jgi.p|Nanoce1779_2|573679, mRNA_657 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573679
Unique NamemRNA_657
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1186
Alignment locationscaffold_2:121526..123160 +

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Properties
Property NameValue
TranscriptId573765
TrackFilteredModels2
ProteinId573679
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:121526..123160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573679gene_657Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573679mRNA_657-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_657CDS_657Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_657 ID=mRNA_657|Name=jgi.p|Nanoce1779_2|573679|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp
AGACACAGGCCATAAGTTTCTCGCTTCGACCTCCCCATCCCACCCCAGCG
CAGCCCATCTCCATCGTTCCCAACACAGCAACATTCTACCCACAAATAAT
GCGGCCCCTTGCAGAAGAGGAGACCAAGAAGGTCTTTGAGCGCCTGGCCA
AGTACGTCGGCGGAAACCTTGAGCAGCTCGTCAACCGTCCTGACGAACGG
TATTGCTTCCGCTACATGGATCAACGCGTGTATTACGTGAGTGAACGCTT
GATGAAGACCGCCACGAATTTCGGAAGGGACAATCTCCTATCTCTGGGCA
CGTGCGTCGGGCGATTCACCAAGACCGAGAAATTTCATATCAGCATCACC
TTCCTGGACTACTTGGCCCAGTACGCCAGCTATAAAGTCTGGGTCAAGCC
GCAAAGTGAGATGGGTTTCCTCTACGGCAACAACATAGTCAAATCGGGCC
TAGGGCGCATGACGGAGGCAATCCCGCAATATGCCGGGGTGGTTGTTTTT
TCCATGACCGATATTCCCTTGGGGTTTGGAGTGGCGGCCCAACCAACGGA
AGTTTGCAAGGATCTGGACCCCGGGGCAAATGTTGTGTTGCACCAGGGAG
ATGTGGGTGAGTATTTGAGGGTGGAGGATGAGCTGTCCTGAGGAGGGGGA
GGGAGGATGGGAGGATGGGTAGGAGGGAGGTTGTAGAAAGGGAGATGAGA
GAGCGAGGGAGAGATGGGGTAAAGTGAGAAGAGAGAAGGAAAGAAGGAAA
TCATGTACAGTTATTTACATGGGAGGAGGATGGTTGTGCGATTCGCGTTA
TATTTCTCTCCGCTGTCTCTGAGTACGTTGTCTTTGTCTTTTTCCGGCTT
GTGGCGTTTAGATAGATGTACGGAGGGTGAACCGTGTTCCGCCGTCTCAC
TTACTCACAGGAAAACACAGTCATATTTTTTAGCGAGAAGTCCAGCCCCA
TTCCTTCCTAATGAGGATTTTTTTCTTGGTCTTGCTCTTTCGCCATGTCG
GTCTCTTTTCTCTCATACATTCTCTCTTTTAGTCTCTTTGGTGTTTATTG
CTGTTGTCTGCTTTTCAAACAGGCATGAATAATGTCCATTACTTTTTCCT
CACTTGATTTTTTTCCTTTCTTTGCCGAAGGTCAATTATCATACACATCA
CCAGCCATCCCTGCCCCCCTCCTTCCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|573679

