jgi.p|Nanoce1779_2|122241, mRNA_6577 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|122241
Unique Name	mRNA_6577
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2154
Alignment location	scaffold_18:185573..188527 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	122327
Track	FilteredModels2
ProteinId	122241

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:185573..188527 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|122241	gene_6577	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|122241	mRNA_6577-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6577	CDS_6577	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:185573..188527+
coding sequence from alignment at scaffold_18:185573..188527+

mRNA sequence

>mRNA_6577 ID=mRNA_6577|Name=jgi.p|Nanoce1779_2|122241|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp
AAACACAGCTGACCAGACCAGATCTGGCCCATCTACGCACGATGATGGTG
GCCTGTGCCACCAAATCATGAACCCCACGACCGCTGCCGCCCATATAAGA
CCTCCAGCTACCAATGGATGACACCTTTGGTGATATGACGCCCACTCTGC
GGGATGGCGTGGAGGATGACTATCCGGCGGAGGAAGAGTACGACTACGGC
TACACTGACAGTACCACCATGGAGGGCGATGACGGCTTTAACATGCCTGT
GTCCGGAGAGGCCGACGGTCAAGGCAACCTGTTGAGCTCCCAGAACAACC
TGAATGTGGAGGAAAATGACAACCTTGCATTTGGTAAACCCAGGATAGAT
CCCGCTAGTGGGAACATCGACGACCCCAACGCGGACGTCAGCTTCGACCG
GAACTCCACGCGATTCACCCTCAATGGCAATTTAGCCAAATGGAGGGTCA
AGCACAGGCCTGTCAAAATCTCTCAAAATGGGACTCAGCTCTGTGGCACA
AAGATGAGTTTCACAAGTTATTTTCAAAGCCTGTTGCACCGTGCATATGC
CGCCACCTTTTCTCCTTTCTCTGGGTCGTCATCGAGCTCAAGCTCAAGTG
GCAAGAACACCAACACCAGCGGTACTTCGGGCAGTGACGACACCATTACT
ACTGTAGCATGTAGCACTGCCTCCTCCACGTCCTTCTCGCCGAGAAAGTC
CGTGATCCAAAAACTCAACTGCGCGCGGAGTCAACGTCGCACGGGACAGA
GCGGACAGGCCTCCCGAGGTGGCAATGTTGAAGCTTTCCGAGGAAAGGAG
AATGGAATTATGACAAAATTTGAATCCACTCCCTCCTCTTCTTCTCCTGT
GCCTCCTTTGTCTCCAGCACTCGAGGACATGATCTCTCCGCGTGTATTTA
ATACCACGGGGCAGGGTGTGGGTGAGGGCAGGAGGGACGGGGATAAGGTG
GAGGAGGAGAAACGGCGAACATTTAATGGACCAGTTTGGCAGACGACCTT
GACAATTATGCAGCAGCAGATGCGGCCTCGTCCAATTCCCGAGCGAGGCT
CAGTGAAAACAGGACCAATGGCAGGAATGCCTGTGAGCCCCCTTCGTTCA
TCTCCACCTTTCCAAGCACCCGTGCAGCGGGTGACACTACCAACGACATC
GCAGCAGGCCTGTGAGATGAATGCCCGCGCTCCTCCGGTGCGAGCGTCCG
CAACACAAGGACGGTCGCCTCCCCTCCCTCCCCTTCACTCTCAAGCAATG
GGAGCACTCACACGGGTAGCAGCAGAAGCAGCGGCAACAGCAAAATTTAT
ACCAACAGCCACAAATATGGCTCCAGCGATGAGGACAACACCTCTTTCGT
CTGCAACTGCTCCCCTTCCTTTCGCACAGTCGGCATCTTTATTGTTACCC
ACGCCAGCCCAGGTATTTTCAAGAGGAAAACGTCGCCCGCGTGCGGGACT
TCAGACTTCGTCGTCACCATCACTGTTGAACGGAAAGACAAAGCGAAAAT
TTTCAGCTTATGAGGGTACGGAGGGCCAACAAGTAACTTGCATGGCTCCA
CTCCCCATGCTGCCTGCACTACCGTCGACGGCGGACGCGTTGGGCCTCCT
TCCGCTAAGGCTGACACTGAATTTACAGCAGCAGAAGCAGCGCCAGCAGC
AGAGACAGCAGCGGCGGCAGCGCCAGCAGCAGAGGCAGGATAAGCACCGC
CAACAATACCGGCAGAAGCAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAAAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACATCAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACATGTAAGCCGGCTCTGTCAGCATTGGCGGCAGCAGCAGCAGCA
GCAGCAACATCAATCGCAACAGTACGGCAGAATCCAGCATCACCAGGAAC
CGGA

