jgi.p|Nanoce1779_2|597409, mRNA_6585 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597409
Unique Name	mRNA_6585
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1003
Alignment location	scaffold_18:210273..211372 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597495
Track	FilteredModels2
ProteinId	597409

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:210273..211372 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597409	gene_6585	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597409	mRNA_6585-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6585	CDS_6585	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:210273..211372+
coding sequence from alignment at scaffold_18:210273..211372+

mRNA sequence

>mRNA_6585 ID=mRNA_6585|Name=jgi.p|Nanoce1779_2|597409|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp
ACAGGCGTCCTCTTTCTTCACTCGCTAGCCTCCTGCATACCATCATGATG
AGACCCTCCTTCCCACTAGCCCTCTCCCTTGCCCTCTTCCTTGGCGGCCC
TGACCTCCCCCGTGCATTTGTCTTTTCGTCCTCCTCCTCACCAATCCACA
CGCAATCTAGCCAATCGTTTCAGCTGAGAATGAAGCTGGCCGGCGTAGAA
GACACGGCAACGTCCTCTACCACAACCGACAGCCTCCCGAGTCGAGCCTC
CTTTCTGGACACCATCCGCCTGAGCCGCAAAGTTGCCACTGGCACTACCA
CCTTTTTACTCGGCAGTGCTACCGGTCAGCTCCTGAATCCTGCCCTTCCT
GCTGCCCAAGCCGCGGACCTGACCCCGTTGCCTGCCGAGTTCAAGACAGC
CGTCATAAACATGCGCGAGGCCGTTTTCCCCATCAACCTCCGCGATGCTG
CAAAGGCTCTGTCTGAAACCCCTGGCTTGGATGAGCTGGCGTTTGATGAC
GGGAGTCGGCGGGCAATTAACACGGAATTGAAAGAGCTGCAGGCGGCAAG
ACCAGATTTGTGGGATGCCGAGACGAGCTATTACGGAGGGGTGATCCGGC
GGGCGGTCAACCCATTCCATGTGATCGAGCTGATTCCTTTGCTGAAGATC
GGACCTTTTACTGGAGGCCTTGGCTACTTGATTGCCATCGTCGTGCAGCG
CAAGTTTCCTCGTTTGTTCGGCCTCGCTTACTTTGGAGCCGTGGCATCCA
TTGTATTACCCGGTATCTACCTCATTTTGTACACTTAGAGAGCTTTGGGC
GAATCCGGTGATGGAATAAAAGGAGAAAGGAATGCTTATAGTGGTGAGGA
CTCGAGAAAGCGGGCTGAGAGAGATCAGCACAATTACCACTGAAATTCAT
CACGCAAAAGCAAAAAAGGACTTGAAATCTATGTATAAGGTCTTCATGTT
TGCTGTCTCTTTTAGTTTCTGGTTGTGGCGGTGGTGGTCGAAGCACTCCT
TGC

protein sequence of jgi.p|Nanoce1779_2|597409

>mRNA_6585-protein ID=mRNA_6585-protein|Name=jgi.p|Nanoce1779_2|597409|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MMRPSFPLALSLALFLGGPDLPRAFVFSSSSSPIHTQSSQSFQLRMKLAG
VEDTATSSTTTDSLPSRASFLDTIRLSRKVATGTTTFLLGSATGQLLNPA
LPAAQAADLTPLPAEFKTAVINMREAVFPINLRDAAKALSETPGLDELAF
DDGSRRAINTELKELQAARPDLWDAETSYYGGVIRRAVNPFHVIELIPLL
KIGPFTGGLGYLIAIVVQRKFPRLFGLAYFGAVASIVLPGIYLILYT*

mRNA from alignment at scaffold_18:210273..211372+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6585 ID=mRNA_6585|Name=jgi.p|Nanoce1779_2|597409|organism=Nannochloropsis oceanica|type=mRNA|length=1100bp|location=Sequence derived from alignment at scaffold_18:210273..211372+ (Nannochloropsis oceanica)
ACAGGCGTCCTCTTTCTTCACTCGCTAGCCTCCTGCATACCATCATGATG
AGACCCTCCTTCCCACTAGCCCTCTCCCTTGCCCTCTTCCTTGGCGGCCC
TGACCTCCCCCGTGCATTTGTCTTTTCGTCCTCCTCCTCACCAATCCACA
CGCAATCTAGCCAATCGTTTCAGCTGAGAATGAAGCTGGCCGGCGTAGAA
GACACGGCAACGTCCTCTACCACAACCGACAGCCTCCCGAGTCGAGCCTC
CTTTCTGGACACCATCCGCCTGAGCCGCAAAGTTGCCACTGGCACTACCA
CCTTTTTACTCGGCAGTGCTACCGGTCAGCTCCTGAATCCTGCCCTTCCT
GCTGCCCAAGCCGCGGACCTGACCCCGTTGCCTGCCGAGTTCAAGACAGC
CGTCATAAACATGCGCGAGGCCGTTTTCCCCATCAACCTCCGCGATGCTG
CAAAGGCTCTGTCTGAAACCCCTGGCTTGGATGAGCTGGCGTTTGATGAC
GGGAGTCGGCGGGCAATTAACACGGAATTGAAAGAGCTGCAGGCGGCAAG
ACCAGATTTGTGGGATGCCGAGACGAGCTATTACGGAGGGGTGATCCGGC
GGGCGGTCAACCCATTCCATGTGATCGAGCTGATTCCTTTGCTGAAGGTA
CGTTTTTGGTTACGGGCGCAAAGCTATGCACCGTGACTTTAATTGTAATT
CTAACACTTTTCCGACCAATTCTCCTTATTTTTTTAATGTATAGATCGGA
CCTTTTACTGGAGGCCTTGGCTACTTGATTGCCATCGTCGTGCAGCGCAA
GTTTCCTCGTTTGTTCGGCCTCGCTTACTTTGGAGCCGTGGCATCCATTG
TATTACCCGGTATCTACCTCATTTTGTACACTTAGAGAGCTTTGGGCGAA
TCCGGTGATGGAATAAAAGGAGAAAGGAATGCTTATAGTGGTGAGGACTC
GAGAAAGCGGGCTGAGAGAGATCAGCACAATTACCACTGAAATTCATCAC
GCAAAAGCAAAAAAGGACTTGAAATCTATGTATAAGGTCTTCATGTTTGC
TGTCTCTTTTAGTTTCTGGTTGTGGCGGTGGTGGTCGAAGCACTCCTTGC

