jgi.p|Nanoce1779_2|651535, mRNA_6568 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|651535
Unique Name	mRNA_6568
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2395
Alignment location	scaffold_18:166300..168694 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	651621
Track	FilteredModels2
ProteinId	651535

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:166300..168694 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651535	gene_6568	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651535	mRNA_6568-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6568	CDS_6568	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:166300..168694+
coding sequence from alignment at scaffold_18:166300..168694+

mRNA sequence

>mRNA_6568 ID=mRNA_6568|Name=jgi.p|Nanoce1779_2|651535|organism=Nannochloropsis oceanica|type=mRNA|length=2395bp
GGAGAGGGAGAGAAAGAAAAAGGTTGTGGTATGGTGAGTGTGGTAAGCAT
AAAGGTGCACCAACGCTTCTCTACCGTATCACATTAAAAACGGCAAAAGG
ACAGTCATACGCTCCCCAAGACTCCGCTGCCCTACCATTACGAAGGTTGT
CGTAATCAGCCTCTTGCACCATCCCCTACACAAAAGCATGGACGCACCAT
TACCTAGGCAACAAGGCTACAATGTTGATGCAACTCAGGATGGCCTCCCA
GCGTCGAAGACCACCTCTGCATTGCCGTCTGCCGCACCGTTACCGCCAGC
GCCTCCTCGACCTCCCATGTGCAGCAAGGAAGCGAACCGCTACAAGTCGC
CCGCCAGTGGGGAACAAGACAATTCCGCCTATCGGCGCGCGGAGAAGCAG
TACAGACGCCAAAGCGTGGCTGTCAATAGGCGCCGAACTCGCTTTGTGCG
GCAGGACCCTGATCTCGGGGAGGCTGTTGATTTTGTCAGGGAAGGCGTGG
AGGACGACCCACGTGTGCGCCTCGTGACGGTAATGGAGGATGGACGTCGC
ATCTATGCGTTGCGAAATCGTCCGGGCTTTTACTACGTGCATGGTGCTTT
GGACTGGCGAAAGCAAGTGTATTGGGCGCGTTGCTGTTTGAGAGAGTTGA
GTAGGTCGCCTTTCACCAATATCACCAACAATCATGCGGAGATAAACAAC
GCTCTGGGCCACGACAAAGAGATCAGCAGCGGTGGTAGCTTGTGGCAACA
AGCTGTGCTAAGGGCAGAAAAAGATGAAGGGGGAGGAGATGGGGAGTTGT
TGCAGGCGGTGCAAGATTTGCATGCTCTGCGATGGGCTAATGTTGGTCTA
AATTATCTTTGGACGACGCGTCAATACGCAGCATCCGCAGTCAAGGACGA
GATCAAGGACGAGGACAAAGAACACAATAAGGACAAAGAAGGTCCTAGTA
TGGAGGACGAGGGGCAAGAGGACCAGGACGGCAGAAAGGAGGGGAAGGGC
GTTCAAGTGCGTGACACTCGCAAGGACAAGGACAGCCTTCCTTTCGCTTC
GACAAGCCATTACCAGCGTCAAGACTCGTTTCCGATTCCTCCAGCGTTGA
CAGAACTAGCGCGGGACATTCTAACTCTGGTGGCTCGCGCGGATAGTCAC
CACTTGGAGGAAAAGGAGGAGACTCGATTTGGAGCGGCAGCACCAGCATC
ACCATTGCCACCACCACAAGCAGCACAAGCAGAGGCATTTCAGGCAGAGG
CCGGAATTGTGAATTACTACCCCCCCGAAAGCAGCATGGGTGGGCATGTG
GACGACGCAGAGGGGGCTTTGGAGGTACCTCTTGTCTCGTTCAGCTTGGG
GTTGGGTGGTGTGTTTCTGATGGGAGGCAGGAGCAAGGAGGTGGAGCCGG
TGCCGATCGTTTTTCGGAGTGGGGATTGCATGGTCATGGGAGGGGAGGCG
CGCTTGTGTTTTCATGGAGTGCCATGTGTGTTGATGGAGAGTGCTCGGCC
AGACGAGCGGCTTGTAAATTGGAAAGCGTTGTCTGAGGTGGGAGGTAGAG
AGGGAGGAAGAGGGAAGAGGCCGAAGTGTACCGAGACGGAGGATCGATTG
TTGGCGCATTATTTGGCATCGTCGCGGGTGAACTTCAATGTGAGGCAGGT
TTGGAGGAGGAGGGGGTGGGAGGGACGGGCCTCGACGACTGCAGCACACC
AGCAATAGCATTTCACAAGAGAATCAATGGGGCTTCGCGGCATGCCAGGG
CGAAGAGGAAAGAAAAGACAAGAGGGAGGGATTACGGATCAAGCACTTTG
TCCCTTATGATATAAGAAGACGACCATAAATAACACAACAGAGAGAGAGG
AAGCAAGCGGAGGAGTAGATAGACCCCTCTTACAAATGACAATTAAGATA
TGCATAACGCTTAGTTTTTGCTTTTACTCGTCACTGACTTGTTGGTTAAT
AATGAAAAATAGTATGCTGGTTGACTTATCGTCATATCATCATCGTCGTC
GTCGCCATGGTCGCTTCCTAAAAAGAGGCGAGAGAGTTGGGGGGAAACTC
GCAGGGAGACATGCACACGAGCACACTCCACACACACAAAGACATGTATC
CGCCGCTATTCCTTCCCATTGGGCTTGTTCGGCCTCCTTTTTTGGGGGGG
CTTTTTCAGCCTCCTTTAATTCCTCTAATTTCGAAATCCAAGTGCCCAAA
GGGACTCCGTTGTGTTCACTTGGTACGGCAGTCGCAGCCGCTGTTGCTGC
TGCTTTTTTGTGTGTTTAGGTAATTTGTCACCTCCAGCGCACAGAGGCAT
CTCCACTCTACGTGCTTCTCTCCTTCGGTTTCCTTTTGCCTCCTCTCTAG
CTTTCTCTTCTTTCATCTCTATTTTCATTTGTATACACATGTTTC