protein sequence of jgi.p|Nanoce1779_2|122241

>mRNA_6577-protein ID=mRNA_6577-protein|Name=jgi.p|Nanoce1779_2|122241|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp
MDDTFGDMTPTLRDGVEDDYPAEEEYDYGYTDSTTMEGDDGFNMPVSGEA
DGQGNLLSSQNNLNVEENDNLAFGKPRIDPASGNIDDPNADVSFDRNSTR
FTLNGNLAKWRVKHRPVKISQNGTQLCGTKMSFTSYFQSLLHRAYAATFS
PFSGSSSSSSSSGKNTNTSGTSGSDDTITTVACSTASSTSFSPRKSVIQK
LNCARSQRRTGQSGQASRGGNVEAFRGKENGIMTKFESTPSSSSPVPPLS
PALEDMISPRVFNTTGQGVGEGRRDGDKVEEEKRRTFNGPVWQTTLTIMQ
QQMRPRPIPERGSVKTGPMAGMPVSPLRSSPPFQAPVQRVTLPTTSQQAC
EMNARAPPVRASATQGRSPPLPPLHSQAMGALTRVAAEAAATAKFIPTAT
NMAPAMRTTPLSSATAPLPFAQSASLLLPTPAQVFSRGKRRPRAGLQTSS
SPSLLNGKTKRKFSAYEGTEGQQVTCMAPLPMLPALPSTADALGLLPLRL
TLNLQQQKQRQQQRQQRRQRQQQRQDKHRQQYRQKQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNNNNNNNNNNNNNM*

