jgi.p|Nanoce1779_2|597382, mRNA_6575 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597382
Unique NamemRNA_6575
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1065
Alignment locationscaffold_18:183463..184527 +

Link to JBrowse

Properties
Property NameValue
TranscriptId597468
TrackFilteredModels2
ProteinId597382
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:183463..184527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597382gene_6575Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597382mRNA_6575-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6575CDS_6575Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6575 ID=mRNA_6575|Name=jgi.p|Nanoce1779_2|597382|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp
TCAGCCCCCTCCTCACACCACCATGTTTGAAGCCCGGCTTACGGAGGGAA
ACCTCCTGAAGAAGATCATCGAGGCCATCAAGGACCTGGTCCAAGAAGCT
AACGTGGACTGCTCCGACACGGGACTGACCATGCAGGCTATGGATGCTTC
CCACGTCTCCCTCTGCTCCCTCAACATGCGCTCCGGCGGCTTTGACCACT
TCAGGTGCGATCGCTCAATCTCCTTGGGTCTGAACTTAAGCAACCTCGGC
AAGATCCTCAAGTGCGCAGGGAACGAGGACGTAGTTACGCTCAAGGCGGA
AGACGAGCCCGATACATTGACCCTCATGTTCGAAGCCCCCAACCAAGAGC
GCATCTCCGACTTCGAGCTCAAACTGATGGACATTGAGACAGAGCACCTG
GGCATTCCCAATGAGGAGTACAAATGCACGATTTCCATGCCCTCCGTTGA
GTTTCAACGCATTATTCGCGACTTGGCCGTGATTGGCGAGACGTGCATCA
TCAGCTGCACCAAGGAAGGAGTCCGCTTCTCAGTCTCAGGGGACCTGGGC
AAGGGGAATGTAACGGTGCGTCAATCATCGGCGGTGGACGGCGACGAGAA
GGATCAGGTGAAGATCCAGATGGAGGAGCCTGTCACGCTGAACTTTGCTT
TGCGATACTTAGGTTTCTTCACCAAGGCAACCCCCCTTGGCCCGACGGTG
AAATTGCACATGTCCCCAGATGTGCCCATCGTGGTGGAGTACCCGATGAA
AGACATTGGTTCGATCTCTTACTTCTTGGCGCCCAAGATCGATGAAGATT
AACAGGGGTGCGGGGGAGAGCGAAGGAAGGAGGGAGGGAAGGTGAGAAAG
TAGCGGGGGAAAGCAGGAAACGCAATTATTTTAGATGTTAAGAGTGCAGG
AAAAGTAAGAAGAAAGGTGTGTGTCCTGAATAGATGATGAACTGCATTGG
GCAGGGGTTCCCTTGACGAGAAAGGCCGTGAGTGTCCACGAGGAAGGAAG
GGTGGGAGGGGAAGGGAGAGAGGGACTGAAGAGAGCACCAAAGAATATAA
CACATACGTATCAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|597382

>mRNA_6575-protein ID=mRNA_6575-protein|Name=jgi.p|Nanoce1779_2|597382|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSL
NMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLT
LMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRD
LAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQM
EEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISY
FLAPKIDED*
back to top

