jgi.p|Nanoce1779_2|651539, mRNA_6572 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|651539
Unique NamemRNA_6572
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2084
Alignment locationscaffold_18:176568..178651 -

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Properties
Property NameValue
TranscriptId651625
TrackFilteredModels2
ProteinId651539
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:176568..178651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651539gene_6572Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651539mRNA_6572-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6572CDS_6572Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6572 ID=mRNA_6572|Name=jgi.p|Nanoce1779_2|651539|organism=Nannochloropsis oceanica|type=mRNA|length=2084bp
CCCTCCCGGGAAGCTTTTTATGGCGCGGGCCGAAGTAAGCTCACAGTACT
CAACAGAGCATCACTCCCTCATACGCACGCCCAGGTCTCATACTCTTGAG
CCATCTCGGGGCTTGTACCGACCTCACACATGCCCATATTTATGTAATAA
ATCGCGGGAGAGGACCGCATCGTCATCGACCTCCTCCCATGCGCGCCCTT
GGATAGTGAGACCAAACCACCGCGCTCCCAAGTTCACAAACATGTACCAC
CTTCCCCAACACAGGCCTAAGACCACGCACAAGATTCAGTGCGAAACTTG
GAGCCTTTTTCATCCTTTCTTTATCCAGCAATGCGTCCATCACTTTATCC
ACGACTCCTGCTTTTCCTTGCCGTCGCCGTCCACACGACAACCGCCTTCC
ACCCTCCACCAAAACTCCGCCAGATTTCAAGAAATCCTTCGATCCTCCTC
TCTGCTTCCTCCCCCAACTCCATCCATGATCTAGTCGAGAGTTTCCGCCG
AGGCCAAGCGAGCGTCACCGGCGTAACCAAGGAAACCTTGCAGCGGATCG
AGCAACAAGACGGGGCAGTAGGGGCCTTTCTCGCCTTGAGTGGAGATCAC
GCCCTCGCGCAAGCGAAAATACTCGACACTAAACTTGCCATGAAGGATAC
AGCTACCGCGGTATTGCCCTTATTAGGCCTACCCTTGGCAGTCAAGGATA
ACATCTGTACCGCGGGCGTTCCCACTACTGCAGCCTCCCGTGTCTTGCAA
GGCTACATCCCATCCTACGACGCTACAGCCGTCGTCCGCCTCAAGGCCGC
CGGCTGCATATTGATTGGAAAGACAAACATGGACGAGTTCGGAATGGGCT
CCACGACGGAATCCTCTGGTTATCACGTCACGCGCAACCCTCGCGACCTC
ACCCGTTCTCCCGGTGGTTCCTCTGGAGGCTCGGCCGCAGCGGTGGCAAG
TGGCATGGTGCTCGCCGCACTAGGCACGGACACAGGGGGGTCGATTCGAC
AGCCCGCATCGTGGACGGGGACGGTAGGATTGAAGCCTACGTATGGGAGA
GTGTCAAGGTACGGGTTGATGGCGTATGGGTCGAGTACGGATGTGATAGG
TCCCTTGACACAAAATGTAATGGATGCTGCTCGAGTGCTTGCCGTGCTTG
CAGGTGAGGATCATGCGCACGATACTACCACGAGTCAAGCGCCTGAGTTG
CAGGATTTTGTGGGGGCTGTGCGGGAGATGGAGGGGAAGGGAAGTAAGCC
ATTAGCTGGGGTGAAGGTGGCATTGGTGAAGGAAACACTGCACAGTAGGG
TGGAGGAGGGAGTGGCATCGGCGGTACGAAAGGCGGTGAATCTGCTGGAG
CGATTGGGAGCGACAGTGATGGAGGTGTCGATTCCTTATTTAGACGCGCA
TTGTGCTTCCTACTATGTGAATGTGTTGTCGGAGGCCAGTGCGAATCTGG
CGCGGTACGACGGGGTGCGGTATGGGTTGAGGCCAAAGGGGGCAGAGAGC
GCCAAGACGGTCATGTTGGGGAGTAGAGGAAGCGGATTTGGGGAGGAGGT
AAAGCAGAGAATATTGCTGGGGACGTTCTCGTTGAGCGCCGGTTATTCAG
ACGCGTACTATTTGAAGAGCCAGCAGTTGCGGTCGGTTTTGTCGCAGTCA
TTCAGCGAGAGTTTTGGGGTGGCGGATGTGTTGGTGTGTCCGACATCGCC
GACAGTGGCGTATCCATTGGGGAAGGCGGCCGAAAGTAAGGTTGATATGT
ATGCAGACGATTTGTTCACGGTCCCTGCCAGCCTGGCGGGACTGCCGGCA
ATCAGCTTACCTATCACGGGAGGGAGGGAGGGGGAGTCGTCGCTTCCGGT
GGGATTGCAAATTATCGGGCAGCGATTTGCTGAAGCACAAATTTTGCAGG
