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Properties
| Property Name | Value |
|---|
| TranscriptId | 597458 |
| Track | FilteredModels2 |
| ProteinId | 597372 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:172481..174014 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6570 ID=mRNA_6570|Name=jgi.p|Nanoce1779_2|597372|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp
GGAAGAGTCGGAGAAGGCATTAGTGAGTGCTTCAGCAACAGGAGCAGTGG
TAGCTCCATCTGCACCAGCACCAACAGCACCAGCAGAGCCAGCAGCACCA
GCAACATCGGCATCATCATCGTCCCAACCACGCGCCCCTCCAGTGGCGGT
GGTGGCAGCTGCTGCTGATGAGGCACCAAAAAAAGAGGGATATGGGACAC
ATGCGATTGACGTTGTCATACTTACCCCTTCCTCTTCACCTCCTATTATT
TCTGCTGCAGCTACTTCTCCTTCCTCAGAGCGACCTGCCTCTCCTTCTTC
TACATTCAAGAGCGCAGCACCCACAGGCAGACTCTCGCCTCCCCCACCTC
CACCACCGCCTTCCTCCGCTCCTTCCTTGCAGCAGCAGCAGCAGCAACAA
GAGCAGCAGCATCAGTGGCAACCCATGCCCACACTCAAGCACGAAGATAA
ATGTGAGGAGCCACCTGTGGTGACCGAAGCCTCCTACCTTCCCGAGGCAT
GCATGCCCCACCCCCTAATCATCCACTTCCTCCTACGCACTGCCGGTGCC
ACCGACTCCGAGCTTGGGTCACGTCTTGCTCATTCAGCAGTAGCAGCAGC
AGCGGGAAGAGGTGGTGGAGGGGAAAGGGCAAGCCCCTCCCCGACGAAGC
GTGCAAGGAAGAATCATGCATATACAAGGCATTTGGCCGTGTCAGTGGAA
GCGATGGAAGGCCTAGATGAAGGTGCGGAGCTGTTTGTGAAACGCTTGCT
GGCCCGGTGTGTTCATGTGTCCAAGAGGCAACAAGAGGGAGGCAGTACCG
TTGTCATTCCTCCTTTTCCCATGCCTCGGCTTGGGACTGAGGGAGGTATT
GGTGCAAAAGTAGGAGCAGTAGGAGCAGCAGAAGCAGCAGCAGTGCCTGT
GAGAGGAGAGGCATTAGGGCAAATTGAGTCGTCTCAGTCTGGTGCCGCCA
TTTTGGAGATACAGATGGTGAGAACCGATGAAGAAGACGTGCCGAATACA
ACGACTGCAGTGGCGGCGGGGCAGGATGGCTGCAGCAACAGAAAGGAAGA
TGGCGATGCGGGTGCTGGATCACGTGCAGAGGAGACGGCGAAGAAAAAGA
ATGGTGGCGCGGTAATGATTGATGCAGCAATGCTGTTCAAAGCTTTGCGT
GTGCCCAGCACGGATGACCGGGACCCGCTGGGACGTTTGTTCCCACCGGA
CGGACTACTGGAAGAGCTAGTGGCCTCGTCTGGTATCTAGGGAGGAAAAT
AAGCGTGGGAAAAGGAAGGATGCGATGGGAAGAAAGGGGATAATAAGGAG
AGAAAAGAGGTTGTCTTACCGACCAGGATGAAGCGAAAGCGTGTGAATTA
CCAAAGAATCGACTTTGGATGTAAACAGTGCACAAACCCGCGTTTGTACA
ATAAGATCAGAAAAGGAAAGGGGTCGAGGAAAAGGTGTTTGTCGGTCTGT
GTGCGTAAGAACCAAGACCAGCACACGCACTGACAAGGAGCGGTGCGATC
CCAAAATGAATAACAAAAGACTTTGTCACGATAA back to topprotein sequence of jgi.p|Nanoce1779_2|597372 >mRNA_6570-protein ID=mRNA_6570-protein|Name=jgi.p|Nanoce1779_2|597372|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MPTLKHEDKCEEPPVVTEASYLPEACMPHPLIIHFLLRTAGATDSELGSR
LAHSAVAAAAGRGGGGERASPSPTKRARKNHAYTRHLAVSVEAMEGLDEG
AELFVKRLLARCVHVSKRQQEGGSTVVIPPFPMPRLGTEGGIGAKVGAVG
AAEAAAVPVRGEALGQIESSQSGAAILEIQMVRTDEEDVPNTTTAVAAGQ
DGCSNRKEDGDAGAGSRAEETAKKKNGGAVMIDAAMLFKALRVPSTDDRD
PLGRLFPPDGLLEELVASSGI* back to topmRNA from alignment at scaffold_18:172481..174014- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6570 ID=mRNA_6570|Name=jgi.p|Nanoce1779_2|597372|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at scaffold_18:172481..174014- (Nannochloropsis oceanica)
