jgi.p|Nanoce1779_2|597361, mRNA_6566 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597361
Unique NamemRNA_6566
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length635
Alignment locationscaffold_18:164431..165065 +

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Properties
Property NameValue
TranscriptId597447
TrackFilteredModels2
ProteinId597361
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:164431..165065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597361gene_6566Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597361mRNA_6566-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6566CDS_6566Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6566 ID=mRNA_6566|Name=jgi.p|Nanoce1779_2|597361|organism=Nannochloropsis oceanica|type=mRNA|length=635bp
ACAGGCGACCTCCCGTCCTTAATTCCAGGCCAACCATCCACTGCTCTAGC
GCCACACAGTTTCGTAGACTATGAGCGACCCCCAAGCCCGTCTGCAAGCA
GCCGTAACGGCATCAATGGACAAGTTGGACCGGGCCTATATCCGGCAGCT
CAGCAAGAAGGCTTATTCATGCATGGCGACGTGCCACGACCAAAGTAGTT
ACACCTCCCAAGACATCCAGCAATGCGTCGGGGCATGTTCTATGGGCCTG
CAAGAAGTCAATGCCCTGATCGGGAACGAGCTCCAATACTTCCAAAACCG
GTTGCAGCGCTGCCAGCAATCTTGCGAAGACGAGGTGCGGGACGCTCAGG
CCAAGATGGGGGGAGGAAAACCCGACCCGTCACAACAAACAAAGCTCCAA
GGAGTCTACGACAAGTGCGTGGGCAAGTGTATTGACTCTCATTTACCCCT
GATAAATGCCATGGAGAGCAAATTGGCAGGGGAGTGCAAAAGGCGGCTAT
AAATTATGCGGAGATCAGAAAGATTTTGAGGACTTTGTCCGGTGAGGGGG
TAAATTGAAAATCTTCTTGATGCGTACCTGCTCGTAAAAGCTACTTAATG
GGAGCAAAAGCAAAACAACGTCTACTTTCAACCAC
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protein sequence of jgi.p|Nanoce1779_2|597361

>mRNA_6566-protein ID=mRNA_6566-protein|Name=jgi.p|Nanoce1779_2|597361|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MSDPQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQ
QCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGK
PDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKLAGECKRRL*
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mRNA from alignment at scaffold_18:164431..165065+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6566 ID=mRNA_6566|Name=jgi.p|Nanoce1779_2|597361|organism=Nannochloropsis oceanica|type=mRNA|length=635bp|location=Sequence derived from alignment at scaffold_18:164431..165065+ (Nannochloropsis oceanica)
ACAGGCGACCTCCCGTCCTTAATTCCAGGCCAACCATCCACTGCTCTAGC
GCCACACAGTTTCGTAGACTATGAGCGACCCCCAAGCCCGTCTGCAAGCA
GCCGTAACGGCATCAATGGACAAGTTGGACCGGGCCTATATCCGGCAGCT
CAGCAAGAAGGCTTATTCATGCATGGCGACGTGCCACGACCAAAGTAGTT
ACACCTCCCAAGACATCCAGCAATGCGTCGGGGCATGTTCTATGGGCCTG
CAAGAAGTCAATGCCCTGATCGGGAACGAGCTCCAATACTTCCAAAACCG
GTTGCAGCGCTGCCAGCAATCTTGCGAAGACGAGGTGCGGGACGCTCAGG
CCAAGATGGGGGGAGGAAAACCCGACCCGTCACAACAAACAAAGCTCCAA
GGAGTCTACGACAAGTGCGTGGGCAAGTGTATTGACTCTCATTTACCCCT
GATAAATGCCATGGAGAGCAAATTGGCAGGGGAGTGCAAAAGGCGGCTAT
AAATTATGCGGAGATCAGAAAGATTTTGAGGACTTTGTCCGGTGAGGGGG
TAAATTGAAAATCTTCTTGATGCGTACCTGCTCGTAAAAGCTACTTAATG
GGAGCAAAAGCAAAACAACGTCTACTTTCAACCAC
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Coding sequence (CDS) from alignment at scaffold_18:164431..165065+

>mRNA_6566 ID=mRNA_6566|Name=jgi.p|Nanoce1779_2|597361|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_18:164431..165065+ (Nannochloropsis oceanica)
ATGAGCGACCCCCAAGCCCGTCTGCAAGCAGCCGTAACGGCATCAATGGA
CAAGTTGGACCGGGCCTATATCCGGCAGCTCAGCAAGAAGGCTTATTCAT
GCATGGCGACGTGCCACGACCAAAGTAGTTACACCTCCCAAGACATCCAG
CAATGCGTCGGGGCATGTTCTATGGGCCTGCAAGAAGTCAATGCCCTGAT
CGGGAACGAGCTCCAATACTTCCAAAACCGGTTGCAGCGCTGCCAGCAAT
CTTGCGAAGACGAGGTGCGGGACGCTCAGGCCAAGATGGGGGGAGGAAAA
CCCGACCCGTCACAACAAACAAAGCTCCAAGGAGTCTACGACAAGTGCGT
GGGCAAGTGTATTGACTCTCATTTACCCCTGATAAATGCCATGGAGAGCA
AATTGGCAGGGGAGTGCAAAAGGCGGCTATAA
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Synonyms
Publications