TGGCAAAGGCACTAGAACTGGCGCAAGGGAGCTAGGGAGGAATGTCGTGC
TGGGTGGGATACACGGAAGGGTCAGGGAGAAGGGTAGGGTGAGCTCTGCA
CTCTCGGGCTTTACCGCAAGCATGCATTTTTGGAGAATGCCAATGGAAAT
TCCAAAGCACAAATATTACAACACTTCTGACTTA
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protein sequence of jgi.p|Nanoce1779_2|651539

>mRNA_6572-protein ID=mRNA_6572-protein|Name=jgi.p|Nanoce1779_2|651539|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MRPSLYPRLLLFLAVAVHTTTAFHPPPKLRQISRNPSILLSASSPNSIHD
LVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDT
KLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATA
VVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGG
SAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYG
SSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQAPELQDFVGAVREM
EGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVS
IPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRG
SGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADV
LVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGRE
GESSLPVGLQIIGQRFAEAQILQVAKALELAQGS*
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mRNA from alignment at scaffold_18:176568..178651-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6572 ID=mRNA_6572|Name=jgi.p|Nanoce1779_2|651539|organism=Nannochloropsis oceanica|type=mRNA|length=2084bp|location=Sequence derived from alignment at scaffold_18:176568..178651- (Nannochloropsis oceanica)
CCCTCCCGGGAAGCTTTTTATGGCGCGGGCCGAAGTAAGCTCACAGTACT
CAACAGAGCATCACTCCCTCATACGCACGCCCAGGTCTCATACTCTTGAG
CCATCTCGGGGCTTGTACCGACCTCACACATGCCCATATTTATGTAATAA
ATCGCGGGAGAGGACCGCATCGTCATCGACCTCCTCCCATGCGCGCCCTT
GGATAGTGAGACCAAACCACCGCGCTCCCAAGTTCACAAACATGTACCAC
CTTCCCCAACACAGGCCTAAGACCACGCACAAGATTCAGTGCGAAACTTG
GAGCCTTTTTCATCCTTTCTTTATCCAGCAATGCGTCCATCACTTTATCC
ACGACTCCTGCTTTTCCTTGCCGTCGCCGTCCACACGACAACCGCCTTCC
ACCCTCCACCAAAACTCCGCCAGATTTCAAGAAATCCTTCGATCCTCCTC
TCTGCTTCCTCCCCCAACTCCATCCATGATCTAGTCGAGAGTTTCCGCCG
AGGCCAAGCGAGCGTCACCGGCGTAACCAAGGAAACCTTGCAGCGGATCG
AGCAACAAGACGGGGCAGTAGGGGCCTTTCTCGCCTTGAGTGGAGATCAC
GCCCTCGCGCAAGCGAAAATACTCGACACTAAACTTGCCATGAAGGATAC
AGCTACCGCGGTATTGCCCTTATTAGGCCTACCCTTGGCAGTCAAGGATA
ACATCTGTACCGCGGGCGTTCCCACTACTGCAGCCTCCCGTGTCTTGCAA
GGCTACATCCCATCCTACGACGCTACAGCCGTCGTCCGCCTCAAGGCCGC
CGGCTGCATATTGATTGGAAAGACAAACATGGACGAGTTCGGAATGGGCT
CCACGACGGAATCCTCTGGTTATCACGTCACGCGCAACCCTCGCGACCTC
ACCCGTTCTCCCGGTGGTTCCTCTGGAGGCTCGGCCGCAGCGGTGGCAAG
TGGCATGGTGCTCGCCGCACTAGGCACGGACACAGGGGGGTCGATTCGAC
AGCCCGCATCGTGGACGGGGACGGTAGGATTGAAGCCTACGTATGGGAGA
GTGTCAAGGTACGGGTTGATGGCGTATGGGTCGAGTACGGATGTGATAGG
TCCCTTGACACAAAATGTAATGGATGCTGCTCGAGTGCTTGCCGTGCTTG
CAGGTGAGGATCATGCGCACGATACTACCACGAGTCAAGCGCCTGAGTTG
CAGGATTTTGTGGGGGCTGTGCGGGAGATGGAGGGGAAGGGAAGTAAGCC
ATTAGCTGGGGTGAAGGTGGCATTGGTGAAGGAAACACTGCACAGTAGGG
TGGAGGAGGGAGTGGCATCGGCGGTACGAAAGGCGGTGAATCTGCTGGAG