GGAAGAGTCGGAGAAGGCATTAGTGAGTGCTTCAGCAACAGGAGCAGTGG
TAGCTCCATCTGCACCAGCACCAACAGCACCAGCAGAGCCAGCAGCACCA
GCAACATCGGCATCATCATCGTCCCAACCACGCGCCCCTCCAGTGGCGGT
GGTGGCAGCTGCTGCTGATGAGGCACCAAAAAAAGAGGGATATGGGACAC
ATGCGATTGACGTTGTCATACTTACCCCTTCCTCTTCACCTCCTATTATT
TCTGCTGCAGCTACTTCTCCTTCCTCAGAGCGACCTGCCTCTCCTTCTTC
TACATTCAAGAGCGCAGCACCCACAGGCAGACTCTCGCCTCCCCCACCTC
CACCACCGCCTTCCTCCGCTCCTTCCTTGCAGCAGCAGCAGCAGCAACAA
GAGCAGCAGCATCAGTGGCAACCCATGCCCACACTCAAGCACGAAGATAA
ATGTGAGGAGCCACCTGTGGTGACCGAAGCCTCCTACCTTCCCGAGGCAT
GCATGCCCCACCCCCTAATCATCCACTTCCTCCTACGCACTGCCGGTGCC
ACCGACTCCGAGCTTGGGTCACGTCTTGCTCATTCAGCAGTAGCAGCAGC
AGCGGGAAGAGGTGGTGGAGGGGAAAGGGCAAGCCCCTCCCCGACGAAGC
GTGCAAGGAAGAATCATGCATATACAAGGCATTTGGCCGTGTCAGTGGAA
GCGATGGAAGGCCTAGATGAAGGTGCGGAGCTGTTTGTGAAACGCTTGCT
GGCCCGGTGTGTTCATGTGTCCAAGAGGCAACAAGAGGGAGGCAGTACCG
TTGTCATTCCTCCTTTTCCCATGCCTCGGCTTGGGACTGAGGGAGGTATT
GGTGCAAAAGTAGGAGCAGTAGGAGCAGCAGAAGCAGCAGCAGTGCCTGT
GAGAGGAGAGGCATTAGGGCAAATTGAGTCGTCTCAGTCTGGTGCCGCCA
TTTTGGAGATACAGATGGTGAGAACCGATGAAGAAGACGTGCCGAATACA
ACGACTGCAGTGGCGGCGGGGCAGGATGGCTGCAGCAACAGAAAGGAAGA
TGGCGATGCGGGTGCTGGATCACGTGCAGAGGAGACGGCGAAGAAAAAGA
ATGGTGGCGCGGTAATGATTGATGCAGCAATGCTGTTCAAAGCTTTGCGT
GTGCCCAGCACGGATGACCGGGACCCGCTGGGACGTTTGTTCCCACCGGA
CGGACTACTGGAAGAGCTAGTGGCCTCGTCTGGTATCTAGGGAGGAAAAT
AAGCGTGGGAAAAGGAAGGATGCGATGGGAAGAAAGGGGATAATAAGGAG
AGAAAAGAGGTTGTCTTACCGACCAGGATGAAGCGAAAGCGTGTGAATTA
CCAAAGAATCGACTTTGGATGTAAACAGTGCACAAACCCGCGTTTGTACA
ATAAGATCAGAAAAGGAAAGGGGTCGAGGAAAAGGTGTTTGTCGGTCTGT
GTGCGTAAGAACCAAGACCAGCACACGCACTGACAAGGAGCGGTGCGATC
CCAAAATGAATAACAAAAGACTTTGTCACGATAA back to topCoding sequence (CDS) from alignment at scaffold_18:172481..174014- >mRNA_6570 ID=mRNA_6570|Name=jgi.p|Nanoce1779_2|597372|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_18:172481..174014- (Nannochloropsis oceanica)
ATGCCCACACTCAAGCACGAAGATAAATGTGAGGAGCCACCTGTGGTGAC
CGAAGCCTCCTACCTTCCCGAGGCATGCATGCCCCACCCCCTAATCATCC
ACTTCCTCCTACGCACTGCCGGTGCCACCGACTCCGAGCTTGGGTCACGT
CTTGCTCATTCAGCAGTAGCAGCAGCAGCGGGAAGAGGTGGTGGAGGGGA
AAGGGCAAGCCCCTCCCCGACGAAGCGTGCAAGGAAGAATCATGCATATA
CAAGGCATTTGGCCGTGTCAGTGGAAGCGATGGAAGGCCTAGATGAAGGT
GCGGAGCTGTTTGTGAAACGCTTGCTGGCCCGGTGTGTTCATGTGTCCAA
GAGGCAACAAGAGGGAGGCAGTACCGTTGTCATTCCTCCTTTTCCCATGC
CTCGGCTTGGGACTGAGGGAGGTATTGGTGCAAAAGTAGGAGCAGTAGGA
GCAGCAGAAGCAGCAGCAGTGCCTGTGAGAGGAGAGGCATTAGGGCAAAT
TGAGTCGTCTCAGTCTGGTGCCGCCATTTTGGAGATACAGATGGTGAGAA
CCGATGAAGAAGACGTGCCGAATACAACGACTGCAGTGGCGGCGGGGCAG
GATGGCTGCAGCAACAGAAAGGAAGATGGCGATGCGGGTGCTGGATCACG
TGCAGAGGAGACGGCGAAGAAAAAGAATGGTGGCGCGGTAATGATTGATG
CAGCAATGCTGTTCAAAGCTTTGCGTGTGCCCAGCACGGATGACCGGGAC
CCGCTGGGACGTTTGTTCCCACCGGACGGACTACTGGAAGAGCTAGTGGC
CTCGTCTGGTATCTAG back to top
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