protein sequence of jgi.p|Nanoce1779_2|651535

>mRNA_6568-protein ID=mRNA_6568-protein|Name=jgi.p|Nanoce1779_2|651535|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MDAPLPRQQGYNVDATQDGLPASKTTSALPSAAPLPPAPPRPPMCSKEAN
RYKSPASGEQDNSAYRRAEKQYRRQSVAVNRRRTRFVRQDPDLGEAVDFV
REGVEDDPRVRLVTVMEDGRRIYALRNRPGFYYVHGALDWRKQVYWARCC
LRELSRSPFTNITNNHAEINNALGHDKEISSGGSLWQQAVLRAEKDEGGG
DGELLQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIKDEDKEHNKDK
EGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPI
PPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPPPQAAQAEA
FQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSK
EVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSE
VGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQVWRRRGWEGRAST
TAAHQQ*

mRNA from alignment at scaffold_18:166300..168694+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6568 ID=mRNA_6568|Name=jgi.p|Nanoce1779_2|651535|organism=Nannochloropsis oceanica|type=mRNA|length=2395bp|location=Sequence derived from alignment at scaffold_18:166300..168694+ (Nannochloropsis oceanica)
GGAGAGGGAGAGAAAGAAAAAGGTTGTGGTATGGTGAGTGTGGTAAGCAT
AAAGGTGCACCAACGCTTCTCTACCGTATCACATTAAAAACGGCAAAAGG
ACAGTCATACGCTCCCCAAGACTCCGCTGCCCTACCATTACGAAGGTTGT
CGTAATCAGCCTCTTGCACCATCCCCTACACAAAAGCATGGACGCACCAT
TACCTAGGCAACAAGGCTACAATGTTGATGCAACTCAGGATGGCCTCCCA
GCGTCGAAGACCACCTCTGCATTGCCGTCTGCCGCACCGTTACCGCCAGC
GCCTCCTCGACCTCCCATGTGCAGCAAGGAAGCGAACCGCTACAAGTCGC
CCGCCAGTGGGGAACAAGACAATTCCGCCTATCGGCGCGCGGAGAAGCAG
TACAGACGCCAAAGCGTGGCTGTCAATAGGCGCCGAACTCGCTTTGTGCG
GCAGGACCCTGATCTCGGGGAGGCTGTTGATTTTGTCAGGGAAGGCGTGG
AGGACGACCCACGTGTGCGCCTCGTGACGGTAATGGAGGATGGACGTCGC
ATCTATGCGTTGCGAAATCGTCCGGGCTTTTACTACGTGCATGGTGCTTT
GGACTGGCGAAAGCAAGTGTATTGGGCGCGTTGCTGTTTGAGAGAGTTGA
