTATGAATCGAGAGAGTGGATGTTTGCTTT
CAATGTGCAAATTTCTCTGAGTCATGTCTTAGATTGTCTATTGAATTGGG
TTAGGACGGCCGAGGCTGGC
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Coding sequence (CDS) from alignment at scaffold_18:213600..214019+

>mRNA_6588 ID=mRNA_6588|Name=jgi.p|Nanoce1779_2|531208|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_18:213600..214019+ (Nannochloropsis oceanica)
ATGATTCAGAGAGCCGTCCTCCCAACCCCGTCCTCCCTCCCACCCTCTTC
CCTCTCGGAGGCGGCGCCCCCGCCTTCCATTTCACCTTATTCCTTCCTCT
CGTTCCGTGAACAACAGATTTATGGTTCTCTACACGTTTCCCATCCCGTC
TTACGATATCGTCGCTACAGCCCTGTGGTTGCGGACCTCAAGTTCGTCCT
GAACGTCCCAGGTGTATCCGCTCACTTTGCCAAGGCCTGCATGGACGCCT
GGATCGCCCGTCTTCTTCTTCCCCTCCAATATGTCCACTCCCAAAAGAGA
GAATTGAGGGAGCATGTGGCGTATGAATCGAGAGAGTGGATGTTTGCTTT
CAATGTGCAAATTTCTCTGAGTCATGTCTTAGATTGTCTATTGAATTGGG
TTAGGACGGCCGAGGCTGGC
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Synonyms
Publications