jgi.p|Nanoce1779_2|632002, mRNA_6571 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632002
Unique NamemRNA_6571
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length791
Alignment locationscaffold_18:175120..176138 -

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Properties
Property NameValue
TranscriptId632088
TrackFilteredModels2
ProteinId632002
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:175120..176138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632002gene_6571Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632002mRNA_6571-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6571CDS_6571Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6571 ID=mRNA_6571|Name=jgi.p|Nanoce1779_2|632002|organism=Nannochloropsis oceanica|type=mRNA|length=791bp
ACAGCGGCATTGCTACGTGACACGGGCCAGTGGGAAGCCCGACGCTATTG
CTAGCTTCTGCGCAAGTAACACACTCGCATCATCGTGCCGTCAATCACGC
ACCGAGGTTGACCTCTCTATAACTGGGACGGGCACAAAGAGACGTGGCAC
CAGCTGGTTGCGTTGAGGAAGGATGGAAGGTGGTGGGGGCTGCCTGGAGG
GGCTGTTGGAAAGGCAGCAACCAGAAGGACATCACCGGGAACGGAGGAGG
CCTCCAGCCGAGGCCCACGCACATGGAAACCCACACGCCCCACCGATGGC
ACGACAAGATTTAATCAACCTTAAAATGGCAGTGTTTGAAAGACTTTCGC
ATGGCCACATGCAACGGAGCAACAGTGCCGGTAGCAGTGGGAGTGCGAGG
CTGCCACACCCGCCGTTATGTCGGCTGTGGGCCTTGTATCGCAAGTCCCT
CCGCCTGTTCTTGATTGGGGAGCTGACCAAGCCGGAGTTGGATGCAGTGG
TAATATATACGCTAGGCGACGAAAATGTACAAGTGCACAACGCTCTAGTC
CGAGGTCTAGTCCATAACGTCATGGCCTCAAGCCTGCCCTCCCATCCTGA
AGGAATAGCAGCAACGACAATGAGCAGAGTTCGAGGCCTGGGGTTTGAGG
GCGATGCCAATGATGGGGTCTTATTGAAAGGTCGGATGGAAGGAGAGGGG
AGCGCTGGTTCTCCGAATAACAGCAGCAGCAGCGGCAGCGGCAGCGGTCA
AAAACGAATACGACTAAAAGAACAGACAAAAGAAGAAGAGG
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protein sequence of jgi.p|Nanoce1779_2|632002

>mRNA_6571-protein ID=mRNA_6571-protein|Name=jgi.p|Nanoce1779_2|632002|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MEGGGGCLEGLLERQQPEGHHRERRRPPAEAHAHGNPHAPPMARQDLINL
KMAVFERLSHGHMQRSNSAGSSGSARLPHPPLCRLWALYRKSLRLFLIGE
LTKPELDAVVIYTLGDENVQVHNALVRGLVHNVMASSLPSHPEGIAATTM
SRVRGLGFEGDANDGVLLKGRMEGEGSAGSPNNSSSSGSGSGQKRIRLKE
QTKEEE
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mRNA from alignment at scaffold_18:175120..176138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6571 ID=mRNA_6571|Name=jgi.p|Nanoce1779_2|632002|organism=Nannochloropsis oceanica|type=mRNA|length=1019bp|location=Sequence derived from alignment at scaffold_18:175120..176138- (Nannochloropsis oceanica)
ACAGCGGCATTGCTACGTGACACGGGCCAGTGGGAAGCCCGACGCTATTG
CTAGCTTCTGCGCAAGTAACACACTCGCATCATCGTGCCGTCAATCACGC
ACCGAGGTTGACCTCTCTATAACTGGGACGGGCACAAAGAGACGTGGCAC
CAGCTGGTTGCGTTGAGGAAGGATGGAAGGTGGTGGGGGCTGCCTGGAGG
GGCTGTTGGAAAGGCAGCAACCAGAAGGACATCACCGGGAACGGAGGAGG
CCTCCAGCCGAGGCCCACGCACATGGAAACCCACACGCCCCACCGATGGC
ACGACAAGATTTAATCAACCTTAAAATGGCAGTGTTTGAAAGACTTTCGC
ATGGCCACATGCAACGGAGCAACAGTGCCGGTAGCAGTGGGAGTGCGAGG
CTGCCACACCCGCCGTTATGTCGGCTGTGGGCCTTGTATCGCAAGTCCCT
CCGCCTGTTCTTGATTGGGGAGCTGACCAAGCCGGAGTTGGATGCAGTGG
TAATATATACGCTAGGCGACGAAAATGGTACGTGCGGAATGGGTTGACGG
ATGGGAGAGTGGAGCTTTGAGTAAGACTTTGGGACAAAAAAAAATGGTCT
CACCGAGCATGTGGCAGCCTGCATCACCATTTTCTATCAGCATACGAGCA
TATGAATATTTTGCACTGCAATTCGAAGGCACCTCATCAATTTCGGAATT
AAATCTGATTTATATCTGCGTTCTATCCTCCACATTTACTTTCACATTCA
TGCAGTACAAGTGCACAACGCTCTAGTCCGAGGTCTAGTCCATAACGTCA
TGGCCTCAAGCCTGCCCTCCCATCCTGAAGGAATAGCAGCAACGACAATG
AGCAGAGTTCGAGGCCTGGGGTTTGAGGGCGATGCCAATGATGGGGTCTT
ATTGAAAGGTCGGATGGAAGGAGAGGGGAGCGCTGGTTCTCCGAATAACA
GCAGCAGCAGCGGCAGCGGCAGCGGTCAAAAACGAATACGACTAAAAGAA
CAGACAAAAGAAGAAGAGG
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Coding sequence (CDS) from alignment at scaffold_18:175120..176138-

