jgi.p|Nanoce1779_2|597392, mRNA_6581 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597392
Unique NamemRNA_6581
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1849
Alignment locationscaffold_18:193099..195294 +

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Properties
Property NameValue
TranscriptId597478
TrackFilteredModels2
ProteinId597392
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:193099..195294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597392gene_6581Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597392mRNA_6581-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6581CDS_6581Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6581 ID=mRNA_6581|Name=jgi.p|Nanoce1779_2|597392|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp
CCTCCTTCTTCTTCTCCTCCTCCTGCTCCTCTACGTGGCAATCGGAAACC
TCCCATCACAGGCGCAGCCGCGGCCGGAGGCATAATAATCGTCACATCCT
CTCCGCTAGGTTGTCCGAGAGCTAATAATCTCTGTATCCTCACCCGATCC
TCCAAATTATGTTCTTCCAGCCGCTGGATTTCTTCCTTGAGGGAGACGGA
GGCGTGGGTCTGCTGCTTCACTTGATCGTCGAGGAGGAGCTTGTCTTGCT
CGAGACGCCAGATCTCGTCCTGGAGCTGGGTGATGGTGTTGTCAAGCCAG
TGGATTTCCTGAAAGGGAAGACGCAGATCACTCAGGGTGCTAAAAAATTC
TTCCTGCTCTTTGCCTGTCTCCGCCAGCACGACTTGGTAGCTGGCGAGAA
TGTCCTCAACGGTGGCATCCATCCCAATGTCCAGCGGGTCCTGGGTCTTG
CTGCTTCCATACCCGCGCCTGCCACTGCTTTGGTCCCCGGTTGTGACCAT
ACTGCTATTCCTGCTCCTCCTGTTGCAACTACTGGTGTTTCTGTGCTTAT
GAGATGTGTGGGCCGGTTACGGAACACGTCCAGACAAATGGTTCATCACG
CTTGTGCTTGTTTATGTGAGGCCTGCCCTGAAGCAAATTTTACATTTTGG
CAAAGGTTTTTGCGCACAGCCATGTAGACATACGCGCAGGGGACAGATGC
TCGCATATACTCCAGCTTGTCTGTAGGCCTGATGCGAGGGCCCATCGTAA
ACGATGGCAGAAACGAACGCCTATTGACCTTACTTCCCTAGTTCTGCACG
TCAACGCCGTCCACGAGGCCGATTGCGAATAAACAATAATGCAAGACTCC
ACAAAATGATGCCGTAAAGAATAGAACACAAGGCTGAGTAGGGGCACGGC
AGGAGGCAAGGGCCCAAGGGACACAGATAGGCTTGGCTCGACTTCGCCGT
CAGTGAACAACGGCTCACATGAAAATCACGCCTGCGTTACGTAAGAAAAT
GCAAATAATGACAAAGAGCACCCAGAGAAGATGGTCCCTGTCGCGCTCGA
ATGTGTTTAAGTACAAAGTGCAAGCGTGGGTCTTCAAAGCAAGTTGGTGG
GATGTGACGGCGGCATTGCTTTCCGTCAATGCCTCGATCGGCTCAGATGC
CCCCGCTCCTTACTGTTCTTCTCCCCACATCAGCCCCTGTCGAGCGTATG
CAGATGGGAGTGCTGATTCTTGGACGAGAGACTGGCGCCGAGCACTTGGT
GTTTGCTTGTGCGAATGTGGTGGGGCCGAGGCTACGCGGGAATGTTACTC
GCAGATGAAGTTGCCTCGCCATAATGCTTCAAACAACGCGATAACGGCCG
CCGAGTGGCTGAGGGCCGACACTTCGATGGGCGCTGTGTGTAGATGTCAT