Coding sequence (CDS) from alignment at scaffold_18:210273..211372+

>mRNA_6585 ID=mRNA_6585|Name=jgi.p|Nanoce1779_2|597409|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_18:210273..211372+ (Nannochloropsis oceanica)
ATGATGAGACCCTCCTTCCCACTAGCCCTCTCCCTTGCCCTCTTCCTTGG
CGGCCCTGACCTCCCCCGTGCATTTGTCTTTTCGTCCTCCTCCTCACCAA
TCCACACGCAATCTAGCCAATCGTTTCAGCTGAGAATGAAGCTGGCCGGC
GTAGAAGACACGGCAACGTCCTCTACCACAACCGACAGCCTCCCGAGTCG
AGCCTCCTTTCTGGACACCATCCGCCTGAGCCGCAAAGTTGCCACTGGCA
CTACCACCTTTTTACTCGGCAGTGCTACCGGTCAGCTCCTGAATCCTGCC
CTTCCTGCTGCCCAAGCCGCGGACCTGACCCCGTTGCCTGCCGAGTTCAA
GACAGCCGTCATAAACATGCGCGAGGCCGTTTTCCCCATCAACCTCCGCG
ATGCTGCAAAGGCTCTGTCTGAAACCCCTGGCTTGGATGAGCTGGCGTTT
GATGACGGGAGTCGGCGGGCAATTAACACGGAATTGAAAGAGCTGCAGGC
GGCAAGACCAGATTTGTGGGATGCCGAGACGAGCTATTACGGAGGGGTGA
TCCGGCGGGCGGTCAACCCATTCCATGTGATCGAGCTGATTCCTTTGCTG
AAGATCGGACCTTTTACTGGAGGCCTTGGCTACTTGATTGCCATCGTCGT
GCAGCGCAAGTTTCCTCGTTTGTTCGGCCTCGCTTACTTTGGAGCCGTGG
CATCCATTGTATTACCCGGTATCTACCTCATTTTGTACACTTAGATGATG
AGACCCTCCTTCCCACTAGCCCTCTCCCTTGCCCTCTTCCTTGGCGGCCC
TGACCTCCCCCGTGCATTTGTCTTTTCGTCCTCCTCCTCACCAATCCACA
CGCAATCTAGCCAATCGTTTCAGCTGAGAATGAAGCTGGCCGGCGTAGAA
GACACGGCAACGTCCTCTACCACAACCGACAGCCTCCCGAGTCGAGCCTC
CTTTCTGGACACCATCCGCCTGAGCCGCAAAGTTGCCACTGGCACTACCA
CCTTTTTACTCGGCAGTGCTACCGGTCAGCTCCTGAATCCTGCCCTTCCT
GCTGCCCAAGCCGCGGACCTGACCCCGTTGCCTGCCGAGTTCAAGACAGC
CGTCATAAACATGCGCGAGGCCGTTTTCCCCATCAACCTCCGCGATGCTG
CAAAGGCTCTGTCTGAAACCCCTGGCTTGGATGAGCTGGCGTTTGATGAC
GGGAGTCGGCGGGCAATTAACACGGAATTGAAAGAGCTGCAGGCGGCAAG
ACCAGATTTGTGGGATGCCGAGACGAGCTATTACGGAGGGGTGATCCGGC
GGGCGGTCAACCCATTCCATGTGATCGAGCTGATTCCTTTGCTGAAGATC
GGACCTTTTACTGGAGGCCTTGGCTACTTGATTGCCATCGTCGTGCAGCG
CAAGTTTCCTCGTTTGTTCGGCCTCGCTTACTTTGGAGCCGTGGCATCCA
TTGTATTACCCGGTATCTACCTCATTTTGTACACTTAG

Synonyms

Publications