CGATTGGGAGCGACAGTGATGGAGGTGTCGATTCCTTATTTAGACGCGCA
TTGTGCTTCCTACTATGTGAATGTGTTGTCGGAGGCCAGTGCGAATCTGG
CGCGGTACGACGGGGTGCGGTATGGGTTGAGGCCAAAGGGGGCAGAGAGC
GCCAAGACGGTCATGTTGGGGAGTAGAGGAAGCGGATTTGGGGAGGAGGT
AAAGCAGAGAATATTGCTGGGGACGTTCTCGTTGAGCGCCGGTTATTCAG
ACGCGTACTATTTGAAGAGCCAGCAGTTGCGGTCGGTTTTGTCGCAGTCA
TTCAGCGAGAGTTTTGGGGTGGCGGATGTGTTGGTGTGTCCGACATCGCC
GACAGTGGCGTATCCATTGGGGAAGGCGGCCGAAAGTAAGGTTGATATGT
ATGCAGACGATTTGTTCACGGTCCCTGCCAGCCTGGCGGGACTGCCGGCA
ATCAGCTTACCTATCACGGGAGGGAGGGAGGGGGAGTCGTCGCTTCCGGT
GGGATTGCAAATTATCGGGCAGCGATTTGCTGAAGCACAAATTTTGCAGG
TGGCAAAGGCACTAGAACTGGCGCAAGGGAGCTAGGGAGGAATGTCGTGC
TGGGTGGGATACACGGAAGGGTCAGGGAGAAGGGTAGGGTGAGCTCTGCA
CTCTCGGGCTTTACCGCAAGCATGCATTTTTGGAGAATGCCAATGGAAAT
TCCAAAGCACAAATATTACAACACTTCTGACTTA
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Coding sequence (CDS) from alignment at scaffold_18:176568..178651-

>mRNA_6572 ID=mRNA_6572|Name=jgi.p|Nanoce1779_2|651539|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at scaffold_18:176568..178651- (Nannochloropsis oceanica)
ATGCGTCCATCACTTTATCCACGACTCCTGCTTTTCCTTGCCGTCGCCGT
CCACACGACAACCGCCTTCCACCCTCCACCAAAACTCCGCCAGATTTCAA
GAAATCCTTCGATCCTCCTCTCTGCTTCCTCCCCCAACTCCATCCATGAT
CTAGTCGAGAGTTTCCGCCGAGGCCAAGCGAGCGTCACCGGCGTAACCAA
GGAAACCTTGCAGCGGATCGAGCAACAAGACGGGGCAGTAGGGGCCTTTC
TCGCCTTGAGTGGAGATCACGCCCTCGCGCAAGCGAAAATACTCGACACT
AAACTTGCCATGAAGGATACAGCTACCGCGGTATTGCCCTTATTAGGCCT
ACCCTTGGCAGTCAAGGATAACATCTGTACCGCGGGCGTTCCCACTACTG
CAGCCTCCCGTGTCTTGCAAGGCTACATCCCATCCTACGACGCTACAGCC
GTCGTCCGCCTCAAGGCCGCCGGCTGCATATTGATTGGAAAGACAAACAT
GGACGAGTTCGGAATGGGCTCCACGACGGAATCCTCTGGTTATCACGTCA
CGCGCAACCCTCGCGACCTCACCCGTTCTCCCGGTGGTTCCTCTGGAGGC
TCGGCCGCAGCGGTGGCAAGTGGCATGGTGCTCGCCGCACTAGGCACGGA
CACAGGGGGGTCGATTCGACAGCCCGCATCGTGGACGGGGACGGTAGGAT
TGAAGCCTACGTATGGGAGAGTGTCAAGGTACGGGTTGATGGCGTATGGG
TCGAGTACGGATGTGATAGGTCCCTTGACACAAAATGTAATGGATGCTGC
TCGAGTGCTTGCCGTGCTTGCAGGTGAGGATCATGCGCACGATACTACCA
CGAGTCAAGCGCCTGAGTTGCAGGATTTTGTGGGGGCTGTGCGGGAGATG
GAGGGGAAGGGAAGTAAGCCATTAGCTGGGGTGAAGGTGGCATTGGTGAA
GGAAACACTGCACAGTAGGGTGGAGGAGGGAGTGGCATCGGCGGTACGAA
AGGCGGTGAATCTGCTGGAGCGATTGGGAGCGACAGTGATGGAGGTGTCG
ATTCCTTATTTAGACGCGCATTGTGCTTCCTACTATGTGAATGTGTTGTC
GGAGGCCAGTGCGAATCTGGCGCGGTACGACGGGGTGCGGTATGGGTTGA
GGCCAAAGGGGGCAGAGAGCGCCAAGACGGTCATGTTGGGGAGTAGAGGA
AGCGGATTTGGGGAGGAGGTAAAGCAGAGAATATTGCTGGGGACGTTCTC
GTTGAGCGCCGGTTATTCAGACGCGTACTATTTGAAGAGCCAGCAGTTGC
GGTCGGTTTTGTCGCAGTCATTCAGCGAGAGTTTTGGGGTGGCGGATGTG
TTGGTGTGTCCGACATCGCCGACAGTGGCGTATCCATTGGGGAAGGCGGC
CGAAAGTAAGGTTGATATGTATGCAGACGATTTGTTCACGGTCCCTGCCA
GCCTGGCGGGACTGCCGGCAATCAGCTTACCTATCACGGGAGGGAGGGAG
GGGGAGTCGTCGCTTCCGGTGGGATTGCAAATTATCGGGCAGCGATTTGC
TGAAGCACAAATTTTGCAGGTGGCAAAGGCACTAGAACTGGCGCAAGGGA
GCTAG
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Synonyms
Publications