jgi.p|Nanoce1779_2|597349, mRNA_6561 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597349
Unique NamemRNA_6561
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1261
Alignment locationscaffold_18:154420..155680 +

Link to JBrowse

Properties
Property NameValue
TranscriptId597435
TrackFilteredModels2
ProteinId597349
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:154420..155680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597349gene_6561Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597349mRNA_6561-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6561CDS_6561Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6561 ID=mRNA_6561|Name=jgi.p|Nanoce1779_2|597349|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
CCCATATAATAAGACATGTTACCTTCATAAGCACATAAATAGGAACATCT
TATGCTACTCTGTTCCTTTATCTCCTCCACTCACACCTGTCGTTTGCTCA
CCGACTTTGGTCCTTGTGCAATTGGCAGGAGATGAGGAGGCCATCCTCAT
TACCCCCCCATCGCATCGTGCCCGAGTAGTAGGGGAACCCGCGCCCCATC
CGATGACATAGATAATGTGTTGGCGCATGGATCAATGCGGACGCATCATG
AAACGCGGCCGAATCTAACTCACTCTCTTCCTTTCCTATCCTGCCAACTC
ACACAGGCGGGCGGCTGCACAAGGACGACGAACAAAGCAAGAGGGGAAGT
TAGCATACGAAGATATCTCGTCCATCAATCACAGCCGCCTCTGAAGCATG
TCTGTCAACGAGCATCGCCCACCACCCGCCGACAAGAAGTTCGAATCGGT
GCGTATTCGAGAGGCTGTAGCTGTCTTATTTATATTGTCGCACGGAAAAA
TCTCGTGTAATGTTTGAGGCAGCACCTATAGGGCAAGCGCGCTCACCCTC
ATTTTTTTTTCCTTTCCCGCACCATCTACCTTTCACCACCGCAGCTCGAG
TACACGGATGAGCACTCTCGGACCTTTGTTTTTGGTGATGAGGATCACAC
ACTGGGCAATTCCTTACGGCATGTGCTGATGGGACGGAAGGAGACGACTT
TTTGCGGCTACAGTGTGCCCCACCCCTCCGAGCCTAAAATGAATGTTCGG
CTTCAGACGTCCACGAGCAAAACCGCGGTGGAAGTGCTGAAAGACGGGCT
GCACGAATTGGTGGAGATTTGCGATTTGTTTGATTTCACATTGGATAGTG
CCATTGCAGGGTACGAGGCACGCGAGAAGGATGCGGGGGCGGAGAGTAAA
GGACAGTCCAAATCGGTCTGAGCGACAGAAGAGAAGATAGAGGCAGGAGG
AAAGCCAGGGGAGATGTATAGTAGACCAAAAGAGAGATCTATTGAAAGTA
TGAGTACAGGAAGAAAAGAGAGCAGTCAATTTAATTTGAGAGCGGTCTAT
TTATAAGTGTTTCTTGCGTTTTGGGGATTTGATCACCTCACTACACTTAG
GATTTCATTCTCCCTCTCACTATTTCCGATGTCAATCGAGCACGAGTGAA
CACACTGCGACAGTGGTTAATAGTTCCTTTGTACAGCGTCATATTGCCTG
CCTGCGATAATCGCTTTGCTTTGCGTGTATCTGATGGAAAGGCGAAGCGC
CACAGAGCAGC
back to top

protein sequence of jgi.p|Nanoce1779_2|597349

>mRNA_6561-protein ID=mRNA_6561-protein|Name=jgi.p|Nanoce1779_2|597349|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDL
FDFTLDSAIAGYEAREKDAGAESKGQSKSV*
back to top

mRNA from alignment at scaffold_18:154420..155680+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6561 ID=mRNA_6561|Name=jgi.p|Nanoce1779_2|597349|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp|location=Sequence derived from alignment at scaffold_18:154420..155680+ (Nannochloropsis oceanica)
CCCATATAATAAGACATGTTACCTTCATAAGCACATAAATAGGAACATCT
TATGCTACTCTGTTCCTTTATCTCCTCCACTCACACCTGTCGTTTGCTCA
CCGACTTTGGTCCTTGTGCAATTGGCAGGAGATGAGGAGGCCATCCTCAT
TACCCCCCCATCGCATCGTGCCCGAGTAGTAGGGGAACCCGCGCCCCATC
CGATGACATAGATAATGTGTTGGCGCATGGATCAATGCGGACGCATCATG
AAACGCGGCCGAATCTAACTCACTCTCTTCCTTTCCTATCCTGCCAACTC
ACACAGGCGGGCGGCTGCACAAGGACGACGAACAAAGCAAGAGGGGAAGT
TAGCATACGAAGATATCTCGTCCATCAATCACAGCCGCCTCTGAAGCATG
TCTGTCAACGAGCATCGCCCACCACCCGCCGACAAGAAGTTCGAATCGGT
GCGTATTCGAGAGGCTGTAGCTGTCTTATTTATATTGTCGCACGGAAAAA
TCTCGTGTAATGTTTGAGGCAGCACCTATAGGGCAAGCGCGCTCACCCTC
ATTTTTTTTTCCTTTCCCGCACCATCTACCTTTCACCACCGCAGCTCGAG
TACACGGATGAGCACTCTCGGACCTTTGTTTTTGGTGATGAGGATCACAC
ACTGGGCAATTCCTTACGGCATGTGCTGATGGGACGGAAGGAGACGACTT
TTTGCGGCTACAGTGTGCCCCACCCCTCCGAGCCTAAAATGAATGTTCGG
CTTCAGACGTCCACGAGCAAAACCGCGGTGGAAGTGCTGAAAGACGGGCT
GCACGAATTGGTGGAGATTTGCGATTTGTTTGATTTCACATTGGATAGTG
CCATTGCAGGGTACGAGGCACGCGAGAAGGATGCGGGGGCGGAGAGTAAA
GGACAGTCCAAATCGGTCTGAGCGACAGAAGAGAAGATAGAGGCAGGAGG
AAAGCCAGGGGAGATGTATAGTAGACCAAAAGAGAGATCTATTGAAAGTA
TGAGTACAGGAAGAAAAGAGAGCAGTCAATTTAATTTGAGAGCGGTCTAT
TTATAAGTGTTTCTTGCGTTTTGGGGATTTGATCACCTCACTACACTTAG
GATTTCATTCTCCCTCTCACTATTTCCGATGTCAATCGAGCACGAGTGAA
CACACTGCGACAGTGGTTAATAGTTCCTTTGTACAGCGTCATATTGCCTG
CCTGCGATAATCGCTTTGCTTTGCGTGTATCTGATGGAAAGGCGAAGCGC
CACAGAGCAGC
back to top

Coding sequence (CDS) from alignment at scaffold_18:154420..155680+

>mRNA_6561 ID=mRNA_6561|Name=jgi.p|Nanoce1779_2|597349|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_18:154420..155680+ (Nannochloropsis oceanica)
ATGGGACGGAAGGAGACGACTTTTTGCGGCTACAGTGTGCCCCACCCCTC
CGAGCCTAAAATGAATGTTCGGCTTCAGACGTCCACGAGCAAAACCGCGG
TGGAAGTGCTGAAAGACGGGCTGCACGAATTGGTGGAGATTTGCGATTTG
TTTGATTTCACATTGGATAGTGCCATTGCAGGGTACGAGGCACGCGAGAA
GGATGCGGGGGCGGAGAGTAAAGGACAGTCCAAATCGGTCTGA
back to top
Synonyms
Publications