jgi.p|Nanoce1779_2|597365, mRNA_6567 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597365
Unique NamemRNA_6567
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1227
Alignment locationscaffold_18:165066..166292 -

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Properties
Property NameValue
TranscriptId597451
TrackFilteredModels2
ProteinId597365
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:165066..166292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597365gene_6567Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597365mRNA_6567-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6567CDS_6567Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6567 ID=mRNA_6567|Name=jgi.p|Nanoce1779_2|597365|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp
ACAGCTTTGACCCGCATACCCCTTGTCAACGCAAACCCTGGGGAGAACCT
CCCCACCCCTCGTCCTCCGCCTCGTCATGGCCTCTCCCGCCCAACCACCA
GCACCAGCAGGAGCTCTAGAACCGTCCAAAGACAACGACAGCAAGCTTAT
AACCTCTATCACCAACTCACGCTACGCCCGAGCACTGCACAACGGGCATC
TAAGAGGCAATTTTCAAGACTACTATGCCTTCCATCCTGTCGCGCCGAGA
ATCACTGCCTTGCTGGGCGCGTCTGGGACGCCTGCCAGTACACTTAAGCA
GGACATCAAGGGGGCATTACAACACATACTTCACTGTGCAAAACAGGGGG
ACAGTAATGAGCCCTTGCTGATCGCAGATTGGGGGTGTAATTCAGGTGAC
TTGACGGCAGCCTTGTGCCGACGTCTCCGTGAGCTTCAACCAGACCGGCG
GGTGGTGGGGTTGGGACTGGACTTGGATGCGAATCTTATAAAGCGGGCCA
CTAGCAAGTACAGTGACATTGAAGAAGGGGTAGGTGTGACCTTTGCAGCT
GTGGATTTGGTATCGGATTGGTCACGGGCTGAGAAACTCATGCGGGCGTT
CCTGAAGGAGCACCACACAGATGGTATCGGCCGCCAGAAAGAAGCAGAGC
AAAAAGGACGTGTACCGACAAGAAAGTTCGATATATTGACCATCTTTTCG
ACCACCATGTGGATTCATCTTGTCCATGGTGAGGAGGCCTTGAAAGACTT
TTTGGTGCACGCCTCAGAATGGACATATTGCCTTGTCGTCGAGCCACAGA
CTCACAAAAATTATAAAACTGCCCGAAGACGTCTCAAACGGGTGGGACTG
CAGCCGTGTCAGCATTTTAACGCTATGGCTGATTCGGAATACCCGCGCAT
GTTAATGACGTGTGCAGACAGAGGGCTCGTGAGGGAGTTTGAAGGTTCGA
TGAACATGGGCAAGTCTAGTGATTGGGGGAGGGAGCTGCACATTTTTTGG
AAGAGGGAAGAGGGAAAGGAGGAAAATTATGAGGGAGGGGACAAAATGCG
AAATAAATTGAGCAAAAAACGATAGCGCGAGGAGGAGGTGGGACAGGAGG
AAGGAGGAGCGGGGGTGGACGGAGACCCTTTTAGAAAGGCGGACAGTCTG
ACAAGCGCGTCTTGAGCAAATAGAGAACGATAACAATGTGAATGAGAATG
ATGCCAATACAGCTTTAATCGACTCAT
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protein sequence of jgi.p|Nanoce1779_2|597365