GTAGGTCGCCTTTCACCAATATCACCAACAATCATGCGGAGATAAACAAC
GCTCTGGGCCACGACAAAGAGATCAGCAGCGGTGGTAGCTTGTGGCAACA
AGCTGTGCTAAGGGCAGAAAAAGATGAAGGGGGAGGAGATGGGGAGTTGT
TGCAGGCGGTGCAAGATTTGCATGCTCTGCGATGGGCTAATGTTGGTCTA
AATTATCTTTGGACGACGCGTCAATACGCAGCATCCGCAGTCAAGGACGA
GATCAAGGACGAGGACAAAGAACACAATAAGGACAAAGAAGGTCCTAGTA
TGGAGGACGAGGGGCAAGAGGACCAGGACGGCAGAAAGGAGGGGAAGGGC
GTTCAAGTGCGTGACACTCGCAAGGACAAGGACAGCCTTCCTTTCGCTTC
GACAAGCCATTACCAGCGTCAAGACTCGTTTCCGATTCCTCCAGCGTTGA
CAGAACTAGCGCGGGACATTCTAACTCTGGTGGCTCGCGCGGATAGTCAC
CACTTGGAGGAAAAGGAGGAGACTCGATTTGGAGCGGCAGCACCAGCATC
ACCATTGCCACCACCACAAGCAGCACAAGCAGAGGCATTTCAGGCAGAGG
CCGGAATTGTGAATTACTACCCCCCCGAAAGCAGCATGGGTGGGCATGTG
GACGACGCAGAGGGGGCTTTGGAGGTACCTCTTGTCTCGTTCAGCTTGGG
GTTGGGTGGTGTGTTTCTGATGGGAGGCAGGAGCAAGGAGGTGGAGCCGG
TGCCGATCGTTTTTCGGAGTGGGGATTGCATGGTCATGGGAGGGGAGGCG
CGCTTGTGTTTTCATGGAGTGCCATGTGTGTTGATGGAGAGTGCTCGGCC
AGACGAGCGGCTTGTAAATTGGAAAGCGTTGTCTGAGGTGGGAGGTAGAG
AGGGAGGAAGAGGGAAGAGGCCGAAGTGTACCGAGACGGAGGATCGATTG
TTGGCGCATTATTTGGCATCGTCGCGGGTGAACTTCAATGTGAGGCAGGT
TTGGAGGAGGAGGGGGTGGGAGGGACGGGCCTCGACGACTGCAGCACACC
AGCAATAGCATTTCACAAGAGAATCAATGGGGCTTCGCGGCATGCCAGGG
CGAAGAGGAAAGAAAAGACAAGAGGGAGGGATTACGGATCAAGCACTTTG
TCCCTTATGATATAAGAAGACGACCATAAATAACACAACAGAGAGAGAGG
AAGCAAGCGGAGGAGTAGATAGACCCCTCTTACAAATGACAATTAAGATA
TGCATAACGCTTAGTTTTTGCTTTTACTCGTCACTGACTTGTTGGTTAAT
AATGAAAAATAGTATGCTGGTTGACTTATCGTCATATCATCATCGTCGTC
GTCGCCATGGTCGCTTCCTAAAAAGAGGCGAGAGAGTTGGGGGGAAACTC
GCAGGGAGACATGCACACGAGCACACTCCACACACACAAAGACATGTATC
CGCCGCTATTCCTTCCCATTGGGCTTGTTCGGCCTCCTTTTTTGGGGGGG
CTTTTTCAGCCTCCTTTAATTCCTCTAATTTCGAAATCCAAGTGCCCAAA
GGGACTCCGTTGTGTTCACTTGGTACGGCAGTCGCAGCCGCTGTTGCTGC
TGCTTTTTTGTGTGTTTAGGTAATTTGTCACCTCCAGCGCACAGAGGCAT
CTCCACTCTACGTGCTTCTCTCCTTCGGTTTCCTTTTGCCTCCTCTCTAG
CTTTCTCTTCTTTCATCTCTATTTTCATTTGTATACACATGTTTC

