jgi.p|Nanoce1779_2|651512, mRNA_6558 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|651512
Unique NamemRNA_6558
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length706
Alignment locationscaffold_18:149578..150283 -

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Properties
Property NameValue
TranscriptId651598
TrackFilteredModels2
ProteinId651512
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:149578..150283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651512gene_6558Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651512mRNA_6558-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6558CDS_6558Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6558 ID=mRNA_6558|Name=jgi.p|Nanoce1779_2|651512|organism=Nannochloropsis oceanica|type=mRNA|length=706bp
ATGGCCCTCCCTCACCCCTCCTCCGCCGCGACCCGGCGCCTCATCAAGCT
TCTTCGTCCCGAAGCACTAGCCAAGTACCTCCACCACGTCCGCTCGTCCA
ACCCTCTTCCTTCTCCTCAACTCCCTCATGCCGTGACCGGCTCTAACAGC
ACTGTCTGTCTTCTTGGACTCGATGTGGGGGGTCGGAAGATAGGTGTGTC
TATTGCAGACTGGACGTTAAGTATCGCAAGGCCCTTGACGAGGATCGATC
GCCCTCCCAGACGCCGACAGCAGCAGCAACATGCGCAGCAGCAACGAGAG
CAGGAGAGTTTCCCGGCCTTTTTCGGTAAGGAGTTGAACAAGTTAATAGA
GAGGCATAACGCGGCGGGGTTGGTAGTGGGATACCCCCTCACACTTTGGG
AGGGGAGGGAAGGAGTGAGGTGTCAAGAGGTGGTTAATTTTATGTCGTGC
GTTTATCGAGAATCATCGCAAGAGGTCCTCGTTCCCTTTACGGTATGGGA
TGAAAGGATGACGACGCAGGTGGCGAGGGAGGCATTGAGAGGGGAGGGGG
AGGGTTTAGGGGAAGGGGCGGGGGATGGAGTGGGAAAGAGGAGAAGGAAG
GGGGAGGGGAGACGGCAGGAAGTGGAAGATGCGGTGGCAGCGACGATTAT
GTTGCAGGATTATTTGGAAAGACACGTGCGCCCGAGCATTGCTTGAAAGG
AGGGAG
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protein sequence of jgi.p|Nanoce1779_2|651512

>mRNA_6558-protein ID=mRNA_6558-protein|Name=jgi.p|Nanoce1779_2|651512|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MALPHPSSAATRRLIKLLRPEALAKYLHHVRSSNPLPSPQLPHAVTGSNS
TVCLLGLDVGGRKIGVSIADWTLSIARPLTRIDRPPRRRQQQQHAQQQRE
QESFPAFFGKELNKLIERHNAAGLVVGYPLTLWEGREGVRCQEVVNFMSC
VYRESSQEVLVPFTVWDERMTTQVAREALRGEGEGLGEGAGDGVGKRRRK
GEGRRQEVEDAVAATIMLQDYLERHVRPSIA*
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mRNA from alignment at scaffold_18:149578..150283-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6558 ID=mRNA_6558|Name=jgi.p|Nanoce1779_2|651512|organism=Nannochloropsis oceanica|type=mRNA|length=706bp|location=Sequence derived from alignment at scaffold_18:149578..150283- (Nannochloropsis oceanica)
ATGGCCCTCCCTCACCCCTCCTCCGCCGCGACCCGGCGCCTCATCAAGCT
TCTTCGTCCCGAAGCACTAGCCAAGTACCTCCACCACGTCCGCTCGTCCA
ACCCTCTTCCTTCTCCTCAACTCCCTCATGCCGTGACCGGCTCTAACAGC
ACTGTCTGTCTTCTTGGACTCGATGTGGGGGGTCGGAAGATAGGTGTGTC
TATTGCAGACTGGACGTTAAGTATCGCAAGGCCCTTGACGAGGATCGATC
GCCCTCCCAGACGCCGACAGCAGCAGCAACATGCGCAGCAGCAACGAGAG
CAGGAGAGTTTCCCGGCCTTTTTCGGTAAGGAGTTGAACAAGTTAATAGA
GAGGCATAACGCGGCGGGGTTGGTAGTGGGATACCCCCTCACACTTTGGG
AGGGGAGGGAAGGAGTGAGGTGTCAAGAGGTGGTTAATTTTATGTCGTGC
GTTTATCGAGAATCATCGCAAGAGGTCCTCGTTCCCTTTACGGTATGGGA
TGAAAGGATGACGACGCAGGTGGCGAGGGAGGCATTGAGAGGGGAGGGGG
AGGGTTTAGGGGAAGGGGCGGGGGATGGAGTGGGAAAGAGGAGAAGGAAG
GGGGAGGGGAGACGGCAGGAAGTGGAAGATGCGGTGGCAGCGACGATTAT
GTTGCAGGATTATTTGGAAAGACACGTGCGCCCGAGCATTGCTTGAAAGG
AGGGAG
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Coding sequence (CDS) from alignment at scaffold_18:149578..150283-

>mRNA_6558 ID=mRNA_6558|Name=jgi.p|Nanoce1779_2|651512|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_18:149578..150283- (Nannochloropsis oceanica)
ATGGCCCTCCCTCACCCCTCCTCCGCCGCGACCCGGCGCCTCATCAAGCT
TCTTCGTCCCGAAGCACTAGCCAAGTACCTCCACCACGTCCGCTCGTCCA
ACCCTCTTCCTTCTCCTCAACTCCCTCATGCCGTGACCGGCTCTAACAGC
ACTGTCTGTCTTCTTGGACTCGATGTGGGGGGTCGGAAGATAGGTGTGTC
TATTGCAGACTGGACGTTAAGTATCGCAAGGCCCTTGACGAGGATCGATC
GCCCTCCCAGACGCCGACAGCAGCAGCAACATGCGCAGCAGCAACGAGAG
CAGGAGAGTTTCCCGGCCTTTTTCGGTAAGGAGTTGAACAAGTTAATAGA
GAGGCATAACGCGGCGGGGTTGGTAGTGGGATACCCCCTCACACTTTGGG
AGGGGAGGGAAGGAGTGAGGTGTCAAGAGGTGGTTAATTTTATGTCGTGC
GTTTATCGAGAATCATCGCAAGAGGTCCTCGTTCCCTTTACGGTATGGGA
TGAAAGGATGACGACGCAGGTGGCGAGGGAGGCATTGAGAGGGGAGGGGG
AGGGTTTAGGGGAAGGGGCGGGGGATGGAGTGGGAAAGAGGAGAAGGAAG
GGGGAGGGGAGACGGCAGGAAGTGGAAGATGCGGTGGCAGCGACGATTAT
GTTGCAGGATTATTTGGAAAGACACGTGCGCCCGAGCATTGCTTGA
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Synonyms
Publications