>mRNA_657-protein ID=mRNA_657-protein|Name=jgi.p|Nanoce1779_2|573679|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MRPLAEEETKKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSER
LMKTATNFGRDNLLSLGTCVGRFTKTEKFHISITFLDYLAQYASYKVWVK
PQSEMGFLYGNNIVKSGLGRMTEAIPQYAGVVVFSMTDIPLGFGVAAQPT
EVCKDLDPGANVVLHQGDVGEYLRVEDELS*
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mRNA from alignment at scaffold_2:121526..123160+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_657 ID=mRNA_657|Name=jgi.p|Nanoce1779_2|573679|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp|location=Sequence derived from alignment at scaffold_2:121526..123160+ (Nannochloropsis oceanica)
AGACACAGGCCATAAGTTTCTCGCTTCGACCTCCCCATCCCACCCCAGCG
CAGCCCATCTCCATCGTTCCCAACACAGCAACATTCTACCCACAAATAAT
GCGGCCCCTTGCAGAAGAGGAGACCAAGAAGGTCTTTGAGCGCCTGGCCA
AGTAGTAAGTACTTCACGGTGGCGCTGTCTTTCCCTCTTTTCCCCCTGTC
CTTTAATCCTGCCTTCTCTCGCCTCTCTTCTGTCGGCAAGGCAGCCATGT
CCGGTATAAAGGGTACTTCTAAGAACGACCTACTAACTCCTAACTCCCAT
ATCCACCCCTCCTTCCAAACCGTACCTATAAATCCCTCCTTCCACACAGC
GTCGGCGGAAACCTTGAGCAGCTCGTCAACCGTCCTGACGAACGGTATTG
CTTCCGCTACATGGATCAACGCGTGTATTACGTGAGTGAACGCTTGATGA
AGACCGCCACGAATTTCGGAAGGGACAATCTCCTATCTCTGGGCACGTGC
GTCGGGCGATTCACCAAGGTTCGTGAGGGCATCGAAGAAGTATTCGGTCT
ATCCCTTTTTATTGCATGTCCTTTGCTCGATGGTGGACCCAGCTCGTTCA
AGCGAAGACGCATGTCAGATAAGAAGGAATAAATGGATGAGAGGACTAAA
TTAAAAAGTAATGAGGCACGTTTGGAGAGGTGCTCGTATAGAAATATTCC
CTTTTCGATGTTTATGGCTGCGCTTTTCTCAACCTCCCACCATCCCTCCC
TCCCTGCCTTGCCGTCACTCAGACCGAGAAATTTCATATCAGCATCACCT
TCCTGGACTACTTGGCCCAGTACGCCAGCTATAAAGTCTGGGTCAAGCCG
CAAAGTGAGATGGGTTTCCTCTACGGCAACAACATAGTCAAATCGGGCCT
AGGGCGCATGACGGAGGCAATCCCGCAATATGCCGGGGTGGTTGTTTTTT
CCATGACCGATATTCCCTTGGGGTTTGGAGTGGCGGCCCAACCAACGGAA
GTTTGCAAGGATCTGGACCCCGGGGCAAATGTTGTGTTGCACCAGGGAGA
TGTGGGTGAGTATTTGAGGGTGGAGGATGAGCTGTCCTGAGGAGGGGGAG
GGAGGATGGGAGGATGGGTAGGAGGGAGGTTGTAGAAAGGGAGATGAGAG
AGCGAGGGAGAGATGGGGTAAAGTGAGAAGAGAGAAGGAAAGAAGGAAAT
CATGTACAGTTATTTACATGGGAGGAGGATGGTTGTGCGATTCGCGTTAT
ATTTCTCTCCGCTGTCTCTGAGTACGTTGTCTTTGTCTTTTTCCGGCTTG
TGGCGTTTAGATAGATGTACGGAGGGTGAACCGTGTTCCGCCGTCTCACT
TACTCACAGGAAAACACAGTCATATTTTTTAGCGAGAAGTCCAGCCCCAT
TCCTTCCTAATGAGGATTTTTTTCTTGGTCTTGCTCTTTCGCCATGTCGG
TCTCTTTTCTCTCATACATTCTCTCTTTTAGTCTCTTTGGTGTTTATTGC
