jgi.p|Nanoce1779_2|597383, mRNA_6576 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597383
Unique NamemRNA_6576
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length504
Alignment locationscaffold_18:184709..185295 -

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Properties
Property NameValue
TranscriptId597469
TrackFilteredModels2
ProteinId597383
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:184709..185295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597383gene_6576Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597383mRNA_6576-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6576CDS_6576Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6576 ID=mRNA_6576|Name=jgi.p|Nanoce1779_2|597383|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
CAACAGCAGCCACCTATTGAGCCAGTCAGATCGCGCGCCTGTGGAGGGGA
GTGATTAAAGCAAAGACAACTCGACACAACAAGCCCAGCCGTACAGCTGC
ATCATGGCGGCCACACTCGAGACCCTGAAAGACCGCATCATCTGCGTGAT
TACAAACGATGGACGCAACATTGTCGGCGTGCTCAAGGGCTTCGACCAAA
CCACCAACATCATCCTGCAAGAATGCCATGAGCGCGTCTTTTCCACCACC
GCGGGCGTAGAGCAAGTGCCCTTGGGCTTGTACATTGTGAGAGGGGACAA
CATTGCCGTCGTCGGCGAGATGGACGAGGAGGCGGATGCGGCGTTGGACT
TATCGACCCTCAAGGGCGACCCACTTAAGCCCGTCATACATTAGCAACTT
AGTGATTGAGAAAATCGTGTGTATGTGTGTGTGTGTGTGTGTGTCCATAG
GTGATAGTCGGCAAAAGCCACCTCAAATGTGTGCAGAAACTTTATGGATT
GAAG
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protein sequence of jgi.p|Nanoce1779_2|597383

>mRNA_6576-protein ID=mRNA_6576-protein|Name=jgi.p|Nanoce1779_2|597383|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MAATLETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTA
GVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH*
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mRNA from alignment at scaffold_18:184709..185295-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6576 ID=mRNA_6576|Name=jgi.p|Nanoce1779_2|597383|organism=Nannochloropsis oceanica|type=mRNA|length=587bp|location=Sequence derived from alignment at scaffold_18:184709..185295- (Nannochloropsis oceanica)
CAACAGCAGCCACCTATTGAGCCAGTCAGATCGCGCGCCTGTGGAGGGGA
GTGATTAAAGCAAAGACAACTCGACACAACAAGCCCAGCCGTACAGCTGC
ATCATGGCGGCCACACTCGAGACCCTGAAAGACCGTAAGTCCAAGAATTG
CAAAATTCTCAATAAAGCCACTATCCGACCATTCACCTCGCTCTTCACTT
CCACCTCGCCTTACCAGGCATCATCTGCGTGATTACAAACGATGGACGCA
ACATTGTCGGCGTGCTCAAGGGCTTCGACCAAACCACCAACATCATCCTG
CAAGAATGCCATGAGCGCGTCTTTTCCACCACCGCGGGCGTAGAGCAAGT
GCCCTTGGGCTTGTACATTGTGAGAGGGGACAACATTGCCGTCGTCGGCG
AGATGGACGAGGAGGCGGATGCGGCGTTGGACTTATCGACCCTCAAGGGC
GACCCACTTAAGCCCGTCATACATTAGCAACTTAGTGATTGAGAAAATCG
TGTGTATGTGTGTGTGTGTGTGTGTGTCCATAGGTGATAGTCGGCAAAAG
CCACCTCAAATGTGTGCAGAAACTTTATGGATTGAAG
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Coding sequence (CDS) from alignment at scaffold_18:184709..185295-

>mRNA_6576 ID=mRNA_6576|Name=jgi.p|Nanoce1779_2|597383|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_18:184709..185295- (Nannochloropsis oceanica)
GCATCATCTGCGTGATTACAAACGATGGACGCAACATTGTCGGCGTGCTC
AAGGGCTTCGACCAAACCACCAACATCATCCTGCAAGAATGCCATGAGCG
CGTCTTTTCCACCACCGCGGGCGTAGAGCAAGTGCCCTTGGGCTTGTACA
TTGTGAGAGGGGACAACATTGCCGTCGTCGGCGAGATGGACGAGGAGGCG
GATGCGGCGTTGGACTTATCGACCCTCAAGGGCGACCCACTTAAGCCCGT
CATACATTAGATGGCGGCCACACTCGAGACCCTGAAAGACCGCATCATCT
GCGTGATTACAAACGATGGACGCAACATTGTCGGCGTGCTCAAGGGCTTC
GACCAAACCACCAACATCATCCTGCAAGAATGCCATGAGCGCGTCTTTTC
CACCACCGCGGGCGTAGAGCAAGTGCCCTTGGGCTTGTACATTGTGAGAG
GGGACAACATTGCCGTCGTCGGCGAGATGGACGAGGAGGCGGATGCGGCG
TTGGACTTATCGACCCTCAAGGGCGACCCACTTAAGCCCGTCATACATTA
GATGGCGGCCACACTCGAGACCCTGAAAGACC
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Synonyms
Publications