Coding sequence (CDS) from alignment at scaffold_18:166300..168694+

>mRNA_6568 ID=mRNA_6568|Name=jgi.p|Nanoce1779_2|651535|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at scaffold_18:166300..168694+ (Nannochloropsis oceanica)
ATGGACGCACCATTACCTAGGCAACAAGGCTACAATGTTGATGCAACTCA
GGATGGCCTCCCAGCGTCGAAGACCACCTCTGCATTGCCGTCTGCCGCAC
CGTTACCGCCAGCGCCTCCTCGACCTCCCATGTGCAGCAAGGAAGCGAAC
CGCTACAAGTCGCCCGCCAGTGGGGAACAAGACAATTCCGCCTATCGGCG
CGCGGAGAAGCAGTACAGACGCCAAAGCGTGGCTGTCAATAGGCGCCGAA
CTCGCTTTGTGCGGCAGGACCCTGATCTCGGGGAGGCTGTTGATTTTGTC
AGGGAAGGCGTGGAGGACGACCCACGTGTGCGCCTCGTGACGGTAATGGA
GGATGGACGTCGCATCTATGCGTTGCGAAATCGTCCGGGCTTTTACTACG
TGCATGGTGCTTTGGACTGGCGAAAGCAAGTGTATTGGGCGCGTTGCTGT
TTGAGAGAGTTGAGTAGGTCGCCTTTCACCAATATCACCAACAATCATGC
GGAGATAAACAACGCTCTGGGCCACGACAAAGAGATCAGCAGCGGTGGTA
GCTTGTGGCAACAAGCTGTGCTAAGGGCAGAAAAAGATGAAGGGGGAGGA
GATGGGGAGTTGTTGCAGGCGGTGCAAGATTTGCATGCTCTGCGATGGGC
TAATGTTGGTCTAAATTATCTTTGGACGACGCGTCAATACGCAGCATCCG
CAGTCAAGGACGAGATCAAGGACGAGGACAAAGAACACAATAAGGACAAA
GAAGGTCCTAGTATGGAGGACGAGGGGCAAGAGGACCAGGACGGCAGAAA
GGAGGGGAAGGGCGTTCAAGTGCGTGACACTCGCAAGGACAAGGACAGCC
TTCCTTTCGCTTCGACAAGCCATTACCAGCGTCAAGACTCGTTTCCGATT
CCTCCAGCGTTGACAGAACTAGCGCGGGACATTCTAACTCTGGTGGCTCG
CGCGGATAGTCACCACTTGGAGGAAAAGGAGGAGACTCGATTTGGAGCGG
CAGCACCAGCATCACCATTGCCACCACCACAAGCAGCACAAGCAGAGGCA
TTTCAGGCAGAGGCCGGAATTGTGAATTACTACCCCCCCGAAAGCAGCAT
GGGTGGGCATGTGGACGACGCAGAGGGGGCTTTGGAGGTACCTCTTGTCT
CGTTCAGCTTGGGGTTGGGTGGTGTGTTTCTGATGGGAGGCAGGAGCAAG
GAGGTGGAGCCGGTGCCGATCGTTTTTCGGAGTGGGGATTGCATGGTCAT
GGGAGGGGAGGCGCGCTTGTGTTTTCATGGAGTGCCATGTGTGTTGATGG
AGAGTGCTCGGCCAGACGAGCGGCTTGTAAATTGGAAAGCGTTGTCTGAG
GTGGGAGGTAGAGAGGGAGGAAGAGGGAAGAGGCCGAAGTGTACCGAGAC
GGAGGATCGATTGTTGGCGCATTATTTGGCATCGTCGCGGGTGAACTTCA
ATGTGAGGCAGGTTTGGAGGAGGAGGGGGTGGGAGGGACGGGCCTCGACG
ACTGCAGCACACCAGCAATAG

Synonyms

Publications