TGTTGTCTGCTTTTCAAACAGGCATGAATAATGTCCATTACTTTTTCCTC
ACTTGATTTTTTTCCTTTCTTTGCCGAAGGTCAATTATCATACACATCAC
CAGCCATCCCTGCCCCCCTCCTTCCCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_2:121526..123160+

>mRNA_657 ID=mRNA_657|Name=jgi.p|Nanoce1779_2|573679|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at scaffold_2:121526..123160+ (Nannochloropsis oceanica)
ATGCGGCCCCTTGCAGAAGAGGAGACCAAGAAGGTCTTTGAGCGCCTGGC
CAAGTACGTCGGCGGAAACCTTGAGCAGCTCGTCAACCGTCCTGACGAAC
GGTATTGCTTCCGCTACATGGATCAACGCGTGTATTACGTGAGTGAACGC
TTGATGAAGACCGCCACGAATTTCGGAAGGGACAATCTCCTATCTCTGGG
CACGTGCGTCGGGCGATTCACCAAGACCGAGAAATTTCATATCAGCATCA
CCTTCCTGGACTACTTGGCCCAGTACGCCAGCTATAAAGTCTGGGTCAAG
CCGCAAAGTGAGATGGGTTTCCTCTACGGCAACAACATAGTCAAATCGGG
CCTAGGGCGCATGACGGAGGCAATCCCGCAATATGCCGGGGTGGTTGTTT
TTTCCATGACCGATATTCCCTTGGGGTTTGGAGTGGCGGCCCAACCAACG
GAAGTTTGCAAGGATCTGGACCCCGGGGCAAATGTTGTGTTGCACCAGGG
AGATGTGGGTGAGTATTTGAGGGTGGAGGATGAGCTGTCCTGAATGCGGC
CCCTTGCAGAAGAGGAGACCAAGAAGGTCTTTGAGCGCCTGGCCAAGTAC
GTCGGCGGAAACCTTGAGCAGCTCGTCAACCGTCCTGACGAACGGTATTG
CTTCCGCTACATGGATCAACGCGTGTATTACGTGAGTGAACGCTTGATGA
AGACCGCCACGAATTTCGGAAGGGACAATCTCCTATCTCTGGGCACGTGC
GTCGGGCGATTCACCAAGACCGAGAAATTTCATATCAGCATCACCTTCCT
GGACTACTTGGCCCAGTACGCCAGCTATAAAGTCTGGGTCAAGCCGCAAA
GTGAGATGGGTTTCCTCTACGGCAACAACATAGTCAAATCGGGCCTAGGG
CGCATGACGGAGGCAATCCCGCAATATGCCGGGGTGGTTGTTTTTTCCAT
GACCGATATTCCCTTGGGGTTTGGAGTGGCGGCCCAACCAACGGAAGTTT
GCAAGGATCTGGACCCCGGGGCAAATGTTGTGTTGCACCAGGGAGATGTG
GGTGAGTATTTGAGGGTGGAGGATGAGCTGTCCTGAATGCGGCCCCTTGC
AGAAGAGGAGACCAAGAAGGTCTTTGAGCGCCTGGCCAAGTACGTCGGCG
GAAACCTTGAGCAGCTCGTCAACCGTCCTGACGAACGGTATTGCTTCCGC
TACATGGATCAACGCGTGTATTACGTGAGTGAACGCTTGATGAAGACCGC
CACGAATTTCGGAAGGGACAATCTCCTATCTCTGGGCACGTGCGTCGGGC
GATTCACCAAGACCGAGAAATTTCATATCAGCATCACCTTCCTGGACTAC
TTGGCCCAGTACGCCAGCTATAAAGTCTGGGTCAAGCCGCAAAGTGAGAT
GGGTTTCCTCTACGGCAACAACATAGTCAAATCGGGCCTAGGGCGCATGA
CGGAGGCAATCCCGCAATATGCCGGGGTGGTTGTTTTTTCCATGACCGAT
ATTCCCTTGGGGTTTGGAGTGGCGGCCCAACCAACGGAAGTTTGCAAGGA
TCTGGACCCCGGGGCAAATGTTGTGTTGCACCAGGGAGATGTGGGTGAGT
ATTTGAGGGTGGAGGATGAGCTGTCCTGA
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Synonyms
Publications