jgi.p|Nanoce1779_2|640858, mRNA_6564 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640858
Unique NamemRNA_6564
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length492
Alignment locationscaffold_18:161528..162019 +

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Properties
Property NameValue
TranscriptId640944
TrackFilteredModels2
ProteinId640858
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:161528..162019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640858gene_6564Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640858mRNA_6564-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6564CDS_6564Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6564 ID=mRNA_6564|Name=jgi.p|Nanoce1779_2|640858|organism=Nannochloropsis oceanica|type=mRNA|length=492bp
ATGCCTCCATCACTTAAGCGGCTTGGCTTCACTTTACTAGGAGCGAGCTT
GGTGTTAACTGCTATGGGAATATCGCTTTTCTTTGAAAGGAATCTTTTAA
GATTGGGTAATTTGTGCATGATTCTGGGATTGCCTTTGTATTTTGGGCCT
GGGCGTATTATGCGTCTCCTGTTCGCAAAGGAGAAGTTGAGAGCATCCAT
TTGTTTTTGTCTGGGGGTGTTTCTGGTGTTGAGAGGCAATTCGTTCTTCG
GCATGTTGTTGGAAATCTTTGGCTTCTTCAACTTGTTTGCAAACTTTTTC
CCGGTCGTGTTGGCGGTGTTGAGGAATCTGCCGATAGTAGGGGACTTGCT
GAAGAAGCCTGAGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGA
AATGGGGTAGGGGCGATTATTATGGAGGGAGGGAGAGTGGCCCGAGGAGC
AGCAGAGGACCTTATTCAAGTGATTATGATGATAGTTGGTGA
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protein sequence of jgi.p|Nanoce1779_2|640858

>mRNA_6564-protein ID=mRNA_6564-protein|Name=jgi.p|Nanoce1779_2|640858|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MPPSLKRLGFTLLGASLVLTAMGISLFFERNLLRLGNLCMILGLPLYFGP
GRIMRLLFAKEKLRASICFCLGVFLVLRGNSFFGMLLEIFGFFNLFANFF
PVVLAVLRNLPIVGDLLKKPEGGGGGGGGGGGGKWGRGDYYGGRESGPRS
SRGPYSSDYDDSW*
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mRNA from alignment at scaffold_18:161528..162019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6564 ID=mRNA_6564|Name=jgi.p|Nanoce1779_2|640858|organism=Nannochloropsis oceanica|type=mRNA|length=492bp|location=Sequence derived from alignment at scaffold_18:161528..162019+ (Nannochloropsis oceanica)
ATGCCTCCATCACTTAAGCGGCTTGGCTTCACTTTACTAGGAGCGAGCTT
GGTGTTAACTGCTATGGGAATATCGCTTTTCTTTGAAAGGAATCTTTTAA
GATTGGGTAATTTGTGCATGATTCTGGGATTGCCTTTGTATTTTGGGCCT
GGGCGTATTATGCGTCTCCTGTTCGCAAAGGAGAAGTTGAGAGCATCCAT
TTGTTTTTGTCTGGGGGTGTTTCTGGTGTTGAGAGGCAATTCGTTCTTCG
GCATGTTGTTGGAAATCTTTGGCTTCTTCAACTTGTTTGCAAACTTTTTC
CCGGTCGTGTTGGCGGTGTTGAGGAATCTGCCGATAGTAGGGGACTTGCT
GAAGAAGCCTGAGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGA
AATGGGGTAGGGGCGATTATTATGGAGGGAGGGAGAGTGGCCCGAGGAGC
AGCAGAGGACCTTATTCAAGTGATTATGATGATAGTTGGTGA
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Coding sequence (CDS) from alignment at scaffold_18:161528..162019+

>mRNA_6564 ID=mRNA_6564|Name=jgi.p|Nanoce1779_2|640858|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_18:161528..162019+ (Nannochloropsis oceanica)
ATGCCTCCATCACTTAAGCGGCTTGGCTTCACTTTACTAGGAGCGAGCTT
GGTGTTAACTGCTATGGGAATATCGCTTTTCTTTGAAAGGAATCTTTTAA
GATTGGGTAATTTGTGCATGATTCTGGGATTGCCTTTGTATTTTGGGCCT
GGGCGTATTATGCGTCTCCTGTTCGCAAAGGAGAAGTTGAGAGCATCCAT
TTGTTTTTGTCTGGGGGTGTTTCTGGTGTTGAGAGGCAATTCGTTCTTCG
GCATGTTGTTGGAAATCTTTGGCTTCTTCAACTTGTTTGCAAACTTTTTC
CCGGTCGTGTTGGCGGTGTTGAGGAATCTGCCGATAGTAGGGGACTTGCT
GAAGAAGCCTGAGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGA
AATGGGGTAGGGGCGATTATTATGGAGGGAGGGAGAGTGGCCCGAGGAGC
AGCAGAGGACCTTATTCAAGTGATTATGATGATAGTTGGTGA
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Synonyms
Publications