jgi.p|Nanoce1779_2|651520, mRNA_6562 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|651520
Unique Name	mRNA_6562
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1212
Alignment location	scaffold_18:156881..158092 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	651606
Track	FilteredModels2
ProteinId	651520

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:156881..158092 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651520	gene_6562	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651520	mRNA_6562-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6562	CDS_6562	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:156881..158092+
coding sequence from alignment at scaffold_18:156881..158092+

mRNA sequence

>mRNA_6562 ID=mRNA_6562|Name=jgi.p|Nanoce1779_2|651520|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
ATGCCGTCCCCCGGCGGCCCCGGCAAAGCCAATGCAAGTGCCAATACCCG
TGCAGACAAGACGACTGCAGGAAAAGCTAAGACAAGCACTAAGAGAGGAG
CTACTGCTGCTGGTAAAAAAGGCTCGAAGAAGGAAGACAGCGAGACCAGC
ATCTCTTACGCTTCTCTTGAGGATTTTTCAGTCAACCAGCAATATGAAAA
TATGTCCATGGCAGGGCTGCAAGATGCCGTGGGACAACTAGAGCAGAGTA
CGGCTGATGCCCGAATGTCTCACTCAGATGCGCAGGCCGAACAAGACGCT
TTCCACCAGGAGCATACCATCACCATTCAATCCGAGCTGCGCGTGGCCAC
AAAAGCCTTGACAGAAATTCAAAAGCAAGTTGAAGATCTAAGCACAGACC
ACCACTTGGAGCTGCGGGCTTACCGAGACAAACTGATTGCCCTCCATTAC
TACCACACCCTGAACTTGACGTCCGTGGCTTCAGAACGTGAGCAGCTCCT
TGGCAAGGAAGTCGAAGCACATACTTCAAGTGTTCATATGATCCAGATAA
AGCAACAACTCGGTCAGTCTTCCTCCTGGTCTTTTGGCAGCGGTCACCGC
ACCAGAACAGGAGACGAAGGCGATAGGCTGCAGGACTGCCTTACCAACGA
ATGCATCCACTTACAACAGTCATTGGAAAGCAATCTCTTAGACATTGAAG
GCGTCTGTACAACCCGCTTTGCACAGCTACAGAAAAATCTGGAGCTTCGG
CACATGAAGGAGATGCATGGAATGGAAGAGCGCGCGGACCAGCACCGGCA
AGAATTGGTGCAGCAACACGAAGCAGTCATAAAAAAACTGCAGAACTACT
ATCAGAACGTGGTAGAAGAGCAGAGTCAACGACTCCAGGCCCGTGAGCAC
ACGAGGATAACAGCCGAGGCCAAGGCCAACAGCGACCGGATTCGAAGCAA
GAAATTGGAGGAGGCGATTGATCAGCTGCGACAGCCCTTGGCCGTCGCCA
TCTTGCGAGAGGCAGAGCTCAAGAAGGCAGTAAAGGTCCGTGCAAGGGAC
AAAGCCTCGTTGCGGCACACCCGCAGCCGGCTACGTTTTCTTGATGCCAA
GATTCAGGAGGCGGAGCGGATACAGCTCGTGCAACGCGCGGCGGTTGAGG
CGTTGGTAGAGGAAAAGGAGGAGGAGGAGGAGCGCGAGATCGAAGCAGTA
GTGCAGAAATAA

protein sequence of jgi.p|Nanoce1779_2|651520

>mRNA_6562-protein ID=mRNA_6562-protein|Name=jgi.p|Nanoce1779_2|651520|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MPSPGGPGKANASANTRADKTTAGKAKTSTKRGATAAGKKGSKKEDSETS
ISYASLEDFSVNQQYENMSMAGLQDAVGQLEQSTADARMSHSDAQAEQDA
FHQEHTITIQSELRVATKALTEIQKQVEDLSTDHHLELRAYRDKLIALHY
YHTLNLTSVASEREQLLGKEVEAHTSSVHMIQIKQQLGQSSSWSFGSGHR
TRTGDEGDRLQDCLTNECIHLQQSLESNLLDIEGVCTTRFAQLQKNLELR
HMKEMHGMEERADQHRQELVQQHEAVIKKLQNYYQNVVEEQSQRLQAREH
TRITAEAKANSDRIRSKKLEEAIDQLRQPLAVAILREAELKKAVKVRARD
KASLRHTRSRLRFLDAKIQEAERIQLVQRAAVEALVEEKEEEEEREIEAV
VQK*