mRNA from alignment at scaffold_18:185573..188527+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6577 ID=mRNA_6577|Name=jgi.p|Nanoce1779_2|122241|organism=Nannochloropsis oceanica|type=mRNA|length=2955bp|location=Sequence derived from alignment at scaffold_18:185573..188527+ (Nannochloropsis oceanica)
AAACACAGCTGACCAGACCAGATCTGGCCCATCTACGCACGATGATGGTG
GCCTGTGCCACCAAATCATGAACCCCACGACCGCTGCCGCCCATATAAGA
CCTCCAGCTACCAATGGATGACACCTTTGGTGATATGACGCCCACTCTGC
GGGATGGCGTGGAGGATGACTATCCGGCGGAGGAAGAGTACGACTACGGC
TACACTGACAGTACCACCATGGAGGGCGATGACGGCTTTAACATGCCTGT
GTCCGGAGAGGCCGACGGTCAAGGCAACCTGTTGAGCTCCCAGAACAACC
TGAATGTGGAGGAAAATGACAACCTTGCATTTGGTAAACCCAGGATAGAT
CCCGCTAGTGGGAACATCGACGACCCCAACGCGGACGTCAGCTTCGACCG
GAACTCCACGCGATTCACCCTCAATGGCAATTTAGCCAAATGGAGGGTCA
AGCACAGGCCTGTCAAAATCTCTCAAAATGGGACTCAGCTCTGTGGCACA
AAGATGAGTTTCACAAGTTATTTTCAAAGCCTGTTGCACCGTGCATATGC
CGCCACCTTTTCTCCTTTCTCTGGGTCGTCATCGAGCTCAAGCTCAAGTG
GCAAGAACACCAACACCAGCGGTACTTCGGGCAGTGACGACACCATTACT
ACTGTAGCATGTAGCACTGCCTCCTCCACGTCCTTCTCGCCGAGAAAGTC
CGTGATCCAAAAACTCAACTGCGCGCGGAGTCAACGTCGCACGGGACAGA
GCGGACAGGCCTCCCGAGGTGGCAATGTTGAAGCTTTCCGAGGAAAGGAG
AATGGAATTATGACAAAATTTGAATCCACTCCCTCCTCTTCTTCTCCTGT
GCCTCCTTTGTCTCCAGCACTCGAGGACATGATCTCTCCGCGTGTATTTA
ATACCACGGGGCAGGGTGTGGGTGAGGGCAGGAGGGACGGGGATAAGGTG
GAGGAGGAGAAACGGCGAACATTTAATGGACCAGTTTGGCAGACGACCTT
GACAATTATGCAGGTACGTGAGGCTGAGGAAGAAGGGGAGGATGGGATTG
AGGAGGAATGGCGCTTGGCTGGGATGCCGAAAAAAGAGGATAATTTTCAC
GAAGACGAGCAAGATGTACGTCATCCCGGTGACGACGATGGTGGGAAATA
TGACATTCCTTTGCCTTTAGCGGTGGATACGCAAACGGGAATCGATTTGG
ATGATGCAATGGTAACAAGGGTAGAAGCTACAGCAGCAAGCAAAGCAGCA
GCAGCAGCAGCAACATCAACAGAAACGGCAGCTGAAGAGGGAAGGGGCAA
GGAGTCCGACGCCATGTTTGTCCTTTCCTCCCCGCCACATGTAGCGGCAC
CGAGACAAGCACCAGCTATGGTGTCTTCATCTCCACTATCATCACCTCTA
GTACGCTCTACTGCATCGCCAACGATGCAACAACCGCCGCGGCAGTCTCA
TGCATCACAAGGTCAATCTCCCATGGAGCATAAATCAGCAGCAGCAGCAG
CAGCAGCAATGCCACCACCACCACCACCACCACCACCACAACGTCCCATG
AGATCTCAAGCGCCGCAGCTTCCACGATCGCGGCCATCACCACCATCGCT
TTCTGTGCCTCCTTTGCCACCACATGTACGGGAAAGATCCCCCAAATCTC
TCCCACCTACATCACTACCCCTCCAGCCGTCATGGCAAGCTCCGCCCGTT
GCGCCTAGAGAGCGTCCGTCAGCCGAGAAAGCGCCATCTCCAGTGCGGGA
TAGAGCTTTCAAATTTAATTCACAGCTTGCCTTTCCACCTTCATTATCGC
AACCACCCCTGCAGCAGCAGATGCGGCCTCGTCCAATTCCCGAGCGAGGC
TCAGTGAAAACAGGACCAATGGCAGGAATGCCTGTGAGCCCCCTTCGTTC
ATCTCCACCTTTCCAAGCACCCGTGCAGCGGGTGACACTACCAACGACAT
CGCAGCAGGCCTGTGAGATGAATGCCCGCGCTCCTCCGGTGCGAGCGTCC
GCAACACAAGGACGGTCGCCTCCCCTCCCTCCCCTTCACTCTCAAGCAAT
GGGAGCACTCACACGGGTAGCAGCAGAAGCAGCGGCAACAGCAAAATTTA
TACCAACAGCCACAAATATGGCTCCAGCGATGAGGACAACACCTCTTTCG
TCTGCAACTGCTCCCCTTCCTTTCGCACAGTCGGCATCTTTATTGTTACC
CACGCCAGCCCAGGTATTTTCAAGAGGAAAACGTCGCCCGCGTGCGGGAC
TTCAGACTTCGTCGTCACCATCACTGTTGAACGGAAAGACAAAGCGAAAA
TTTTCAGCTTATGAGGGTACGGAGGGCCAACAAGTAACTTGCATGGCTCC
ACTCCCCATGCTGCCTGCACTACCGTCGACGGCGGACGCGTTGGGCCTCC
TTCCGCTAAGGCTGACACTGAATTTACAGCAGCAGAAGCAGCGCCAGCAG
CAGAGACAGCAGCGGCGGCAGCGCCAGCAGCAGAGGCAGGATAAGCACCG
CCAACAATACCGGCAGAAGCAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAAAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACATCAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACATGTAAGCCGGCTCTGTCAGCATTGGCGGCAGCAGCAGCAGC
AGCAGCAACATCAATCGCAACAGTACGGCAGAATCCAGCATCACCAGGAA
CCGGA

