jgi.p|Nanoce1779_2|597338, mRNA_6559 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597338
Unique NamemRNA_6559
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length943
Alignment locationscaffold_18:149733..151153 -

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Properties
Property NameValue
TranscriptId597424
TrackFilteredModels2
ProteinId597338
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:149733..151153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597338gene_6559Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597338mRNA_6559-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6559CDS_6559Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6559 ID=mRNA_6559|Name=jgi.p|Nanoce1779_2|597338|organism=Nannochloropsis oceanica|type=mRNA|length=943bp
CAGCTTCACACACAAGCTCACCTATCCTTTCGAAGGTCAACATGCCTTCC
CTGATGACAACGTTGCGGGACTTGCAAGAGCGACATAAGCGATTCGTCAA
AAAGGTGCACGCGTTCCGTATCCCGCTCTCTCCCCAAGGCAAGGCTGTAG
CGCAAGTGGTGTATTTCTCTGTGCCGGTCGTGGCCGGCTACTTTATCATG
GGCTGGGCCACAGACCGCGCCAAGGCCGAGATTCAATACAGCGACGACTA
CGATGAGGCCAAGAAAACCTCGGGTTTTGGTCGTGCCAGAGCGACAGAGC
CATGCCCGCCAAATTTATAATCAAGATATAGAAACTAGTCCAAAAGGTAA
ACCTTCCTGTAGTATTATCAGCAATAATTGAACCAAGCCGCAATGGCCCT
CCCTCACCCCTCCTCCGCCGCGACCCGGCGCCTCATCAAGCTTCTTCGTC
CCGAAGCACTAGCCAAGTACCTCCACCACGTCCGCTCGTCCAACCCTCTT
CCTTCTCCTCAACTCCCTCATGCCGTGACCGGCTCTAACAGCACTGTCTG
TCTTCTTGGACTCGATGTGGGGGGTCGGAAGATAGGTGTGTCTATTGCAG
ACTGGACGTTAAGTATCGCAAGGCCCTTGACGAGGATCGATCGCCCTCCC
AGACGCCGACAGCAGCAGCAACATGCGCAGCAGCAACGAGAGCAGGAGAG
TTTCCCGGCCTTTTTCGGTAAGGAGTTGAACAAGTTAATAGAGAGGCATA
ACGCGGCGGGGTTGGTAGTGGGATACCCCCTCACACTTTGGGAGGGGAGG
GAAGGAGTGAGGTGTCAAGAGGTGGTTAATTTTATGTCGTGCGTTTATCG
AGAATCATCGCAAGAGGTCCTCGTTCCCTTTACGGTATGGGATGAAAGGA
TGACGACGCAGGTGGCGAGGGAGGCATTGAGAGGGGAGGGGGA
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protein sequence of jgi.p|Nanoce1779_2|597338

