jgi.p|Nanoce1779_2|544781, mRNA_6574 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|544781
Unique NamemRNA_6574
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1613
Alignment locationscaffold_18:181202..182814 -

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Properties
Property NameValue
TranscriptId544867
TrackFilteredModels2
ProteinId544781
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:181202..182814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|544781gene_6574Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|544781mRNA_6574-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6574CDS_6574Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6574 ID=mRNA_6574|Name=jgi.p|Nanoce1779_2|544781|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp
ACAGACGTTACACTTTCCTCCCCCCTGCTTCTGTCCATGTCCTTGCGTGC
AGCAGCCACGCCTAAGCAAAGCTTTGACCGACAACGTGATCGCCTCTTGA
TTCGTGAAAATTTTGCAAAGGCCGTGGCTCAGGACACCCAAGCATTTCGC
AAGACTGAATGGGAAGTCCGGACCGATGCCCTGGCCGTCAGTCGGCACGA
GCAACGACAACGCCAGCAAGCAGCCGCTCAAGCGCTAGCGGCAGAAGCCA
AAGTCGCCCAGCTTCTTAAGGATCAACAGTGTCGTGAGACTGCTAAGAAG
AATGCACTCTCTCAGCAAGGAGAAGTGGGACGCACGACCAGCCGTCTCCG
GCCCAGGACCGACCCAGCGACGTTGAAAGCGCGTAAGGCAGCCCTCCAAG
AGCAGGCGTATGCACTCCAAGCTCGCAATGAGGCAGCACGTCGGGCATTG
GTGCAATCGTGTCTCGATCGACAGTGGCGTGATGGATGCGATAGTGCGCG
TTTGCTCGACAGTCAGGCCCTGCAGCGAGTCATGACCGAGGCTCAGCAGC
AACAGCTCATAGAGAAGCAAGTCCGCCAGGATCAAGTGGCTAAACATGAC
ACTGCTTTTCACGCCAATATCAGACGACATGTCGAAGAATTGGATGAGGC
GGAGAGCCACAAGCAAGCGTTGCAGGCGCAGCGAAAGCGGGAGACGGTGG
TGACGCTTGAAACGCAAATCGCCCTTGGACAGGCCGAGCAACAGAAAGCC
AAGGCCGCCCAGGCTGCGGAGGATGCCGAAGAGCTCGCACAGATTGCGGC
GGATTTAAAGCGAAACGAAGAACAAGCTACTGCGCGTCGAGACGCGGCTT
GGGCGAGAGGGCAAGACGTCAGGGAGTTCAACGATCGGCGGTTGGAGCAG
GTACGTGCACGGGCGGAGGAGGAGCGGCAGCGGGATTTGGCGTTGCTGGA
GCATGCAATGGCACTAGAAGCTAAGGAGGTGGCGCGGGAGAAGGCAAAAG
ATACCAGGGCCCATTTGGAAGCCAGGATTTACCGACAGTATTTGGAGGAA
GTAATGAAGAAGGAATCGGAGGACGAGCGGGCGGTGGATGCGGTGAGGCA
AGCAAAGGAGGATGAGGTGTGGGAGCAGCGCGAAGCCATGTTCCAGGCGC
GGAAAAAGAAACACGAGAGATTATGGCAGCAGGTAGATGCGGGACGACAG
GAGCAGTTGCGATACAAAGCCTTGGCAGGAGAGAGGGTGGCGGAGGAAGC
AGCGAGGGAGGTAGAAAAGTGGAAGCTGGAGCAGGCGGCTGGGATGGAAG
AGGAGCGACGAGCACAGGAAGCTCATCGAGCGGCCGTAAAAGAGAATCAG
GAGATGTTACAGCAGCAGGTGGAGTCGCGACAGCGACGGGAGCGGTGGGA
GCAGCAGCAGGAGTATTTAAGGACAAAGCATATGCAGAAGGAGGAAGCAG
CCCTAATGCAACGTCAGAAGAGCCAGGCTGGGATTGCACGGACGTATTTT
CCTCTGCGCTTGGAAAAGTGGATAGATTAGAAATTGAAAAGACACATGAC