>mRNA_6571 ID=mRNA_6571|Name=jgi.p|Nanoce1779_2|632002|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_18:175120..176138- (Nannochloropsis oceanica)
TACAAGTGCACAACGCTCTAGTCCGAGGTCTAGTCCATAACGTCATGGCC
TCAAGCCTGCCCTCCCATCCTGAAGGAATAGCAGCAACGACAATGAGCAG
AGTTCGAGGCCTGGGGTTTGAGGGCGATGCCAATGATGGGGTCTTATTGA
AAGGTCGGATGGAAGGAGAGGGGAGCGCTGGTTCTCCGAATAACAGCAGC
AGCAGCGGCAGCGGCAGCGGTCAAAAACGAATACGACTAAAAGAACAGAC
AAAAGAAGAAGAGATGGAAGGTGGTGGGGGCTGCCTGGAGGGGCTGTTGG
AAAGGCAGCAACCAGAAGGACATCACCGGGAACGGAGGAGGCCTCCAGCC
GAGGCCCACGCACATGGAAACCCACACGCCCCACCGATGGCACGACAAGA
TTTAATCAACCTTAAAATGGCAGTGTTTGAAAGACTTTCGCATGGCCACA
TGCAACGGAGCAACAGTGCCGGTAGCAGTGGGAGTGCGAGGCTGCCACAC
CCGCCGTTATGTCGGCTGTGGGCCTTGTATCGCAAGTCCCTCCGCCTGTT
CTTGATTGGGGAGCTGACCAAGCCGGAGTTGGATGCAGTGGTAATATATA
CGCTAGGCGACGAAAATGTACAAGTGCACAACGCTCTAGTCCGAGGTCTA
GTCCATAACGTCATGGCCTCAAGCCTGCCCTCCCATCCTGAAGGAATAGC
AGCAACGACAATGAGCAGAGTTCGAGGCCTGGGGTTTGAGGGCGATGCCA
ATGATGGGGTCTTATTGAAAGGTCGGATGGAAGGAGAGGGGAGCGCTGGT
TCTCCGAATAACAGCAGCAGCAGCGGCAGCGGCAGCGGTCAAAAACGAAT
ACGACTAAAAGAACAGACAAAAGAAGAAGAGATGGAAGGTGGTGGGGGCT
GCCTGGAGGGGCTGTTGGAAAGGCAGCAACCAGAAGGACATCACCGGGAA
CGGAGGAGGCCTCCAGCCGAGGCCCACGCACATGGAAACCCACACGCCCC
ACCGATGGCACGACAAGATTTAATCAACCTTAAAATGGCAGTGTTTGAAA
GACTTTCGCATGGCCACATGCAACGGAGCAACAGTGCCGGTAGCAGTGGG
AGTGCGAGGCTGCCACACCCGCCGTTATGTCGGCTGTGGGCCTTGTATCG
CAAGTCCCTCCGCCTGTTCTTGATTGGGGAGCTGACCAAGCCGGAGTTGG
ATGCAGTGGTAATATATACGCTAGGCGACGAAAATG
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Synonyms
Publications