Coding sequence (CDS) from alignment at scaffold_18:185573..188527+

>mRNA_6577 ID=mRNA_6577|Name=jgi.p|Nanoce1779_2|122241|organism=Nannochloropsis oceanica|type=CDS|length=3900bp|location=Sequence derived from alignment at scaffold_18:185573..188527+ (Nannochloropsis oceanica)
ATGGATGACACCTTTGGTGATATGACGCCCACTCTGCGGGATGGCGTGGA
GGATGACTATCCGGCGGAGGAAGAGTACGACTACGGCTACACTGACAGTA
CCACCATGGAGGGCGATGACGGCTTTAACATGCCTGTGTCCGGAGAGGCC
GACGGTCAAGGCAACCTGTTGAGCTCCCAGAACAACCTGAATGTGGAGGA
AAATGACAACCTTGCATTTGGTAAACCCAGGATAGATCCCGCTAGTGGGA
ACATCGACGACCCCAACGCGGACGTCAGCTTCGACCGGAACTCCACGCGA
TTCACCCTCAATGGCAATTTAGCCAAATGGAGGGTCAAGCACAGGCCTGT
CAAAATCTCTCAAAATGGGACTCAGCTCTGTGGCACAAAGATGAGTTTCA
CAAGTTATTTTCAAAGCCTGTTGCACCGTGCATATGCCGCCACCTTTTCT
CCTTTCTCTGGGTCGTCATCGAGCTCAAGCTCAAGTGGCAAGAACACCAA
CACCAGCGGTACTTCGGGCAGTGACGACACCATTACTACTGTAGCATGTA
GCACTGCCTCCTCCACGTCCTTCTCGCCGAGAAAGTCCGTGATCCAAAAA
CTCAACTGCGCGCGGAGTCAACGTCGCACGGGACAGAGCGGACAGGCCTC
CCGAGGTGGCAATGTTGAAGCTTTCCGAGGAAAGGAGAATGGAATTATGA
CAAAATTTGAATCCACTCCCTCCTCTTCTTCTCCTGTGCCTCCTTTGTCT
CCAGCACTCGAGGACATGATCTCTCCGCGTGTATTTAATACCACGGGGCA
GGGTGTGGGTGAGGGCAGGAGGGACGGGGATAAGGTGGAGGAGGAGAAAC
GGCGAACATTTAATGGACCAGTTTGGCAGACGACCTTGACAATTATGCAG
CAGCAGATGCGGCCTCGTCCAATTCCCGAGCGAGGCTCAGTGAAAACAGG
ACCAATGGCAGGAATGCCTGTGAGCCCCCTTCGTTCATCTCCACCTTTCC
AAGCACCCGTGCAGCGGGTGACACTACCAACGACATCGCAGCAGGCCTGT
GAGATGAATGCCCGCGCTCCTCCGGTGCGAGCGTCCGCAACACAAGGACG
GTCGCCTCCCCTCCCTCCCCTTCACTCTCAAGCAATGGGAGCACTCACAC
GGGTAGCAGCAGAAGCAGCGGCAACAGCAAAATTTATACCAACAGCCACA
AATATGGCTCCAGCGATGAGGACAACACCTCTTTCGTCTGCAACTGCTCC
CCTTCCTTTCGCACAGTCGGCATCTTTATTGTTACCCACGCCAGCCCAGG
TATTTTCAAGAGGAAAACGTCGCCCGCGTGCGGGACTTCAGACTTCGTCG
TCACCATCACTGTTGAACGGAAAGACAAAGCGAAAATTTTCAGCTTATGA
GGGTACGGAGGGCCAACAAGTAACTTGCATGGCTCCACTCCCCATGCTGC
CTGCACTACCGTCGACGGCGGACGCGTTGGGCCTCCTTCCGCTAAGGCTG
ACACTGAATTTACAGCAGCAGAAGCAGCGCCAGCAGCAGAGACAGCAGCG
GCGGCAGCGCCAGCAGCAGAGGCAGGATAAGCACCGCCAACAATACCGGC
AGAAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAAAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
TCAACAACAACAACAACAACAACAACAACAACAACAACAACAACATGTAA
ATGGATGACACCTTTGGTGATATGACGCCCACTCTGCGGGATGGCGTGGA
GGATGACTATCCGGCGGAGGAAGAGTACGACTACGGCTACACTGACAGTA
CCACCATGGAGGGCGATGACGGCTTTAACATGCCTGTGTCCGGAGAGGCC
GACGGTCAAGGCAACCTGTTGAGCTCCCAGAACAACCTGAATGTGGAGGA
AAATGACAACCTTGCATTTGGTAAACCCAGGATAGATCCCGCTAGTGGGA
ACATCGACGACCCCAACGCGGACGTCAGCTTCGACCGGAACTCCACGCGA
TTCACCCTCAATGGCAATTTAGCCAAATGGAGGGTCAAGCACAGGCCTGT
CAAAATCTCTCAAAATGGGACTCAGCTCTGTGGCACAAAGATGAGTTTCA
CAAGTTATTTTCAAAGCCTGTTGCACCGTGCATATGCCGCCACCTTTTCT
CCTTTCTCTGGGTCGTCATCGAGCTCAAGCTCAAGTGGCAAGAACACCAA
CACCAGCGGTACTTCGGGCAGTGACGACACCATTACTACTGTAGCATGTA
GCACTGCCTCCTCCACGTCCTTCTCGCCGAGAAAGTCCGTGATCCAAAAA
CTCAACTGCGCGCGGAGTCAACGTCGCACGGGACAGAGCGGACAGGCCTC
CCGAGGTGGCAATGTTGAAGCTTTCCGAGGAAAGGAGAATGGAATTATGA
CAAAATTTGAATCCACTCCCTCCTCTTCTTCTCCTGTGCCTCCTTTGTCT
CCAGCACTCGAGGACATGATCTCTCCGCGTGTATTTAATACCACGGGGCA
GGGTGTGGGTGAGGGCAGGAGGGACGGGGATAAGGTGGAGGAGGAGAAAC
GGCGAACATTTAATGGACCAGTTTGGCAGACGACCTTGACAATTATGCAG
CAGCAGATGCGGCCTCGTCCAATTCCCGAGCGAGGCTCAGTGAAAACAGG
ACCAATGGCAGGAATGCCTGTGAGCCCCCTTCGTTCATCTCCACCTTTCC
AAGCACCCGTGCAGCGGGTGACACTACCAACGACATCGCAGCAGGCCTGT
GAGATGAATGCCCGCGCTCCTCCGGTGCGAGCGTCCGCAACACAAGGACG
GTCGCCTCCCCTCCCTCCCCTTCACTCTCAAGCAATGGGAGCACTCACAC
GGGTAGCAGCAGAAGCAGCGGCAACAGCAAAATTTATACCAACAGCCACA
AATATGGCTCCAGCGATGAGGACAACACCTCTTTCGTCTGCAACTGCTCC
CCTTCCTTTCGCACAGTCGGCATCTTTATTGTTACCCACGCCAGCCCAGG
TATTTTCAAGAGGAAAACGTCGCCCGCGTGCGGGACTTCAGACTTCGTCG
TCACCATCACTGTTGAACGGAAAGACAAAGCGAAAATTTTCAGCTTATGA
GGGTACGGAGGGCCAACAAGTAACTTGCATGGCTCCACTCCCCATGCTGC
CTGCACTACCGTCGACGGCGGACGCGTTGGGCCTCCTTCCGCTAAGGCTG
ACACTGAATTTACAGCAGCAGAAGCAGCGCCAGCAGCAGAGACAGCAGCG
GCGGCAGCGCCAGCAGCAGAGGCAGGATAAGCACCGCCAACAATACCGGC
AGAAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAAAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
TCAACAACAACAACAACAACAACAACAACAACAACAACAACAACATGTAA

Synonyms

Publications