GTGTGTGTATGGTGGAATTGTGAAAAAAATGAGGAGGAAGCGGGGATAGG
GCAAGACATCAGTGGTGACCGCCCCACGAGCTACACGTGTGTCATCAGAT
TTTATGTCATATCAAATCCGTCGTATTCAATCAACGTTGTTCGTTTGGAC
ACATCCCACATGACTTACGGTCAAACCACAGGCAGGTGAACGTGAATTTA
AAGACTGAGTCTTTGTCGGGATCGACTTAATGTAATTCTGCTTCTCCTGG
CGAGCAAGGCCTCATCTCCCCCGATCTCCAGGGCTCTCTCCTCATCCATG
CACACACCCCTTCCCGAAATAACATCTACAGGTATTTTCACTCATGTCTG
CAGCTGCAAAGAGGCCCCTCTCCTCCACCACCACCTCCTTCCTCTTCGTC
TTCTCCTCCTCCTTCGTCTGCATTTTTTCTTCTCCCCCGACTGCCTAGG
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protein sequence of jgi.p|Nanoce1779_2|597392

>mRNA_6581-protein ID=mRNA_6581-protein|Name=jgi.p|Nanoce1779_2|597392|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MKITPALRKKMQIMTKSTQRRWSLSRSNVFKYKVQAWVFKASWWDVTAAL
LSVNASIGSDAPAPYCSSPHISPCRAYADGSADSWTRDWRRALGVCLCEC
GGAEATRECYSQMKLPRHNASNNAITAAEWLRADTSMGAVCRCHVCVWWN
CEKNEEEAGIGQDISGDRPTSYTCVIRFYVISNPSYSINVVRLDTSHMTY
GQTTGR*
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mRNA from alignment at scaffold_18:193099..195294+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6581 ID=mRNA_6581|Name=jgi.p|Nanoce1779_2|597392|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp|location=Sequence derived from alignment at scaffold_18:193099..195294+ (Nannochloropsis oceanica)
CCTCCTTCTTCTTCTCCTCCTCCTGCTCCTCTACGTGGCAATCGGAAACC
TCCCATCACAGGCGCAGCCGCGGCCGGAGGCATAATAATCGTCACATCCT
CTCCGCTAGGTTGTCCGAGAGCTAATAATCTCTGTATCCTCACCCGATCC
TCCAAATTATGTTCTTCCAGCCGCTGGATTTCTTCCTTGAGGGAGACGGA
GGCGTGGGTCTGCTGCTTCACTTGATCGTCGAGGAGGAGCTTGTCTTGCT
CGAGACGCCAGATCTCGTCCTGGAGCTGGGTGATGGTGTTGTCAAGCCAG
TGGATTTCCTGAAAGGGAAGACGCAGATCTGTCGGAGAGGGAGGGAGGGA
GGGAGGGAGGGATTTAGAGGGAGAGACAAGAAGCGGATGAGTATGATAGG
TTTGGCTGGATGGGTCCACCGCCTTCCTTCCTCCCCTTTGGTTGCCCCTG
GTACCTACCACTCAGGGTGCTAAAAAATTCTTCCTGCTCTTTGCCTGTCT
CCGCCAGCACGACTTGGTAGCTGGCGAGAATGTCCTGTTTGTTGTTGTGG
GGTGCATTGGATGAATAATGGTGTGATAACCAAAAGGAAACAATTGGAGC
GGTCAGCTTATGCTTGATTCATGCTGTGGGTGGTACAAAGCCTCTCAATA
TAAATGAATGAATGATTGAACGAATAAAATAGATAAAGAAACGGCGACAA
TAAAAGACGATACACCTGACGGGAGCTTGCTGCATGACCACTCAAACTTA
CCTCAACGGTGGCATCCATCCCAATGTCCAGCGGGTCCTGGGTCTTGCTG
CTTCCATACCCGCGCCTGCCACTGCTTTGGTCCCCGGTTGTGACCATACT
GCTATTCCTGCTCCTCCTGTTGCAACTACTGGTGTTTCTGTGCTTATGAG
ATGTGTGGGCCGGTTACGGAACACGTCCAGACAAATGGTTCATCACGCTT