mRNA from alignment at scaffold_18:183463..184527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6575 ID=mRNA_6575|Name=jgi.p|Nanoce1779_2|597382|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp|location=Sequence derived from alignment at scaffold_18:183463..184527+ (Nannochloropsis oceanica)
TCAGCCCCCTCCTCACACCACCATGTTTGAAGCCCGGCTTACGGAGGGAA
ACCTCCTGAAGAAGATCATCGAGGCCATCAAGGACCTGGTCCAAGAAGCT
AACGTGGACTGCTCCGACACGGGACTGACCATGCAGGCTATGGATGCTTC
CCACGTCTCCCTCTGCTCCCTCAACATGCGCTCCGGCGGCTTTGACCACT
TCAGGTGCGATCGCTCAATCTCCTTGGGTCTGAACTTAAGCAACCTCGGC
AAGATCCTCAAGTGCGCAGGGAACGAGGACGTAGTTACGCTCAAGGCGGA
AGACGAGCCCGATACATTGACCCTCATGTTCGAAGCCCCCAACCAAGAGC
GCATCTCCGACTTCGAGCTCAAACTGATGGACATTGAGACAGAGCACCTG
GGCATTCCCAATGAGGAGTACAAATGCACGATTTCCATGCCCTCCGTTGA
GTTTCAACGCATTATTCGCGACTTGGCCGTGATTGGCGAGACGTGCATCA
TCAGCTGCACCAAGGAAGGAGTCCGCTTCTCAGTCTCAGGGGACCTGGGC
AAGGGGAATGTAACGGTGCGTCAATCATCGGCGGTGGACGGCGACGAGAA
GGATCAGGTGAAGATCCAGATGGAGGAGCCTGTCACGCTGAACTTTGCTT
TGCGATACTTAGGTTTCTTCACCAAGGCAACCCCCCTTGGCCCGACGGTG
AAATTGCACATGTCCCCAGATGTGCCCATCGTGGTGGAGTACCCGATGAA
AGACATTGGTTCGATCTCTTACTTCTTGGCGCCCAAGATCGATGAAGATT
AACAGGGGTGCGGGGGAGAGCGAAGGAAGGAGGGAGGGAAGGTGAGAAAG
TAGCGGGGGAAAGCAGGAAACGCAATTATTTTAGATGTTAAGAGTGCAGG
AAAAGTAAGAAGAAAGGTGTGTGTCCTGAATAGATGATGAACTGCATTGG
GCAGGGGTTCCCTTGACGAGAAAGGCCGTGAGTGTCCACGAGGAAGGAAG
GGTGGGAGGGGAAGGGAGAGAGGGACTGAAGAGAGCACCAAAGAATATAA
CACATACGTATCAAA
back to top

Coding sequence (CDS) from alignment at scaffold_18:183463..184527+

>mRNA_6575 ID=mRNA_6575|Name=jgi.p|Nanoce1779_2|597382|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_18:183463..184527+ (Nannochloropsis oceanica)
ATGTTTGAAGCCCGGCTTACGGAGGGAAACCTCCTGAAGAAGATCATCGA
GGCCATCAAGGACCTGGTCCAAGAAGCTAACGTGGACTGCTCCGACACGG
GACTGACCATGCAGGCTATGGATGCTTCCCACGTCTCCCTCTGCTCCCTC
AACATGCGCTCCGGCGGCTTTGACCACTTCAGGTGCGATCGCTCAATCTC
CTTGGGTCTGAACTTAAGCAACCTCGGCAAGATCCTCAAGTGCGCAGGGA
ACGAGGACGTAGTTACGCTCAAGGCGGAAGACGAGCCCGATACATTGACC
CTCATGTTCGAAGCCCCCAACCAAGAGCGCATCTCCGACTTCGAGCTCAA
ACTGATGGACATTGAGACAGAGCACCTGGGCATTCCCAATGAGGAGTACA
AATGCACGATTTCCATGCCCTCCGTTGAGTTTCAACGCATTATTCGCGAC
TTGGCCGTGATTGGCGAGACGTGCATCATCAGCTGCACCAAGGAAGGAGT
CCGCTTCTCAGTCTCAGGGGACCTGGGCAAGGGGAATGTAACGGTGCGTC
AATCATCGGCGGTGGACGGCGACGAGAAGGATCAGGTGAAGATCCAGATG
GAGGAGCCTGTCACGCTGAACTTTGCTTTGCGATACTTAGGTTTCTTCAC
CAAGGCAACCCCCCTTGGCCCGACGGTGAAATTGCACATGTCCCCAGATG
TGCCCATCGTGGTGGAGTACCCGATGAAAGACATTGGTTCGATCTCTTAC
TTCTTGGCGCCCAAGATCGATGAAGATTAA
back to top
Synonyms
Publications