mRNA from alignment at scaffold_18:156881..158092+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6562 ID=mRNA_6562|Name=jgi.p|Nanoce1779_2|651520|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at scaffold_18:156881..158092+ (Nannochloropsis oceanica)
ATGCCGTCCCCCGGCGGCCCCGGCAAAGCCAATGCAAGTGCCAATACCCG
TGCAGACAAGACGACTGCAGGAAAAGCTAAGACAAGCACTAAGAGAGGAG
CTACTGCTGCTGGTAAAAAAGGCTCGAAGAAGGAAGACAGCGAGACCAGC
ATCTCTTACGCTTCTCTTGAGGATTTTTCAGTCAACCAGCAATATGAAAA
TATGTCCATGGCAGGGCTGCAAGATGCCGTGGGACAACTAGAGCAGAGTA
CGGCTGATGCCCGAATGTCTCACTCAGATGCGCAGGCCGAACAAGACGCT
TTCCACCAGGAGCATACCATCACCATTCAATCCGAGCTGCGCGTGGCCAC
AAAAGCCTTGACAGAAATTCAAAAGCAAGTTGAAGATCTAAGCACAGACC
ACCACTTGGAGCTGCGGGCTTACCGAGACAAACTGATTGCCCTCCATTAC
TACCACACCCTGAACTTGACGTCCGTGGCTTCAGAACGTGAGCAGCTCCT
TGGCAAGGAAGTCGAAGCACATACTTCAAGTGTTCATATGATCCAGATAA
AGCAACAACTCGGTCAGTCTTCCTCCTGGTCTTTTGGCAGCGGTCACCGC
ACCAGAACAGGAGACGAAGGCGATAGGCTGCAGGACTGCCTTACCAACGA
ATGCATCCACTTACAACAGTCATTGGAAAGCAATCTCTTAGACATTGAAG
GCGTCTGTACAACCCGCTTTGCACAGCTACAGAAAAATCTGGAGCTTCGG
CACATGAAGGAGATGCATGGAATGGAAGAGCGCGCGGACCAGCACCGGCA
AGAATTGGTGCAGCAACACGAAGCAGTCATAAAAAAACTGCAGAACTACT
ATCAGAACGTGGTAGAAGAGCAGAGTCAACGACTCCAGGCCCGTGAGCAC
ACGAGGATAACAGCCGAGGCCAAGGCCAACAGCGACCGGATTCGAAGCAA
GAAATTGGAGGAGGCGATTGATCAGCTGCGACAGCCCTTGGCCGTCGCCA
TCTTGCGAGAGGCAGAGCTCAAGAAGGCAGTAAAGGTCCGTGCAAGGGAC
AAAGCCTCGTTGCGGCACACCCGCAGCCGGCTACGTTTTCTTGATGCCAA
GATTCAGGAGGCGGAGCGGATACAGCTCGTGCAACGCGCGGCGGTTGAGG
CGTTGGTAGAGGAAAAGGAGGAGGAGGAGGAGCGCGAGATCGAAGCAGTA
GTGCAGAAATAA

Coding sequence (CDS) from alignment at scaffold_18:156881..158092+

>mRNA_6562 ID=mRNA_6562|Name=jgi.p|Nanoce1779_2|651520|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_18:156881..158092+ (Nannochloropsis oceanica)
ATGCCGTCCCCCGGCGGCCCCGGCAAAGCCAATGCAAGTGCCAATACCCG
TGCAGACAAGACGACTGCAGGAAAAGCTAAGACAAGCACTAAGAGAGGAG
CTACTGCTGCTGGTAAAAAAGGCTCGAAGAAGGAAGACAGCGAGACCAGC
ATCTCTTACGCTTCTCTTGAGGATTTTTCAGTCAACCAGCAATATGAAAA
TATGTCCATGGCAGGGCTGCAAGATGCCGTGGGACAACTAGAGCAGAGTA
CGGCTGATGCCCGAATGTCTCACTCAGATGCGCAGGCCGAACAAGACGCT
TTCCACCAGGAGCATACCATCACCATTCAATCCGAGCTGCGCGTGGCCAC
AAAAGCCTTGACAGAAATTCAAAAGCAAGTTGAAGATCTAAGCACAGACC
ACCACTTGGAGCTGCGGGCTTACCGAGACAAACTGATTGCCCTCCATTAC
TACCACACCCTGAACTTGACGTCCGTGGCTTCAGAACGTGAGCAGCTCCT
TGGCAAGGAAGTCGAAGCACATACTTCAAGTGTTCATATGATCCAGATAA
AGCAACAACTCGGTCAGTCTTCCTCCTGGTCTTTTGGCAGCGGTCACCGC
ACCAGAACAGGAGACGAAGGCGATAGGCTGCAGGACTGCCTTACCAACGA
ATGCATCCACTTACAACAGTCATTGGAAAGCAATCTCTTAGACATTGAAG
GCGTCTGTACAACCCGCTTTGCACAGCTACAGAAAAATCTGGAGCTTCGG
CACATGAAGGAGATGCATGGAATGGAAGAGCGCGCGGACCAGCACCGGCA
AGAATTGGTGCAGCAACACGAAGCAGTCATAAAAAAACTGCAGAACTACT
ATCAGAACGTGGTAGAAGAGCAGAGTCAACGACTCCAGGCCCGTGAGCAC
ACGAGGATAACAGCCGAGGCCAAGGCCAACAGCGACCGGATTCGAAGCAA
GAAATTGGAGGAGGCGATTGATCAGCTGCGACAGCCCTTGGCCGTCGCCA
TCTTGCGAGAGGCAGAGCTCAAGAAGGCAGTAAAGGTCCGTGCAAGGGAC
AAAGCCTCGTTGCGGCACACCCGCAGCCGGCTACGTTTTCTTGATGCCAA
GATTCAGGAGGCGGAGCGGATACAGCTCGTGCAACGCGCGGCGGTTGAGG
CGTTGGTAGAGGAAAAGGAGGAGGAGGAGGAGCGCGAGATCGAAGCAGTA
GTGCAGAAATAA

Synonyms

Publications