GAGTTCTCTTCGATTTCTGACCCTTGAAGGAGGAAAAATCATGCCAAAGA
AATGTAAATCGAG
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protein sequence of jgi.p|Nanoce1779_2|544781

>mRNA_6574-protein ID=mRNA_6574-protein|Name=jgi.p|Nanoce1779_2|544781|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MSLRAAATPKQSFDRQRDRLLIRENFAKAVAQDTQAFRKTEWEVRTDALA
VSRHEQRQRQQAAAQALAAEAKVAQLLKDQQCRETAKKNALSQQGEVGRT
TSRLRPRTDPATLKARKAALQEQAYALQARNEAARRALVQSCLDRQWRDG
CDSARLLDSQALQRVMTEAQQQQLIEKQVRQDQVAKHDTAFHANIRRHVE
ELDEAESHKQALQAQRKRETVVTLETQIALGQAEQQKAKAAQAAEDAEEL
AQIAADLKRNEEQATARRDAAWARGQDVREFNDRRLEQVRARAEEERQRD
LALLEHAMALEAKEVAREKAKDTRAHLEARIYRQYLEEVMKKESEDERAV
DAVRQAKEDEVWEQREAMFQARKKKHERLWQQVDAGRQEQLRYKALAGER
VAEEAAREVEKWKLEQAAGMEEERRAQEAHRAAVKENQEMLQQQVESRQR
RERWEQQQEYLRTKHMQKEEAALMQRQKSQAGIARTYFPLRLEKWID*
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mRNA from alignment at scaffold_18:181202..182814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6574 ID=mRNA_6574|Name=jgi.p|Nanoce1779_2|544781|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp|location=Sequence derived from alignment at scaffold_18:181202..182814- (Nannochloropsis oceanica)
ACAGACGTTACACTTTCCTCCCCCCTGCTTCTGTCCATGTCCTTGCGTGC
AGCAGCCACGCCTAAGCAAAGCTTTGACCGACAACGTGATCGCCTCTTGA
TTCGTGAAAATTTTGCAAAGGCCGTGGCTCAGGACACCCAAGCATTTCGC
AAGACTGAATGGGAAGTCCGGACCGATGCCCTGGCCGTCAGTCGGCACGA
GCAACGACAACGCCAGCAAGCAGCCGCTCAAGCGCTAGCGGCAGAAGCCA
AAGTCGCCCAGCTTCTTAAGGATCAACAGTGTCGTGAGACTGCTAAGAAG
AATGCACTCTCTCAGCAAGGAGAAGTGGGACGCACGACCAGCCGTCTCCG
GCCCAGGACCGACCCAGCGACGTTGAAAGCGCGTAAGGCAGCCCTCCAAG
AGCAGGCGTATGCACTCCAAGCTCGCAATGAGGCAGCACGTCGGGCATTG
GTGCAATCGTGTCTCGATCGACAGTGGCGTGATGGATGCGATAGTGCGCG
TTTGCTCGACAGTCAGGCCCTGCAGCGAGTCATGACCGAGGCTCAGCAGC
AACAGCTCATAGAGAAGCAAGTCCGCCAGGATCAAGTGGCTAAACATGAC
ACTGCTTTTCACGCCAATATCAGACGACATGTCGAAGAATTGGATGAGGC
GGAGAGCCACAAGCAAGCGTTGCAGGCGCAGCGAAAGCGGGAGACGGTGG
TGACGCTTGAAACGCAAATCGCCCTTGGACAGGCCGAGCAACAGAAAGCC
AAGGCCGCCCAGGCTGCGGAGGATGCCGAAGAGCTCGCACAGATTGCGGC
GGATTTAAAGCGAAACGAAGAACAAGCTACTGCGCGTCGAGACGCGGCTT
GGGCGAGAGGGCAAGACGTCAGGGAGTTCAACGATCGGCGGTTGGAGCAG
GTACGTGCACGGGCGGAGGAGGAGCGGCAGCGGGATTTGGCGTTGCTGGA
GCATGCAATGGCACTAGAAGCTAAGGAGGTGGCGCGGGAGAAGGCAAAAG
ATACCAGGGCCCATTTGGAAGCCAGGATTTACCGACAGTATTTGGAGGAA
GTAATGAAGAAGGAATCGGAGGACGAGCGGGCGGTGGATGCGGTGAGGCA
AGCAAAGGAGGATGAGGTGTGGGAGCAGCGCGAAGCCATGTTCCAGGCGC
