jgi.p|Nanoce1779_2|597404, mRNA_6583 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597404
Unique NamemRNA_6583
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1007
Alignment locationscaffold_18:203938..204944 -

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Properties
Property NameValue
TranscriptId597490
TrackFilteredModels2
ProteinId597404
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:203938..204944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597404gene_6583Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597404mRNA_6583-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6583CDS_6583Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6583 ID=mRNA_6583|Name=jgi.p|Nanoce1779_2|597404|organism=Nannochloropsis oceanica|type=mRNA|length=1007bp
GTTCTGTACGTTTTGAGGGTGGGAGAGCTGCAGGGCTAGTGTCCGCGAAT
CAGCAGCAGCAGCAACGACAGCAGCAGCAGCAAGAGGAGGAGAAGAGGGA
TAAAATAAGGAAAAGAGGAGGAGGAAACTTGAGGAAAGGAAGAGGAGGAG
AAATAAGTAGAATAGAGGGGGGAGGGAGATGATTCGAGTTTAAGGCAGAA
GAGCGCATGCCATGCTTTTGATTCTTCATATTTTGGTAGGATGTAGCCTC
TATGCAGTAAGCGAGCATACAGACAAAAGAACGAGATAGTGAGAGGGGGC
AAGAGACATGGACTTAGAGAGAAAGAAGAGAGGGTGCGTGTGTAAGAGAG
CGAGGGTGGGAGGGAGAGAGTGAGAGGGAGAAAGGGAGAACAGGATGGAA
GATGAGGGTCTTTGGCTCCGCGCATTTGCGACAGCGATAACGACGATGAC
GACGACACTGATGACTGTATTTGTCTGTGTATGTAACGATCTGTACAAGT
ATGTGGGTGGATGCTGTGGTGCGAGGGTGTGGGGGTGTTTACAGCCTGTC
ACCACGGGGGTATTCCTCACCCTATTCCAAGCAGGCAGCAAAATCTGTTT
CTCTCTCTATTTTGATTTTGTTTTTGATCTCGGCCTCTTTTGTGTGTATT
TGCACACCACAATAAGATGTAGGTGTGTGAGAGAAGCAAAAGGGGGCAAG
GCCAGAAACACCATCAAGAGATTTAAAGAGACATGGAGAGAGGTTGTGGG
CGTAGAAGGATGCAACTCGCATAAGGCAGTGTGGAGGGAGTAACGGAGGG
AATGACGGGAAGCAGGCAGCGAAAGGAGTGAGATGGAAGATTCTTCTTCT
GCAGGAGTGTGCTTCTAAGCGCAATGAAAGGGGCCAATCCGCTTGCCTGC
ACACGTACGTATACACATAGAGGTAGAATTGACAGTGTGAGGTCTTTCTC
ATCTGCATTTACCCCTCGTTACAAGTGTATGGCTATCAAGGAAGTCTGAC
GGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|597404

>mRNA_6583-protein ID=mRNA_6583-protein|Name=jgi.p|Nanoce1779_2|597404|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MEDEGLWLRAFATAITTMTTTLMTVFVCVCNDLYKYVGGCCGARVWGCLQ
PVTTGVFLTLFQAGSKICFSLYFDFVFDLGLFCVYLHTTIRCRCVREAKG
GKARNTIKRFKETWREVVGVEGCNSHKAVWRE*
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mRNA from alignment at scaffold_18:203938..204944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6583 ID=mRNA_6583|Name=jgi.p|Nanoce1779_2|597404|organism=Nannochloropsis oceanica|type=mRNA|length=1007bp|location=Sequence derived from alignment at scaffold_18:203938..204944- (Nannochloropsis oceanica)
GTTCTGTACGTTTTGAGGGTGGGAGAGCTGCAGGGCTAGTGTCCGCGAAT
CAGCAGCAGCAGCAACGACAGCAGCAGCAGCAAGAGGAGGAGAAGAGGGA
TAAAATAAGGAAAAGAGGAGGAGGAAACTTGAGGAAAGGAAGAGGAGGAG
AAATAAGTAGAATAGAGGGGGGAGGGAGATGATTCGAGTTTAAGGCAGAA
GAGCGCATGCCATGCTTTTGATTCTTCATATTTTGGTAGGATGTAGCCTC
TATGCAGTAAGCGAGCATACAGACAAAAGAACGAGATAGTGAGAGGGGGC
AAGAGACATGGACTTAGAGAGAAAGAAGAGAGGGTGCGTGTGTAAGAGAG
CGAGGGTGGGAGGGAGAGAGTGAGAGGGAGAAAGGGAGAACAGGATGGAA
GATGAGGGTCTTTGGCTCCGCGCATTTGCGACAGCGATAACGACGATGAC
GACGACACTGATGACTGTATTTGTCTGTGTATGTAACGATCTGTACAAGT
ATGTGGGTGGATGCTGTGGTGCGAGGGTGTGGGGGTGTTTACAGCCTGTC
ACCACGGGGGTATTCCTCACCCTATTCCAAGCAGGCAGCAAAATCTGTTT
CTCTCTCTATTTTGATTTTGTTTTTGATCTCGGCCTCTTTTGTGTGTATT
TGCACACCACAATAAGATGTAGGTGTGTGAGAGAAGCAAAAGGGGGCAAG
GCCAGAAACACCATCAAGAGATTTAAAGAGACATGGAGAGAGGTTGTGGG
CGTAGAAGGATGCAACTCGCATAAGGCAGTGTGGAGGGAGTAACGGAGGG
AATGACGGGAAGCAGGCAGCGAAAGGAGTGAGATGGAAGATTCTTCTTCT
GCAGGAGTGTGCTTCTAAGCGCAATGAAAGGGGCCAATCCGCTTGCCTGC
ACACGTACGTATACACATAGAGGTAGAATTGACAGTGTGAGGTCTTTCTC
ATCTGCATTTACCCCTCGTTACAAGTGTATGGCTATCAAGGAAGTCTGAC
GGAGGGA
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Coding sequence (CDS) from alignment at scaffold_18:203938..204944-

>mRNA_6583 ID=mRNA_6583|Name=jgi.p|Nanoce1779_2|597404|organism=Nannochloropsis oceanica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_18:203938..204944- (Nannochloropsis oceanica)
ATGGAAGATGAGGGTCTTTGGCTCCGCGCATTTGCGACAGCGATAACGAC
GATGACGACGACACTGATGACTGTATTTGTCTGTGTATGTAACGATCTGT
ACAAGTATGTGGGTGGATGCTGTGGTGCGAGGGTGTGGGGGTGTTTACAG
CCTGTCACCACGGGGGTATTCCTCACCCTATTCCAAGCAGGCAGCAAAAT
CTGTTTCTCTCTCTATTTTGATTTTGTTTTTGATCTCGGCCTCTTTTGTG
TGTATTTGCACACCACAATAAGATGTAGGTGTGTGAGAGAAGCAAAAGGG
GGCAAGGCCAGAAACACCATCAAGAGATTTAAAGAGACATGGAGAGAGGT
TGTGGGCGTAGAAGGATGCAACTCGCATAAGGCAGTGTGGAGGGAGTAA
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Synonyms
Publications