>mRNA_6567-protein ID=mRNA_6567-protein|Name=jgi.p|Nanoce1779_2|597365|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MASPAQPPAPAGALEPSKDNDSKLITSITNSRYARALHNGHLRGNFQDYY
AFHPVAPRITALLGASGTPASTLKQDIKGALQHILHCAKQGDSNEPLLIA
DWGCNSGDLTAALCRRLRELQPDRRVVGLGLDLDANLIKRATSKYSDIEE
GVGVTFAAVDLVSDWSRAEKLMRAFLKEHHTDGIGRQKEAEQKGRVPTRK
FDILTIFSTTMWIHLVHGEEALKDFLVHASEWTYCLVVEPQTHKNYKTAR
RRLKRVGLQPCQHFNAMADSEYPRMLMTCADRGLVREFEGSMNMGKSSDW
GRELHIFWKREEGKEENYEGGDKMRNKLSKKR*
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mRNA from alignment at scaffold_18:165066..166292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6567 ID=mRNA_6567|Name=jgi.p|Nanoce1779_2|597365|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp|location=Sequence derived from alignment at scaffold_18:165066..166292- (Nannochloropsis oceanica)
ACAGCTTTGACCCGCATACCCCTTGTCAACGCAAACCCTGGGGAGAACCT
CCCCACCCCTCGTCCTCCGCCTCGTCATGGCCTCTCCCGCCCAACCACCA
GCACCAGCAGGAGCTCTAGAACCGTCCAAAGACAACGACAGCAAGCTTAT
AACCTCTATCACCAACTCACGCTACGCCCGAGCACTGCACAACGGGCATC
TAAGAGGCAATTTTCAAGACTACTATGCCTTCCATCCTGTCGCGCCGAGA
ATCACTGCCTTGCTGGGCGCGTCTGGGACGCCTGCCAGTACACTTAAGCA
GGACATCAAGGGGGCATTACAACACATACTTCACTGTGCAAAACAGGGGG
ACAGTAATGAGCCCTTGCTGATCGCAGATTGGGGGTGTAATTCAGGTGAC
TTGACGGCAGCCTTGTGCCGACGTCTCCGTGAGCTTCAACCAGACCGGCG
GGTGGTGGGGTTGGGACTGGACTTGGATGCGAATCTTATAAAGCGGGCCA
CTAGCAAGTACAGTGACATTGAAGAAGGGGTAGGTGTGACCTTTGCAGCT
GTGGATTTGGTATCGGATTGGTCACGGGCTGAGAAACTCATGCGGGCGTT
CCTGAAGGAGCACCACACAGATGGTATCGGCCGCCAGAAAGAAGCAGAGC
AAAAAGGACGTGTACCGACAAGAAAGTTCGATATATTGACCATCTTTTCG
ACCACCATGTGGATTCATCTTGTCCATGGTGAGGAGGCCTTGAAAGACTT
TTTGGTGCACGCCTCAGAATGGACATATTGCCTTGTCGTCGAGCCACAGA
CTCACAAAAATTATAAAACTGCCCGAAGACGTCTCAAACGGGTGGGACTG
CAGCCGTGTCAGCATTTTAACGCTATGGCTGATTCGGAATACCCGCGCAT
GTTAATGACGTGTGCAGACAGAGGGCTCGTGAGGGAGTTTGAAGGTTCGA
TGAACATGGGCAAGTCTAGTGATTGGGGGAGGGAGCTGCACATTTTTTGG
AAGAGGGAAGAGGGAAAGGAGGAAAATTATGAGGGAGGGGACAAAATGCG
AAATAAATTGAGCAAAAAACGATAGCGCGAGGAGGAGGTGGGACAGGAGG
AAGGAGGAGCGGGGGTGGACGGAGACCCTTTTAGAAAGGCGGACAGTCTG
ACAAGCGCGTCTTGAGCAAATAGAGAACGATAACAATGTGAATGAGAATG
ATGCCAATACAGCTTTAATCGACTCAT
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Coding sequence (CDS) from alignment at scaffold_18:165066..166292-

>mRNA_6567 ID=mRNA_6567|Name=jgi.p|Nanoce1779_2|597365|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_18:165066..166292- (Nannochloropsis oceanica)
ATGGCCTCTCCCGCCCAACCACCAGCACCAGCAGGAGCTCTAGAACCGTC
CAAAGACAACGACAGCAAGCTTATAACCTCTATCACCAACTCACGCTACG
CCCGAGCACTGCACAACGGGCATCTAAGAGGCAATTTTCAAGACTACTAT
GCCTTCCATCCTGTCGCGCCGAGAATCACTGCCTTGCTGGGCGCGTCTGG
GACGCCTGCCAGTACACTTAAGCAGGACATCAAGGGGGCATTACAACACA
TACTTCACTGTGCAAAACAGGGGGACAGTAATGAGCCCTTGCTGATCGCA
GATTGGGGGTGTAATTCAGGTGACTTGACGGCAGCCTTGTGCCGACGTCT
CCGTGAGCTTCAACCAGACCGGCGGGTGGTGGGGTTGGGACTGGACTTGG
ATGCGAATCTTATAAAGCGGGCCACTAGCAAGTACAGTGACATTGAAGAA
GGGGTAGGTGTGACCTTTGCAGCTGTGGATTTGGTATCGGATTGGTCACG
GGCTGAGAAACTCATGCGGGCGTTCCTGAAGGAGCACCACACAGATGGTA
TCGGCCGCCAGAAAGAAGCAGAGCAAAAAGGACGTGTACCGACAAGAAAG
TTCGATATATTGACCATCTTTTCGACCACCATGTGGATTCATCTTGTCCA
TGGTGAGGAGGCCTTGAAAGACTTTTTGGTGCACGCCTCAGAATGGACAT
ATTGCCTTGTCGTCGAGCCACAGACTCACAAAAATTATAAAACTGCCCGA
AGACGTCTCAAACGGGTGGGACTGCAGCCGTGTCAGCATTTTAACGCTAT
GGCTGATTCGGAATACCCGCGCATGTTAATGACGTGTGCAGACAGAGGGC
TCGTGAGGGAGTTTGAAGGTTCGATGAACATGGGCAAGTCTAGTGATTGG
GGGAGGGAGCTGCACATTTTTTGGAAGAGGGAAGAGGGAAAGGAGGAAAA
TTATGAGGGAGGGGACAAAATGCGAAATAAATTGAGCAAAAAACGATAG
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Synonyms
Publications