GGAAAAAGAAACACGAGAGATTATGGCAGCAGGTAGATGCGGGACGACAG
GAGCAGTTGCGATACAAAGCCTTGGCAGGAGAGAGGGTGGCGGAGGAAGC
AGCGAGGGAGGTAGAAAAGTGGAAGCTGGAGCAGGCGGCTGGGATGGAAG
AGGAGCGACGAGCACAGGAAGCTCATCGAGCGGCCGTAAAAGAGAATCAG
GAGATGTTACAGCAGCAGGTGGAGTCGCGACAGCGACGGGAGCGGTGGGA
GCAGCAGCAGGAGTATTTAAGGACAAAGCATATGCAGAAGGAGGAAGCAG
CCCTAATGCAACGTCAGAAGAGCCAGGCTGGGATTGCACGGACGTATTTT
CCTCTGCGCTTGGAAAAGTGGATAGATTAGAAATTGAAAAGACACATGAC
GAGTTCTCTTCGATTTCTGACCCTTGAAGGAGGAAAAATCATGCCAAAGA
AATGTAAATCGAG
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Coding sequence (CDS) from alignment at scaffold_18:181202..182814-

>mRNA_6574 ID=mRNA_6574|Name=jgi.p|Nanoce1779_2|544781|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_18:181202..182814- (Nannochloropsis oceanica)
ATGTCCTTGCGTGCAGCAGCCACGCCTAAGCAAAGCTTTGACCGACAACG
TGATCGCCTCTTGATTCGTGAAAATTTTGCAAAGGCCGTGGCTCAGGACA
CCCAAGCATTTCGCAAGACTGAATGGGAAGTCCGGACCGATGCCCTGGCC
GTCAGTCGGCACGAGCAACGACAACGCCAGCAAGCAGCCGCTCAAGCGCT
AGCGGCAGAAGCCAAAGTCGCCCAGCTTCTTAAGGATCAACAGTGTCGTG
AGACTGCTAAGAAGAATGCACTCTCTCAGCAAGGAGAAGTGGGACGCACG
ACCAGCCGTCTCCGGCCCAGGACCGACCCAGCGACGTTGAAAGCGCGTAA
GGCAGCCCTCCAAGAGCAGGCGTATGCACTCCAAGCTCGCAATGAGGCAG
CACGTCGGGCATTGGTGCAATCGTGTCTCGATCGACAGTGGCGTGATGGA
TGCGATAGTGCGCGTTTGCTCGACAGTCAGGCCCTGCAGCGAGTCATGAC
CGAGGCTCAGCAGCAACAGCTCATAGAGAAGCAAGTCCGCCAGGATCAAG
TGGCTAAACATGACACTGCTTTTCACGCCAATATCAGACGACATGTCGAA
GAATTGGATGAGGCGGAGAGCCACAAGCAAGCGTTGCAGGCGCAGCGAAA
GCGGGAGACGGTGGTGACGCTTGAAACGCAAATCGCCCTTGGACAGGCCG
AGCAACAGAAAGCCAAGGCCGCCCAGGCTGCGGAGGATGCCGAAGAGCTC
GCACAGATTGCGGCGGATTTAAAGCGAAACGAAGAACAAGCTACTGCGCG
TCGAGACGCGGCTTGGGCGAGAGGGCAAGACGTCAGGGAGTTCAACGATC
GGCGGTTGGAGCAGGTACGTGCACGGGCGGAGGAGGAGCGGCAGCGGGAT
TTGGCGTTGCTGGAGCATGCAATGGCACTAGAAGCTAAGGAGGTGGCGCG
GGAGAAGGCAAAAGATACCAGGGCCCATTTGGAAGCCAGGATTTACCGAC
AGTATTTGGAGGAAGTAATGAAGAAGGAATCGGAGGACGAGCGGGCGGTG
GATGCGGTGAGGCAAGCAAAGGAGGATGAGGTGTGGGAGCAGCGCGAAGC
CATGTTCCAGGCGCGGAAAAAGAAACACGAGAGATTATGGCAGCAGGTAG
ATGCGGGACGACAGGAGCAGTTGCGATACAAAGCCTTGGCAGGAGAGAGG
GTGGCGGAGGAAGCAGCGAGGGAGGTAGAAAAGTGGAAGCTGGAGCAGGC
GGCTGGGATGGAAGAGGAGCGACGAGCACAGGAAGCTCATCGAGCGGCCG
TAAAAGAGAATCAGGAGATGTTACAGCAGCAGGTGGAGTCGCGACAGCGA
CGGGAGCGGTGGGAGCAGCAGCAGGAGTATTTAAGGACAAAGCATATGCA
GAAGGAGGAAGCAGCCCTAATGCAACGTCAGAAGAGCCAGGCTGGGATTG
CACGGACGTATTTTCCTCTGCGCTTGGAAAAGTGGATAGATTAG
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Synonyms
Publications