>mRNA_6559-protein ID=mRNA_6559-protein|Name=jgi.p|Nanoce1779_2|597338|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MPSLMTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGY
FIMGWATDRAKAEIQYSDDYDEAKKTSGFGRARATEPCPPNL*
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mRNA from alignment at scaffold_18:149733..151153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6559 ID=mRNA_6559|Name=jgi.p|Nanoce1779_2|597338|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp|location=Sequence derived from alignment at scaffold_18:149733..151153- (Nannochloropsis oceanica)
CAGCTTCACACACAAGCTCACCTATCCTTTCGAAGGTCAACATGCCTTCC
CTGATGACAACGTTGCGGGACTTGCAAGAGCGACATAAGCGATTCGTCAA
AAAGGTGCACGCGTTCCGTATCCCGCTCTCTCCCCAAGGCAAGGCTGTAG
CGCAAGTGGTGTATTTCTCTGTGCCGGTCGTGGCCGGCTACTTTATCATG
GGCTGGGCCACAGACCGCGCCAAGGCCGAGATTCAATACAGCGACGACTA
CGATGAGGCCAAGAAAACCTCGGGTTTTGGTCGTGCCAGAGCGACAGGTA
CTGGAGGAGATGGGGTAGAGGCTGAGCGTGTGAAAAAGGCCATGCGGGTG
ACCCCGGAGACGGCTTCGATGGAGGACCAAATTGCCAGACAAAATATGGG
TCTGCAGAGTTATTTGGATTCAATCCGGCATCAGAAGAAGAGATGAAACG
ATAGCATGGATAGGATGGTCTTCCTCTGCTCGCGTCGCCTAGGACCAGAT
TTTGAGTCCTTCTTGCCTTCTGTCGAGGCAACGGCAGATTGGTAGAAAGC
AGAAGCATGTACAGGCGTTGTACCTATGTCAACACACTCTAAACCAGACA
AAGAGGAAGGATGAAAAGAAGACATTGTGCTTTCTTGCATTCCTTCTCCT
CACCTTTCCCCTCTCCTTTGCTGTACGAGGTGCGCGCCTCGCGCTGGCCT
CCGCTCATTTCCTTTCCTCTACTTTCCTGGCTTTTCTCATTCTCCCCACT
TCCTACGAACCCACCACCACCACAGAGCCATGCCCGCCAAATTTATAATC
AAGATATAGAAACTAGTCCAAAAGGTAAACCTTCCTGTAGTATTATCAGC
AATAATTGAACCAAGCCGCAATGGCCCTCCCTCACCCCTCCTCCGCCGCG
ACCCGGCGCCTCATCAAGCTTCTTCGTCCCGAAGCACTAGCCAAGTACCT
CCACCACGTCCGCTCGTCCAACCCTCTTCCTTCTCCTCAACTCCCTCATG
CCGTGACCGGCTCTAACAGCACTGTCTGTCTTCTTGGACTCGATGTGGGG
GGTCGGAAGATAGGTGTGTCTATTGCAGACTGGACGTTAAGTATCGCAAG
GCCCTTGACGAGGATCGATCGCCCTCCCAGACGCCGACAGCAGCAGCAAC
ATGCGCAGCAGCAACGAGAGCAGGAGAGTTTCCCGGCCTTTTTCGGTAAG
GAGTTGAACAAGTTAATAGAGAGGCATAACGCGGCGGGGTTGGTAGTGGG
ATACCCCCTCACACTTTGGGAGGGGAGGGAAGGAGTGAGGTGTCAAGAGG
TGGTTAATTTTATGTCGTGCGTTTATCGAGAATCATCGCAAGAGGTCCTC
GTTCCCTTTACGGTATGGGATGAAAGGATGACGACGCAGGTGGCGAGGGA
GGCATTGAGAGGGGAGGGGGA
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Coding sequence (CDS) from alignment at scaffold_18:149733..151153-

>mRNA_6559 ID=mRNA_6559|Name=jgi.p|Nanoce1779_2|597338|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_18:149733..151153- (Nannochloropsis oceanica)
AGCCATGCCCGCCAAATTTATAAATGCCTTCCCTGATGACAACGTTGCGG
GACTTGCAAGAGCGACATAAGCGATTCGTCAAAAAGGTGCACGCGTTCCG
TATCCCGCTCTCTCCCCAAGGCAAGGCTGTAGCGCAAGTGGTGTATTTCT
CTGTGCCGGTCGTGGCCGGCTACTTTATCATGGGCTGGGCCACAGACCGC
GCCAAGGCCGAGATTCAATACAGCGACGACTACGATGAGGCCAAGAAAAC
CTCGGGTTTTGGTCGTGCCAGAGCGACAGAGCCATGCCCGCCAAATTTAT
AAATGCCTTCCCTGATGACAACGTTGCGGGACTTGCAAGAGCGACATAAG
CGATTCGTCAAAAAGGTGCACGCGTTCCGTATCCCGCTCTCTCCCCAAGG
CAAGGCTGTAGCGCAAGTGGTGTATTTCTCTGTGCCGGTCGTGGCCGGCT
ACTTTATCATGGGCTGGGCCACAGACCGCGCCAAGGCCGAGATTCAATAC
AGCGACGACTACGATGAGGCCAAGAAAACCTCGGGTTTTGGTCGTGCCAG
AGCGACAG
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Synonyms
Publications