GTGCTTGTTTATGTGAGGCCTGCCCTGAAGCAAATTTTACATTTTGGCAA
AGGTTTTTGCGCACAGCCATGTAGACATACGCGCAGGGGACAGATGCTCG
CATATACTCCAGCTTGTCTGTAGGCCTGATGCGAGGGCCCATCGTAAACG
ATGGCAGAAACGAACGCCTATTGACCTTACTTCCCTAGTTCTGCACGTCA
ACGCCGTCCACGAGGCCGATTGCGAATAAACAATAATGCAAGACTCCACA
AAATGATGCCGTAAAGAATAGAACACAAGGCTGAGTAGGGGCACGGCAGG
AGGCAAGGGCCCAAGGGACACAGATAGGCTTGGCTCGACTTCGCCGTCAG
TGAACAACGGCTCACATGAAAATCACGCCTGCGTTACGTAAGAAAATGCA
AATAATGACAAAGAGCACCCAGAGAAGATGGTCCCTGTCGCGCTCGAATG
TGTTTAAGTACAAAGTGCAAGCGTGGGTCTTCAAAGCAAGTTGGTGGGAT
GTGACGGCGGCATTGCTTTCCGTCAATGCCTCGATCGGCTCAGATGCCCC
CGCTCCTTACTGTTCTTCTCCCCACATCAGCCCCTGTCGAGCGTATGCAG
ATGGGAGTGCTGATTCTTGGACGAGAGACTGGCGCCGAGCACTTGGTGTT
TGCTTGTGCGAATGTGGTGGGGCCGAGGCTACGCGGGAATGTTACTCGCA
GATGAAGTTGCCTCGCCATAATGCTTCAAACAACGCGATAACGGCCGCCG
AGTGGCTGAGGGCCGACACTTCGATGGGCGCTGTGTGTAGATGTCATGTG
TGTGTATGGTGGAATTGTGAAAAAAATGAGGAGGAAGCGGGGATAGGGCA
AGACATCAGTGGTGACCGCCCCACGAGCTACACGTGTGTCATCAGATTTT
ATGTCATATCAAATCCGTCGTATTCAATCAACGTTGTTCGTTTGGACACA
TCCCACATGACTTACGGTCAAACCACAGGCAGGTGAACGTGAATTTAAAG
ACTGAGTCTTTGTCGGGATCGACTTAATGTAATTCTGCTTCTCCTGGCGA
GCAAGGCCTCATCTCCCCCGATCTCCAGGGCTCTCTCCTCATCCATGCAC
ACACCCCTTCCCGAAATAACATCTACAGGTATTTTCACTCATGTCTGCAG
CTGCAAAGAGGCCCCTCTCCTCCACCACCACCTCCTTCCTCTTCGTCTTC
TCCTCCTCCTTCGTCTGCATTTTTTCTTCTCCCCCGACTGCCTAGG
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Coding sequence (CDS) from alignment at scaffold_18:193099..195294+

>mRNA_6581 ID=mRNA_6581|Name=jgi.p|Nanoce1779_2|597392|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_18:193099..195294+ (Nannochloropsis oceanica)
ATGAAAATCACGCCTGCGTTACGTAAGAAAATGCAAATAATGACAAAGAG
CACCCAGAGAAGATGGTCCCTGTCGCGCTCGAATGTGTTTAAGTACAAAG
TGCAAGCGTGGGTCTTCAAAGCAAGTTGGTGGGATGTGACGGCGGCATTG
CTTTCCGTCAATGCCTCGATCGGCTCAGATGCCCCCGCTCCTTACTGTTC
TTCTCCCCACATCAGCCCCTGTCGAGCGTATGCAGATGGGAGTGCTGATT
CTTGGACGAGAGACTGGCGCCGAGCACTTGGTGTTTGCTTGTGCGAATGT
GGTGGGGCCGAGGCTACGCGGGAATGTTACTCGCAGATGAAGTTGCCTCG
CCATAATGCTTCAAACAACGCGATAACGGCCGCCGAGTGGCTGAGGGCCG
ACACTTCGATGGGCGCTGTGTGTAGATGTCATGTGTGTGTATGGTGGAAT
TGTGAAAAAAATGAGGAGGAAGCGGGGATAGGGCAAGACATCAGTGGTGA
CCGCCCCACGAGCTACACGTGTGTCATCAGATTTTATGTCATATCAAATC
CGTCGTATTCAATCAACGTTGTTCGTTTGGACACATCCCACATGACTTAC
GGTCAAACCACAGGCAGGTGA
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Synonyms
Publications